Wall clock time and date at job start Mon Mar 30 2020 01:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38888 * 119.68969 * 2 1 4 4 C 1.36458 * 120.60051 * 179.71609 * 3 2 1 5 5 C 1.40729 * 119.94681 * 0.56105 * 4 3 2 6 6 C 1.41037 * 120.30486 * 179.74253 * 5 4 3 7 7 H 1.08004 * 119.99967 * 154.27575 * 6 5 4 8 8 C 1.39927 * 120.00401 * 334.27624 * 6 5 4 9 9 N 1.30885 * 119.99482 * 334.64869 * 8 6 5 10 10 Si 1.86791 * 120.00446 * 154.64766 * 8 6 5 11 11 H 1.48498 * 109.47320 * 179.97438 * 10 8 6 12 12 H 1.48501 * 109.47226 * 300.00401 * 10 8 6 13 13 H 1.48501 * 109.47122 * 60.00089 * 10 8 6 14 14 C 1.41542 * 119.38425 * 359.46162 * 5 4 3 15 15 N 1.38735 * 120.29151 * 180.27506 * 14 5 4 16 16 N 1.36593 * 120.00119 * 180.02562 * 15 14 5 17 17 C 1.38169 * 119.68506 * 180.02562 * 2 1 3 18 18 H 1.09008 * 109.47082 * 269.97933 * 1 2 3 19 19 H 1.08998 * 109.47249 * 29.97689 * 1 2 3 20 20 H 1.09001 * 109.47827 * 149.98505 * 1 2 3 21 21 H 1.08005 * 119.70143 * 359.97438 * 3 2 1 22 22 H 1.07997 * 120.02723 * 180.30339 * 4 3 2 23 23 H 0.96996 * 120.00456 * 354.18799 * 9 8 6 24 24 H 0.97001 * 120.00152 * 0.02562 * 15 14 5 25 25 H 1.00905 * 111.00169 * 180.02562 * 16 15 14 26 26 H 1.00907 * 110.99851 * 303.95065 * 16 15 14 27 27 H 1.08001 * 119.98536 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2065 0.0000 4 6 3.5593 1.2282 0.0058 5 6 4.2811 0.0202 0.0000 6 6 5.6914 0.0338 0.0004 7 1 6.2395 -0.8056 0.4024 8 6 6.3807 1.1349 -0.5198 9 7 5.8137 1.8953 -1.4217 10 14 8.1099 1.5195 0.0728 11 1 8.6164 2.7267 -0.6281 12 1 8.0875 1.7691 1.5365 13 1 9.0008 0.3679 -0.2192 14 6 3.5787 -1.2086 -0.0004 15 7 4.2713 -2.4106 -0.0004 16 7 3.5874 -3.5930 -0.0012 17 6 2.1912 -1.2004 -0.0005 18 1 -0.3634 -0.0004 1.0277 19 1 -0.3633 0.8902 -0.5135 20 1 -0.3635 -0.8898 -0.5140 21 1 1.6450 2.1361 -0.0004 22 1 4.0848 2.1717 0.0107 23 1 4.9514 1.6489 -1.7911 24 1 5.2414 -2.4115 0.0002 25 1 4.2218 -4.3777 -0.0007 26 1 2.9504 -3.6429 0.7798 27 1 1.6459 -2.1326 -0.0014 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307504329.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:35 Heat of formation + Delta-G solvation = 31.681045 kcal Electronic energy + Delta-G solvation = -11660.495560 eV Core-core repulsion = 9611.028482 eV Total energy + Delta-G solvation = -2049.467078 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.29509 -35.57772 -34.08311 -30.93870 -29.42760 -27.14340 -26.13047 -23.53622 -20.53902 -20.15023 -17.91261 -16.67931 -15.80723 -14.42983 -14.23551 -13.96740 -13.47878 -12.86311 -12.40658 -12.28721 -11.86882 -11.65810 -11.12603 -11.01817 -10.56323 -10.39377 -10.04807 -9.74258 -9.37223 -8.86467 -8.17096 -7.38168 -7.10529 -6.19203 -4.13797 2.82981 3.09368 3.18970 3.30153 3.39366 4.08796 4.11653 4.67712 5.55923 5.78755 6.08524 6.14518 6.40051 6.43469 6.54749 6.63647 6.90059 7.10827 7.29513 7.43839 7.65241 7.68635 7.91877 8.08655 8.24145 8.35680 8.59821 8.89351 9.06797 9.29900 10.20654 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.037948 B = 0.013439 C = 0.010321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.678718 B = 2083.023762 C = 2712.372223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.184 4.184 3 C -0.121 4.121 4 C -0.196 4.196 5 C 0.059 3.941 6 C -0.534 4.534 7 H 0.065 0.935 8 C 0.040 3.960 9 N -0.806 5.806 10 Si 1.063 2.937 11 H -0.275 1.275 12 H -0.277 1.277 13 H -0.280 1.280 14 C 0.117 3.883 15 N -0.604 5.604 16 N -0.601 5.601 17 C -0.150 4.150 18 H 0.043 0.957 19 H 0.046 0.954 20 H 0.045 0.955 21 H 0.085 0.915 22 H 0.106 0.894 23 H 0.299 0.701 24 H 0.398 0.602 25 H 0.338 0.662 26 H 0.315 0.685 27 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 -4.397 2.982 5.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.186 4.186 3 C -0.141 4.141 4 C -0.216 4.216 5 C 0.053 3.947 6 C -0.564 4.564 7 H 0.083 0.917 8 C -0.180 4.180 9 N -0.431 5.431 10 Si 0.887 3.113 11 H -0.200 1.200 12 H -0.203 1.203 13 H -0.205 1.205 14 C 0.017 3.983 15 N -0.334 5.334 16 N -0.224 5.224 17 C -0.174 4.174 18 H 0.061 0.939 19 H 0.065 0.935 20 H 0.064 0.936 21 H 0.104 0.896 22 H 0.124 0.876 23 H 0.112 0.888 24 H 0.237 0.763 25 H 0.150 0.850 26 H 0.129 0.871 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.631 -3.152 2.089 3.834 hybrid contribution -0.450 -1.484 1.104 1.903 sum -1.081 -4.636 3.193 5.732 Atomic orbital electron populations 1.20422 0.93808 1.00288 0.99684 1.18933 0.93659 0.92871 1.13106 1.20094 0.94336 0.95381 1.04302 1.20589 0.93057 0.97121 1.10866 1.17245 0.93306 0.89321 0.94802 1.20058 0.91452 1.05729 1.39139 0.91668 1.26794 1.05987 0.92226 0.93017 1.70446 1.18661 1.36694 1.17271 0.83673 0.73435 0.77167 0.76997 1.19994 1.20292 1.20539 1.17651 0.90601 0.84222 1.05789 1.42727 1.05603 0.98408 1.86647 1.60242 1.18629 0.95590 1.47915 1.19871 0.91843 0.96240 1.09451 0.93850 0.93542 0.93626 0.89637 0.87649 0.88769 0.76342 0.85017 0.87092 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.56 10.00 36.00 0.36 -1.20 15 2 C -0.18 -4.20 5.89 -104.41 -0.62 -4.81 15 3 C -0.12 -2.92 9.61 -39.98 -0.38 -3.30 15 4 C -0.20 -5.14 7.89 -39.28 -0.31 -5.45 15 5 C 0.06 1.57 5.31 -106.64 -0.57 1.01 15 6 C -0.53 -14.08 8.44 -37.89 -0.32 -14.40 15 7 H 0.07 1.64 6.75 -52.48 -0.35 1.28 15 8 C 0.04 1.04 4.94 -17.32 -0.09 0.95 15 9 N -0.81 -21.92 12.32 55.55 0.68 -21.23 15 10 Si 1.06 21.89 30.00 -169.99 -5.10 16.79 15 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 15 12 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 13 H -0.28 -5.45 7.11 56.52 0.40 -5.04 15 14 C 0.12 2.88 6.73 -83.29 -0.56 2.32 15 15 N -0.60 -12.81 6.55 32.72 0.21 -12.59 15 16 N -0.60 -10.29 9.59 60.35 0.58 -9.71 15 17 C -0.15 -3.51 8.98 -39.42 -0.35 -3.86 15 18 H 0.04 0.73 8.14 -51.92 -0.42 0.31 15 19 H 0.05 0.79 8.08 -51.93 -0.42 0.37 15 20 H 0.04 0.77 8.08 -51.93 -0.42 0.35 15 21 H 0.09 1.86 8.06 -52.48 -0.42 1.44 15 22 H 0.11 2.86 6.50 -52.49 -0.34 2.51 15 23 H 0.30 8.41 6.69 -40.82 -0.27 8.13 15 24 H 0.40 8.25 7.06 -185.16 -1.31 6.94 15 25 H 0.34 4.57 9.21 -181.36 -1.67 2.90 15 26 H 0.31 5.04 8.43 -181.36 -1.53 3.51 15 27 H 0.10 2.06 7.03 -52.49 -0.37 1.69 15 LS Contribution 231.60 15.07 3.49 3.49 Total: -1.00 -28.73 231.60 -9.29 -38.02 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -6.32 Total: 13.98 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -2.84 Total: -28.75 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 1.48 Total: -43.54 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.10 Total: 16.79 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -28.73 -9.29 -38.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307504329.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.703 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds