Wall clock time and date at job start Mon Mar 30 2020 02:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 120.00185 * 2 1 4 4 C 1.52999 * 109.46919 * 125.00360 * 3 2 1 5 5 N 1.46499 * 109.47171 * 180.02562 * 4 3 2 6 6 C 1.36418 * 126.55823 * 265.02265 * 5 4 3 7 7 C 1.36219 * 107.19767 * 179.97438 * 6 5 4 8 8 N 1.32756 * 108.61652 * 0.26917 * 7 6 5 9 9 C 1.32987 * 109.22682 * 359.56246 * 8 7 6 10 10 C 1.39994 * 125.96158 * 180.17102 * 9 8 7 11 11 H 1.08001 * 119.99489 * 180.30553 * 10 9 8 12 12 C 1.40233 * 120.00202 * 0.30809 * 10 9 8 13 13 N 1.30691 * 120.00201 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99827 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47217 * 89.99765 * 14 12 10 16 16 H 1.48499 * 109.47211 * 209.99615 * 14 12 10 17 17 H 1.48496 * 109.47295 * 329.99728 * 14 12 10 18 18 H 1.07992 * 120.00264 * 359.97438 * 1 2 3 19 19 H 1.08004 * 119.99879 * 179.97438 * 1 2 3 20 20 H 1.08006 * 120.00330 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.46831 * 5.01313 * 3 2 1 22 22 H 1.08998 * 109.47824 * 245.00413 * 3 2 1 23 23 H 1.08996 * 109.47275 * 60.00659 * 4 3 2 24 24 H 1.08996 * 109.47650 * 300.00535 * 4 3 2 25 25 H 1.08008 * 126.40257 * 359.94819 * 6 5 4 26 26 H 1.08002 * 125.68842 * 179.97438 * 7 6 5 27 27 H 0.96993 * 120.00262 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 7 3.7672 2.6018 1.1820 6 6 4.9950 2.8317 0.6338 7 6 5.2984 4.1403 0.8596 8 7 4.2967 4.6982 1.5289 9 6 3.3478 3.7894 1.7349 10 6 2.1363 4.0028 2.4030 11 1 1.4340 3.1908 2.5201 12 6 1.8346 5.2709 2.9202 13 7 2.6847 6.2535 2.7788 14 14 0.2177 5.5557 3.8111 15 1 0.3955 5.2810 5.2596 16 1 -0.2092 6.9656 3.6235 17 1 -0.8187 4.6471 3.2585 18 1 -0.5400 0.9352 0.0004 19 1 -0.5400 -0.9354 -0.0004 20 1 1.8500 -0.9353 -0.0004 21 1 1.3586 2.1316 0.0898 22 1 2.6213 1.4027 -0.9314 23 1 3.7400 0.5065 1.0919 24 1 2.4774 1.2353 2.1130 25 1 5.6116 2.1107 0.1175 26 1 6.2049 4.6394 0.5504 27 1 2.4762 7.1305 3.1368 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379320684.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:01 Heat of formation + Delta-G solvation = 50.414689 kcal Electronic energy + Delta-G solvation = -11561.122385 eV Core-core repulsion = 9512.467659 eV Total energy + Delta-G solvation = -2048.654726 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.75702 -36.79442 -35.26735 -33.65168 -30.58276 -29.46282 -26.82826 -24.44973 -21.84305 -21.03570 -20.66074 -18.56920 -17.43625 -16.40033 -16.33182 -15.49807 -14.94358 -14.53565 -14.31668 -13.93427 -13.53298 -13.20010 -12.94208 -12.79035 -12.37371 -12.06470 -11.92065 -11.83002 -11.10337 -10.36811 -9.79530 -9.74784 -9.01226 -8.31971 -6.27580 1.33134 1.41205 1.42636 1.57353 1.84882 2.26625 2.68793 2.77785 3.63689 3.89917 4.11534 4.25879 4.43117 4.48711 4.57423 4.71143 4.85328 5.03196 5.14509 5.22455 5.39265 5.71310 5.73647 5.92294 6.19689 6.30031 6.70498 7.02631 7.41682 8.31591 8.64765 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.026683 B = 0.015050 C = 0.009961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.115544 B = 1860.067855 C = 2810.420477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.153 4.153 3 C -0.100 4.100 4 C 0.128 3.872 5 N -0.508 5.508 6 C -0.151 4.151 7 C -0.062 4.062 8 N -0.568 5.568 9 C 0.338 3.662 10 C -0.489 4.489 11 H 0.086 0.914 12 C 0.030 3.970 13 N -0.795 5.795 14 Si 0.990 3.010 15 H -0.263 1.263 16 H -0.272 1.272 17 H -0.253 1.253 18 H 0.085 0.915 19 H 0.123 0.877 20 H 0.134 0.866 21 H 0.047 0.953 22 H 0.068 0.932 23 H 0.100 0.900 24 H 0.073 0.927 25 H 0.177 0.823 26 H 0.151 0.849 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.582 -10.477 -2.576 11.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.172 4.172 3 C -0.139 4.139 4 C 0.005 3.995 5 N -0.197 5.197 6 C -0.282 4.282 7 C -0.213 4.213 8 N -0.290 5.290 9 C 0.093 3.907 10 C -0.528 4.528 11 H 0.104 0.896 12 C -0.188 4.188 13 N -0.421 5.421 14 Si 0.810 3.190 15 H -0.188 1.188 16 H -0.197 1.197 17 H -0.177 1.177 18 H 0.104 0.896 19 H 0.141 0.859 20 H 0.151 0.849 21 H 0.066 0.934 22 H 0.086 0.914 23 H 0.118 0.882 24 H 0.091 0.909 25 H 0.194 0.806 26 H 0.168 0.832 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.542 -9.592 -2.327 10.865 hybrid contribution -0.157 -0.285 -0.034 0.327 sum -4.699 -9.877 -2.361 11.190 Atomic orbital electron populations 1.24059 0.95911 1.02530 1.00128 1.22857 0.96212 0.97341 1.00760 1.20997 0.98112 0.96678 0.98076 1.21513 0.94810 0.83933 0.99201 1.45738 1.16106 1.10281 1.47525 1.22477 0.91740 0.99340 1.14657 1.22605 1.00287 0.93293 1.05077 1.71150 1.03213 1.30532 1.24102 1.20593 0.95343 0.79769 0.94955 1.18483 1.00705 0.97718 1.35930 0.89591 1.26767 1.01687 0.94716 0.95673 1.70166 1.35686 1.01862 1.34391 0.85106 0.76896 0.78359 0.78602 1.18805 1.19687 1.17667 0.89642 0.85928 0.84870 0.93408 0.91397 0.88213 0.90881 0.80567 0.83199 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.34 14.32 67.79 0.97 -3.37 15 2 C -0.15 -3.75 9.52 25.65 0.24 -3.51 15 3 C -0.10 -3.28 5.98 29.85 0.18 -3.10 15 4 C 0.13 4.64 5.83 86.38 0.50 5.15 15 5 N -0.51 -24.35 2.81 -520.83 -1.46 -25.81 15 6 C -0.15 -6.96 11.60 83.51 0.97 -5.99 15 7 C -0.06 -3.25 11.85 84.08 1.00 -2.25 15 8 N -0.57 -35.04 9.41 -194.17 -1.83 -36.86 15 9 C 0.34 19.67 7.43 133.59 0.99 20.67 15 10 C -0.49 -27.58 9.02 23.18 0.21 -27.37 15 11 H 0.09 4.45 7.29 -2.91 -0.02 4.43 15 12 C 0.03 1.65 5.50 85.35 0.47 2.12 15 13 N -0.79 -47.01 11.90 21.88 0.26 -46.75 15 14 Si 0.99 40.38 29.56 68.60 2.03 42.41 15 15 H -0.26 -10.30 7.11 99.48 0.71 -9.59 15 16 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 17 H -0.25 -9.70 7.11 99.48 0.71 -9.00 15 18 H 0.09 2.17 7.84 -2.91 -0.02 2.14 15 19 H 0.12 2.12 8.06 -2.91 -0.02 2.09 15 20 H 0.13 2.55 8.06 -2.91 -0.02 2.53 15 21 H 0.05 1.84 7.79 -2.39 -0.02 1.82 15 22 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 23 H 0.10 2.93 8.14 -2.39 -0.02 2.91 15 24 H 0.07 2.70 7.60 -2.39 -0.02 2.68 15 25 H 0.18 6.41 8.06 -2.91 -0.02 6.39 15 26 H 0.15 6.96 8.06 -2.91 -0.02 6.94 15 27 H 0.27 14.79 8.29 -92.71 -0.77 14.02 15 Total: -1.00 -70.77 243.36 5.67 -65.10 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 1.14 Total: 19.57 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 5.53 Total: -17.66 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -3.03 Total: -109.42 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -70.77 5.67 -65.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379320684.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.518 kcal (2) G-P(sol) polarization free energy of solvation -70.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds