Wall clock time and date at job start Mon Mar 30 2020 01:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38888 * 119.68969 * 2 1 4 4 C 1.36458 * 120.60051 * 179.71609 * 3 2 1 5 5 C 1.40729 * 119.94681 * 0.56105 * 4 3 2 6 6 C 1.41037 * 120.30486 * 179.74253 * 5 4 3 7 7 H 1.08004 * 119.99967 * 154.27575 * 6 5 4 8 8 C 1.39927 * 120.00401 * 334.27624 * 6 5 4 9 9 N 1.30885 * 119.99482 * 334.64869 * 8 6 5 10 10 Si 1.86791 * 120.00446 * 154.64766 * 8 6 5 11 11 H 1.48498 * 109.47320 * 179.97438 * 10 8 6 12 12 H 1.48501 * 109.47226 * 300.00401 * 10 8 6 13 13 H 1.48501 * 109.47122 * 60.00089 * 10 8 6 14 14 C 1.41542 * 119.38425 * 359.46162 * 5 4 3 15 15 N 1.38735 * 120.29151 * 180.27506 * 14 5 4 16 16 N 1.36593 * 120.00119 * 180.02562 * 15 14 5 17 17 C 1.38169 * 119.68506 * 180.02562 * 2 1 3 18 18 H 1.09008 * 109.47082 * 269.97933 * 1 2 3 19 19 H 1.08998 * 109.47249 * 29.97689 * 1 2 3 20 20 H 1.09001 * 109.47827 * 149.98505 * 1 2 3 21 21 H 1.08005 * 119.70143 * 359.97438 * 3 2 1 22 22 H 1.07997 * 120.02723 * 180.30339 * 4 3 2 23 23 H 0.96996 * 120.00456 * 354.18799 * 9 8 6 24 24 H 0.97001 * 120.00152 * 0.02562 * 15 14 5 25 25 H 1.00905 * 111.00169 * 180.02562 * 16 15 14 26 26 H 1.00907 * 110.99851 * 303.95065 * 16 15 14 27 27 H 1.08001 * 119.98536 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2065 0.0000 4 6 3.5593 1.2282 0.0058 5 6 4.2811 0.0202 0.0000 6 6 5.6914 0.0338 0.0004 7 1 6.2395 -0.8056 0.4024 8 6 6.3807 1.1349 -0.5198 9 7 5.8137 1.8953 -1.4217 10 14 8.1099 1.5195 0.0728 11 1 8.6164 2.7267 -0.6281 12 1 8.0875 1.7691 1.5365 13 1 9.0008 0.3679 -0.2192 14 6 3.5787 -1.2086 -0.0004 15 7 4.2713 -2.4106 -0.0004 16 7 3.5874 -3.5930 -0.0012 17 6 2.1912 -1.2004 -0.0005 18 1 -0.3634 -0.0004 1.0277 19 1 -0.3633 0.8902 -0.5135 20 1 -0.3635 -0.8898 -0.5140 21 1 1.6450 2.1361 -0.0004 22 1 4.0848 2.1717 0.0107 23 1 4.9514 1.6489 -1.7911 24 1 5.2414 -2.4115 0.0002 25 1 4.2218 -4.3777 -0.0007 26 1 2.9504 -3.6429 0.7798 27 1 1.6459 -2.1326 -0.0014 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307504329.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:34 Heat of formation + Delta-G solvation = 13.537703 kcal Electronic energy + Delta-G solvation = -11661.282314 eV Core-core repulsion = 9611.028482 eV Total energy + Delta-G solvation = -2050.253832 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.12070 -37.24002 -35.95545 -32.69934 -31.22052 -28.90191 -27.83061 -25.36140 -22.41668 -21.93665 -19.79508 -18.33930 -17.45449 -16.31219 -15.91172 -15.60825 -15.22768 -14.57670 -14.16895 -14.03936 -13.65444 -13.31191 -12.79096 -12.61501 -12.28932 -11.99103 -11.74581 -11.60238 -11.22698 -10.75850 -9.86136 -9.28589 -9.08531 -7.95475 -6.10368 0.96863 1.17590 1.51938 1.65405 1.79971 2.38920 2.52045 2.78897 3.64195 4.31542 4.43623 4.46475 4.77495 4.82375 4.99350 5.09042 5.14237 5.28981 5.51161 5.67834 5.77382 5.90721 6.00952 6.19818 6.31680 6.50407 6.72978 7.02863 7.21659 7.68371 8.19229 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.037948 B = 0.013439 C = 0.010321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.678718 B = 2083.023762 C = 2712.372223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.172 4.172 3 C -0.142 4.142 4 C -0.211 4.211 5 C 0.021 3.979 6 C -0.560 4.560 7 H 0.070 0.930 8 C 0.000 4.000 9 N -0.834 5.834 10 Si 1.116 2.884 11 H -0.277 1.277 12 H -0.268 1.268 13 H -0.258 1.258 14 C 0.113 3.887 15 N -0.604 5.604 16 N -0.602 5.602 17 C -0.165 4.165 18 H 0.063 0.937 19 H 0.059 0.941 20 H 0.062 0.938 21 H 0.103 0.897 22 H 0.084 0.916 23 H 0.280 0.720 24 H 0.398 0.602 25 H 0.361 0.639 26 H 0.328 0.672 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.132 -5.647 3.583 7.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.174 4.174 3 C -0.162 4.162 4 C -0.232 4.232 5 C 0.016 3.984 6 C -0.590 4.590 7 H 0.088 0.912 8 C -0.214 4.214 9 N -0.459 5.459 10 Si 0.934 3.066 11 H -0.202 1.202 12 H -0.193 1.193 13 H -0.183 1.183 14 C 0.012 3.988 15 N -0.331 5.331 16 N -0.227 5.227 17 C -0.189 4.189 18 H 0.082 0.918 19 H 0.078 0.922 20 H 0.081 0.919 21 H 0.121 0.879 22 H 0.102 0.898 23 H 0.092 0.908 24 H 0.236 0.764 25 H 0.175 0.825 26 H 0.142 0.858 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.324 -4.454 2.694 5.371 hybrid contribution -0.425 -1.226 0.934 1.599 sum -1.749 -5.680 3.628 6.963 Atomic orbital electron populations 1.20478 0.90231 1.01855 1.01461 1.19523 0.96352 0.92033 1.09503 1.20344 0.93701 0.97025 1.05119 1.20596 0.94209 0.96459 1.11898 1.17552 0.93982 0.90384 0.96526 1.20254 0.91822 1.06664 1.40276 0.91233 1.28218 1.09261 0.91806 0.92068 1.70571 1.18273 1.37821 1.19210 0.83007 0.69230 0.77537 0.76802 1.20180 1.19313 1.18288 1.17881 0.91455 0.84870 1.04580 1.42692 1.05708 0.98944 1.85755 1.60085 1.19171 0.94716 1.48754 1.20200 0.91512 0.97471 1.09670 0.91808 0.92194 0.91930 0.87884 0.89795 0.90833 0.76363 0.82471 0.85759 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.75 10.00 71.24 0.71 -2.04 15 2 C -0.17 -7.52 5.89 -19.73 -0.12 -7.64 15 3 C -0.14 -6.79 9.61 22.01 0.21 -6.58 15 4 C -0.21 -11.39 7.89 22.46 0.18 -11.21 15 5 C 0.02 1.15 5.31 -21.17 -0.11 1.04 15 6 C -0.56 -30.13 8.44 23.37 0.20 -29.94 15 7 H 0.07 3.53 6.75 -2.91 -0.02 3.51 15 8 C 0.00 0.02 4.94 85.24 0.42 0.44 15 9 N -0.83 -47.00 12.32 21.83 0.27 -46.74 15 10 Si 1.12 44.41 30.00 68.60 2.06 46.47 15 11 H -0.28 -10.98 7.11 99.48 0.71 -10.28 15 12 H -0.27 -10.17 7.11 99.48 0.71 -9.46 15 13 H -0.26 -9.31 7.11 99.48 0.71 -8.61 15 14 C 0.11 5.52 6.73 38.99 0.26 5.78 15 15 N -0.60 -24.83 6.55 -50.39 -0.33 -25.16 15 16 N -0.60 -19.09 9.59 37.02 0.36 -18.73 15 17 C -0.16 -7.37 8.98 22.37 0.20 -7.17 15 18 H 0.06 1.89 8.14 -2.38 -0.02 1.87 15 19 H 0.06 1.82 8.08 -2.39 -0.02 1.80 15 20 H 0.06 1.86 8.08 -2.39 -0.02 1.85 15 21 H 0.10 4.43 8.06 -2.91 -0.02 4.41 15 22 H 0.08 4.79 6.50 -2.91 -0.02 4.77 15 23 H 0.28 16.56 6.69 -92.71 -0.62 15.94 15 24 H 0.40 16.20 7.06 -215.50 -1.52 14.68 15 25 H 0.36 8.75 9.21 -210.55 -1.94 6.81 15 26 H 0.33 9.51 8.43 -210.55 -1.77 7.74 15 27 H 0.12 4.68 7.03 -2.91 -0.02 4.66 15 Total: -1.00 -62.22 231.60 0.43 -61.78 By element: Atomic # 1 Polarization: 43.56 SS G_CDS: -3.87 Total: 39.69 kcal Atomic # 6 Polarization: -59.26 SS G_CDS: 1.95 Total: -57.31 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: 0.29 Total: -90.63 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.06 Total: 46.47 kcal Total: -62.22 0.43 -61.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307504329.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.322 kcal (2) G-P(sol) polarization free energy of solvation -62.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds