Wall clock time and date at job start Mon Mar 30 2020 01:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37689 * 119.83417 * 2 1 4 4 C 1.40755 * 119.88805 * 179.97438 * 3 2 1 5 5 C 1.41414 * 120.20111 * 180.02562 * 4 3 2 6 6 H 1.07997 * 119.99354 * 204.47455 * 5 4 3 7 7 C 1.39925 * 120.00281 * 24.47473 * 5 4 3 8 8 N 1.30828 * 120.00028 * 17.86168 * 7 5 4 9 9 Si 1.86799 * 119.99838 * 197.86766 * 7 5 4 10 10 H 1.48499 * 109.47482 * 89.99817 * 9 7 5 11 11 H 1.48499 * 109.47054 * 209.99561 * 9 7 5 12 12 H 1.48495 * 109.47336 * 329.99721 * 9 7 5 13 13 C 1.40598 * 119.58934 * 0.04976 * 4 3 2 14 14 C 1.38282 * 119.67384 * 359.97091 * 13 4 3 15 15 N 1.39683 * 119.95217 * 179.97438 * 14 13 4 16 16 N 1.36606 * 119.99841 * 0.02562 * 15 14 13 17 17 C 1.38475 * 119.83907 * 180.02562 * 2 1 3 18 18 H 1.08991 * 109.46931 * 269.97413 * 1 2 3 19 19 H 1.09001 * 109.47179 * 29.98139 * 1 2 3 20 20 H 1.09000 * 109.46682 * 149.97749 * 1 2 3 21 21 H 1.07996 * 120.05798 * 359.97438 * 3 2 1 22 22 H 0.97001 * 119.99964 * 179.97438 * 8 7 5 23 23 H 1.07998 * 120.16191 * 180.25853 * 13 4 3 24 24 H 0.96996 * 120.00371 * 180.02562 * 15 14 13 25 25 H 1.00905 * 110.99543 * 56.04640 * 16 15 14 26 26 H 1.00900 * 110.99760 * 179.97438 * 16 15 14 27 27 H 1.08001 * 119.78775 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1920 1.1944 0.0000 4 6 3.5996 1.1957 0.0005 5 6 4.3098 2.4186 0.0011 6 1 5.3172 2.4580 -0.3860 7 6 3.7073 3.5774 0.5031 8 7 2.6565 3.4856 1.2771 9 14 4.4032 5.2554 0.0681 10 1 3.7549 5.7542 -1.1713 11 1 4.1404 6.2038 1.1802 12 1 5.8677 5.1425 -0.1504 13 6 4.2950 -0.0262 0.0000 14 6 3.5893 -1.2155 -0.0004 15 7 4.2743 -2.4328 -0.0015 16 7 5.6403 -2.4479 -0.0015 17 6 2.1960 -1.2012 -0.0005 18 1 -0.3633 -0.0005 1.0276 19 1 -0.3633 0.8902 -0.5135 20 1 -0.3633 -0.8898 -0.5142 21 1 1.6503 2.1287 -0.0004 22 1 2.2391 4.2890 1.6254 23 1 5.3749 -0.0360 0.0047 24 1 3.7801 -3.2674 -0.0021 25 1 6.0076 -1.9265 0.7803 26 1 5.9914 -3.3939 -0.0019 27 1 1.6499 -2.1329 -0.0014 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307443170.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:29 Heat of formation + Delta-G solvation = 15.745030 kcal Electronic energy + Delta-G solvation = -11509.258990 eV Core-core repulsion = 9459.100874 eV Total energy + Delta-G solvation = -2050.158115 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.82011 -37.38126 -35.47487 -32.90396 -31.62727 -28.04932 -27.21862 -26.75809 -22.65730 -21.18007 -19.31552 -18.22126 -17.22947 -16.74274 -16.19620 -15.50343 -15.06551 -14.59611 -14.23986 -13.61336 -13.34037 -13.10277 -12.98750 -12.73078 -12.49532 -12.11159 -11.71195 -11.57873 -11.16324 -10.92440 -9.65681 -9.15213 -8.57481 -7.70049 -6.29472 1.06019 1.35438 1.40272 1.53082 1.60213 2.24540 2.45352 2.80547 3.85006 4.37754 4.46948 4.63998 4.80238 4.98340 5.12034 5.18688 5.23831 5.37880 5.48660 5.65577 5.85741 6.08455 6.19187 6.32046 6.43661 6.72284 6.96742 7.06733 7.24833 7.65237 8.39974 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.036899 B = 0.012425 C = 0.009569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.652976 B = 2252.997899 C = 2925.442880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.051 4.051 3 C -0.231 4.231 4 C 0.109 3.891 5 C -0.503 4.503 6 H 0.069 0.931 7 C 0.037 3.963 8 N -0.823 5.823 9 Si 0.981 3.019 10 H -0.262 1.262 11 H -0.266 1.266 12 H -0.260 1.260 13 C -0.304 4.304 14 C 0.234 3.766 15 N -0.606 5.606 16 N -0.609 5.609 17 C -0.302 4.302 18 H 0.065 0.935 19 H 0.055 0.945 20 H 0.075 0.925 21 H 0.097 0.903 22 H 0.286 0.714 23 H 0.092 0.908 24 H 0.405 0.595 25 H 0.329 0.671 26 H 0.363 0.637 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 -5.428 -0.448 5.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.052 4.052 3 C -0.251 4.251 4 C 0.106 3.894 5 C -0.533 4.533 6 H 0.087 0.913 7 C -0.178 4.178 8 N -0.449 5.449 9 Si 0.802 3.198 10 H -0.187 1.187 11 H -0.191 1.191 12 H -0.184 1.184 13 C -0.329 4.329 14 C 0.133 3.867 15 N -0.334 5.334 16 N -0.235 5.235 17 C -0.326 4.326 18 H 0.084 0.916 19 H 0.074 0.926 20 H 0.094 0.906 21 H 0.115 0.885 22 H 0.097 0.903 23 H 0.111 0.889 24 H 0.243 0.757 25 H 0.143 0.857 26 H 0.178 0.822 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.096 -4.923 -0.993 5.023 hybrid contribution 0.278 -0.087 0.971 1.013 sum 0.182 -5.010 -0.022 5.013 Atomic orbital electron populations 1.20642 0.90795 1.02044 1.01718 1.19693 0.96074 0.92625 0.96763 1.21018 0.94168 0.96346 1.13596 1.17767 0.92700 0.92513 0.86416 1.19780 1.01314 0.93851 1.38345 0.91325 1.26724 0.94457 1.04767 0.91806 1.69918 1.19434 1.32525 1.23015 0.85234 0.79594 0.76012 0.78995 1.18711 1.19056 1.18421 1.20480 0.97657 0.91419 1.23329 1.17418 0.90840 0.84661 0.93775 1.43018 0.99585 1.05129 1.85625 1.60043 0.93360 1.20695 1.49377 1.19922 0.91167 0.97048 1.24489 0.91640 0.92642 0.90625 0.88474 0.90318 0.88948 0.75665 0.85703 0.82161 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.55 10.00 71.24 0.71 -2.84 15 2 C -0.05 -2.41 5.87 -19.94 -0.12 -2.52 15 3 C -0.23 -12.75 8.34 22.76 0.19 -12.56 15 4 C 0.11 6.28 5.57 -21.31 -0.12 6.16 15 5 C -0.50 -28.85 9.05 23.46 0.21 -28.64 15 6 H 0.07 3.85 7.91 -2.91 -0.02 3.83 15 7 C 0.04 1.97 5.14 85.25 0.44 2.40 15 8 N -0.82 -44.74 10.96 21.82 0.24 -44.50 15 9 Si 0.98 39.88 29.60 68.60 2.03 41.91 15 10 H -0.26 -10.34 7.11 99.48 0.71 -9.64 15 11 H -0.27 -10.15 7.11 99.48 0.71 -9.44 15 12 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 13 C -0.30 -16.09 9.10 22.86 0.21 -15.88 15 14 C 0.23 10.76 6.69 38.17 0.26 11.01 15 15 N -0.61 -21.47 6.66 -51.48 -0.34 -21.81 15 16 N -0.61 -18.83 9.59 37.02 0.36 -18.47 15 17 C -0.30 -13.47 9.55 22.59 0.22 -13.26 15 18 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 19 H 0.05 2.02 8.08 -2.39 -0.02 2.00 15 20 H 0.07 2.36 8.08 -2.39 -0.02 2.34 15 21 H 0.10 5.61 6.15 -2.91 -0.02 5.59 15 22 H 0.29 14.00 8.30 -92.71 -0.77 13.23 15 23 H 0.09 4.80 7.02 -2.91 -0.02 4.77 15 24 H 0.40 11.63 8.84 -215.50 -1.91 9.72 15 25 H 0.33 10.37 8.42 -210.55 -1.77 8.60 15 26 H 0.36 7.90 9.21 -210.55 -1.94 5.96 15 27 H 0.12 4.35 8.06 -2.91 -0.02 4.32 15 Total: -1.00 -64.95 235.62 -0.13 -65.08 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -4.41 Total: 33.91 kcal Atomic # 6 Polarization: -58.12 SS G_CDS: 2.00 Total: -56.12 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: 0.25 Total: -84.79 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -64.95 -0.13 -65.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307443170.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.826 kcal (2) G-P(sol) polarization free energy of solvation -64.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds