Wall clock time and date at job start Mon Mar 30 2020 02:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 120.00185 * 2 1 4 4 C 1.52999 * 109.46919 * 125.00360 * 3 2 1 5 5 N 1.46499 * 109.47171 * 180.02562 * 4 3 2 6 6 C 1.36418 * 126.55823 * 265.02265 * 5 4 3 7 7 C 1.36219 * 107.19767 * 179.97438 * 6 5 4 8 8 N 1.32756 * 108.61652 * 0.26917 * 7 6 5 9 9 C 1.32987 * 109.22682 * 359.56246 * 8 7 6 10 10 C 1.39994 * 125.96158 * 180.17102 * 9 8 7 11 11 H 1.08001 * 119.99489 * 180.30553 * 10 9 8 12 12 C 1.40233 * 120.00202 * 0.30809 * 10 9 8 13 13 N 1.30691 * 120.00201 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99827 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47217 * 89.99765 * 14 12 10 16 16 H 1.48499 * 109.47211 * 209.99615 * 14 12 10 17 17 H 1.48496 * 109.47295 * 329.99728 * 14 12 10 18 18 H 1.07992 * 120.00264 * 359.97438 * 1 2 3 19 19 H 1.08004 * 119.99879 * 179.97438 * 1 2 3 20 20 H 1.08006 * 120.00330 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.46831 * 5.01313 * 3 2 1 22 22 H 1.08998 * 109.47824 * 245.00413 * 3 2 1 23 23 H 1.08996 * 109.47275 * 60.00659 * 4 3 2 24 24 H 1.08996 * 109.47650 * 300.00535 * 4 3 2 25 25 H 1.08008 * 126.40257 * 359.94819 * 6 5 4 26 26 H 1.08002 * 125.68842 * 179.97438 * 7 6 5 27 27 H 0.96993 * 120.00262 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 7 3.7672 2.6018 1.1820 6 6 4.9950 2.8317 0.6338 7 6 5.2984 4.1403 0.8596 8 7 4.2967 4.6982 1.5289 9 6 3.3478 3.7894 1.7349 10 6 2.1363 4.0028 2.4030 11 1 1.4340 3.1908 2.5201 12 6 1.8346 5.2709 2.9202 13 7 2.6847 6.2535 2.7788 14 14 0.2177 5.5557 3.8111 15 1 0.3955 5.2810 5.2596 16 1 -0.2092 6.9656 3.6235 17 1 -0.8187 4.6471 3.2585 18 1 -0.5400 0.9352 0.0004 19 1 -0.5400 -0.9354 -0.0004 20 1 1.8500 -0.9353 -0.0004 21 1 1.3586 2.1316 0.0898 22 1 2.6213 1.4027 -0.9314 23 1 3.7400 0.5065 1.0919 24 1 2.4774 1.2353 2.1130 25 1 5.6116 2.1107 0.1175 26 1 6.2049 4.6394 0.5504 27 1 2.4762 7.1305 3.1368 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379320684.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:01 Heat of formation + Delta-G solvation = 69.448394 kcal Electronic energy + Delta-G solvation = -11560.297022 eV Core-core repulsion = 9512.467659 eV Total energy + Delta-G solvation = -2047.829363 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.80142 -35.44345 -33.27056 -32.05609 -28.55544 -27.91594 -24.82661 -22.91825 -19.86691 -19.53429 -19.12514 -16.64355 -15.49678 -15.16025 -14.56736 -13.92481 -13.26510 -12.82356 -12.66963 -12.26721 -11.86241 -11.55218 -11.17894 -11.08988 -10.81000 -10.57767 -10.36618 -10.06289 -9.23643 -9.13952 -7.87233 -7.69827 -6.98538 -6.33737 -4.21042 2.43604 3.08216 3.18608 3.21153 3.73399 4.05970 4.42987 4.79299 5.16234 5.37850 5.51281 5.61879 5.82670 5.93393 6.05465 6.25089 6.36672 6.54951 6.63855 6.80539 6.97566 7.20990 7.35865 7.69557 8.16311 8.30162 8.65798 9.03615 9.40535 10.32599 10.59911 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.026683 B = 0.015050 C = 0.009961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.115544 B = 1860.067855 C = 2810.420477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C -0.111 4.111 4 C 0.136 3.864 5 N -0.508 5.508 6 C -0.179 4.179 7 C -0.018 4.018 8 N -0.519 5.519 9 C 0.375 3.625 10 C -0.462 4.462 11 H 0.076 0.924 12 C 0.082 3.918 13 N -0.744 5.744 14 Si 0.907 3.093 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.265 1.265 18 H 0.098 0.902 19 H 0.093 0.907 20 H 0.105 0.895 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.133 0.867 26 H 0.132 0.868 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.555 -8.316 -2.466 9.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.164 4.164 3 C -0.149 4.149 4 C 0.011 3.989 5 N -0.198 5.198 6 C -0.309 4.309 7 C -0.170 4.170 8 N -0.240 5.240 9 C 0.132 3.868 10 C -0.502 4.502 11 H 0.094 0.906 12 C -0.141 4.141 13 N -0.369 5.369 14 Si 0.732 3.268 15 H -0.197 1.197 16 H -0.203 1.203 17 H -0.189 1.189 18 H 0.116 0.884 19 H 0.111 0.889 20 H 0.123 0.877 21 H 0.097 0.903 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.151 0.849 26 H 0.150 0.850 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.520 -7.388 -2.199 8.474 hybrid contribution -0.562 -0.856 0.019 1.024 sum -4.082 -8.244 -2.180 9.454 Atomic orbital electron populations 1.23851 0.96015 1.01674 1.01918 1.22909 0.96021 0.98217 0.99291 1.21171 0.98990 0.95580 0.99183 1.21150 0.93954 0.85384 0.98436 1.45434 1.15868 1.09532 1.48950 1.21825 0.92223 0.99457 1.17384 1.22132 0.99661 0.91705 1.03531 1.71282 1.01708 1.28375 1.22670 1.20284 0.94811 0.78274 0.93453 1.18084 1.00321 0.96694 1.35071 0.90558 1.25687 0.97665 0.95484 0.95294 1.70020 1.33025 1.01169 1.32681 0.86350 0.82172 0.78221 0.80046 1.19688 1.20305 1.18911 0.88381 0.88851 0.87698 0.90270 0.91131 0.91636 0.90499 0.84940 0.85019 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.54 14.32 29.02 0.42 -2.13 15 2 C -0.15 -2.00 9.52 -36.03 -0.34 -2.34 15 3 C -0.11 -1.89 5.98 -27.88 -0.17 -2.06 15 4 C 0.14 2.58 5.83 -4.04 -0.02 2.56 15 5 N -0.51 -12.35 2.81 -115.97 -0.33 -12.67 15 6 C -0.18 -4.26 11.60 -16.24 -0.19 -4.45 15 7 C -0.02 -0.46 11.85 -17.88 -0.21 -0.67 15 8 N -0.52 -15.57 9.41 -12.72 -0.12 -15.69 15 9 C 0.37 10.67 7.43 -155.59 -1.16 9.52 15 10 C -0.46 -12.78 9.02 -38.17 -0.34 -13.12 15 11 H 0.08 1.95 7.29 -52.49 -0.38 1.57 15 12 C 0.08 2.20 5.50 -17.29 -0.10 2.11 15 13 N -0.74 -21.29 11.90 55.56 0.66 -20.63 15 14 Si 0.91 19.50 29.56 -169.99 -5.03 14.48 15 15 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 17 H -0.26 -5.53 7.11 56.52 0.40 -5.12 15 18 H 0.10 1.32 7.84 -52.49 -0.41 0.90 15 19 H 0.09 1.00 8.06 -52.48 -0.42 0.57 15 20 H 0.11 1.24 8.06 -52.48 -0.42 0.81 15 21 H 0.08 1.52 7.79 -51.93 -0.40 1.12 15 22 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.08 1.47 7.60 -51.93 -0.39 1.07 15 25 H 0.13 2.67 8.06 -52.48 -0.42 2.24 15 26 H 0.13 3.03 8.06 -52.49 -0.42 2.61 15 27 H 0.27 7.04 8.29 -40.82 -0.34 6.71 15 LS Contribution 243.36 15.07 3.67 3.67 Total: -1.00 -31.77 243.36 -6.52 -38.29 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -3.26 Total: 3.14 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.11 Total: -10.58 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.22 Total: -48.99 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.77 -6.52 -38.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379320684.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.737 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds