Wall clock time and date at job start Mon Mar 30 2020 01:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38035 * 120.11658 * 2 1 4 4 N 1.39860 * 119.84253 * 359.97438 * 3 2 1 5 5 C 1.39569 * 120.32040 * 180.25117 * 3 2 1 6 6 C 1.38092 * 120.54591 * 359.48915 * 5 3 2 7 7 C 1.38698 * 120.22498 * 0.24808 * 6 5 3 8 8 N 1.38875 * 120.16396 * 180.02562 * 7 6 5 9 9 C 1.40639 * 120.11354 * 179.74042 * 2 1 3 10 10 C 1.41027 * 120.26768 * 0.02562 * 9 2 1 11 11 H 1.08007 * 120.00029 * 316.34448 * 10 9 2 12 12 C 1.39888 * 120.00081 * 136.34435 * 10 9 2 13 13 N 1.30899 * 119.99857 * 341.62682 * 12 10 9 14 14 Si 1.86797 * 119.99948 * 161.62157 * 12 10 9 15 15 H 1.48495 * 109.47038 * 60.00483 * 14 12 10 16 16 H 1.48503 * 109.46724 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47167 * 299.99884 * 14 12 10 18 18 H 1.09003 * 109.47675 * 270.25656 * 1 2 3 19 19 H 1.09008 * 109.47240 * 30.26345 * 1 2 3 20 20 H 1.09002 * 109.47280 * 150.25843 * 1 2 3 21 21 H 0.96999 * 120.00011 * 180.25697 * 4 3 2 22 22 H 0.96993 * 119.99439 * 0.26336 * 4 3 2 23 23 H 1.07999 * 119.72567 * 179.75652 * 5 3 2 24 24 H 1.08009 * 119.88753 * 180.27549 * 6 5 3 25 25 H 0.96996 * 119.99619 * 349.71954 * 8 7 6 26 26 H 0.96997 * 119.99577 * 169.71581 * 8 7 6 27 27 H 0.97001 * 120.00505 * 175.10404 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1940 0.0000 4 7 1.4994 2.4047 -0.0005 5 6 3.5952 1.1990 -0.0053 6 6 4.3013 0.0122 0.0000 7 6 3.6284 -1.2006 0.0055 8 7 4.3397 -2.3933 0.0114 9 6 2.2126 -1.2166 0.0055 10 6 1.5156 -2.4425 0.0105 11 1 0.6601 -2.5748 0.6565 12 6 1.9322 -3.4874 -0.8211 13 7 2.7117 -3.2394 -1.8430 14 14 1.3762 -5.2364 -0.4732 15 1 -0.1062 -5.3045 -0.5270 16 1 1.9514 -6.1506 -1.4924 17 1 1.8419 -5.6447 0.8764 18 1 -0.3634 0.0046 1.0276 19 1 -0.3634 0.8877 -0.5180 20 1 -0.3634 -0.8923 -0.5098 21 1 1.9838 3.2451 -0.0043 22 1 0.5295 2.4040 0.0029 23 1 4.1274 2.1388 -0.0092 24 1 5.3813 0.0285 0.0004 25 1 5.2981 -2.3871 -0.1382 26 1 3.8782 -3.2324 0.1652 27 1 3.0582 -3.9709 -2.3776 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575722590.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:47 Heat of formation + Delta-G solvation = 18.088479 kcal Electronic energy + Delta-G solvation = -11905.174309 eV Core-core repulsion = 9855.117813 eV Total energy + Delta-G solvation = -2050.056496 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.06751 -34.86209 -32.86826 -31.32587 -30.40044 -27.31778 -24.91232 -24.42381 -20.48889 -19.39644 -17.22454 -16.20140 -15.13906 -14.81113 -14.70619 -14.32763 -12.78271 -12.61903 -12.44995 -11.91463 -11.40371 -11.36348 -11.17632 -10.92338 -10.64658 -10.53677 -10.08778 -9.88761 -9.22496 -8.89290 -7.74805 -7.00434 -6.50512 -5.36505 -4.11174 2.92378 3.15873 3.19354 3.24232 3.51201 4.09442 4.81839 5.08390 5.65035 5.77161 6.34674 6.39063 6.64039 6.78323 6.84399 7.07341 7.18859 7.37529 7.60547 7.74215 7.88124 8.02407 8.17320 8.60049 8.75918 8.86095 8.97656 9.12131 9.43313 9.52116 10.46726 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.046560 B = 0.014485 C = 0.011731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.227453 B = 1932.537674 C = 2386.261691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.209 4.209 3 C 0.172 3.828 4 N -0.899 5.899 5 C -0.238 4.238 6 C -0.169 4.169 7 C 0.149 3.851 8 N -0.864 5.864 9 C 0.100 3.900 10 C -0.478 4.478 11 H 0.073 0.927 12 C 0.072 3.928 13 N -0.796 5.796 14 Si 0.886 3.114 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.268 1.268 18 H 0.035 0.965 19 H 0.031 0.969 20 H 0.063 0.937 21 H 0.379 0.621 22 H 0.383 0.617 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.368 0.632 26 H 0.390 0.610 27 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 2.229 2.091 3.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.215 4.215 3 C 0.071 3.929 4 N -0.442 5.442 5 C -0.262 4.262 6 C -0.193 4.193 7 C 0.044 3.956 8 N -0.404 5.404 9 C 0.095 3.905 10 C -0.510 4.510 11 H 0.091 0.909 12 C -0.143 4.143 13 N -0.423 5.423 14 Si 0.712 3.288 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.193 1.193 18 H 0.054 0.946 19 H 0.050 0.950 20 H 0.082 0.918 21 H 0.205 0.795 22 H 0.211 0.789 23 H 0.103 0.897 24 H 0.104 0.896 25 H 0.193 0.807 26 H 0.220 0.780 27 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.211 2.066 1.848 2.780 hybrid contribution -0.070 -0.837 -0.062 0.842 sum -0.282 1.229 1.786 2.186 Atomic orbital electron populations 1.20219 0.93704 1.00247 0.99038 1.19172 0.93996 0.91216 1.17088 1.17193 0.90685 0.85167 0.99816 1.42327 1.07651 1.04949 1.89321 1.19589 0.91417 0.96012 1.19162 1.19789 0.96621 0.91572 1.11351 1.17815 0.91398 0.85294 1.01065 1.41900 1.07768 1.06797 1.83978 1.16831 0.89303 0.91918 0.92457 1.19009 1.14050 0.96655 1.21301 0.90937 1.25632 0.94969 0.99957 0.93712 1.69947 1.27429 1.33432 1.11515 0.86728 0.80091 0.83188 0.78839 1.19323 1.20773 1.19279 0.94590 0.94966 0.91827 0.79539 0.78890 0.89695 0.89603 0.80710 0.77964 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 9.06 36.00 0.33 -1.29 15 2 C -0.21 -5.18 5.95 -103.79 -0.62 -5.80 15 3 C 0.17 3.96 6.73 -83.77 -0.56 3.39 15 4 N -0.90 -16.44 8.99 32.41 0.29 -16.14 15 5 C -0.24 -5.50 9.88 -39.14 -0.39 -5.88 15 6 C -0.17 -4.04 9.87 -39.47 -0.39 -4.43 15 7 C 0.15 3.79 6.27 -83.22 -0.52 3.27 15 8 N -0.86 -19.94 7.65 32.75 0.25 -19.68 15 9 C 0.10 2.68 5.29 -106.66 -0.56 2.12 15 10 C -0.48 -12.65 7.25 -37.91 -0.27 -12.92 15 11 H 0.07 1.89 7.69 -52.48 -0.40 1.49 15 12 C 0.07 1.80 3.41 -17.33 -0.06 1.74 15 13 N -0.80 -20.81 11.39 55.55 0.63 -20.18 15 14 Si 0.89 18.82 29.60 -169.99 -5.03 13.79 15 15 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 16 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 17 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 18 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 19 H 0.03 0.61 6.54 -51.92 -0.34 0.27 15 20 H 0.06 1.44 7.08 -51.93 -0.37 1.07 15 21 H 0.38 5.95 8.84 -40.82 -0.36 5.59 15 22 H 0.38 6.38 6.79 -40.82 -0.28 6.10 15 23 H 0.08 1.75 8.06 -52.49 -0.42 1.33 15 24 H 0.09 1.86 8.06 -52.48 -0.42 1.43 15 25 H 0.37 7.45 8.85 -40.82 -0.36 7.09 15 26 H 0.39 9.17 6.01 -40.82 -0.25 8.93 15 27 H 0.27 6.67 8.30 -40.82 -0.34 6.33 15 LS Contribution 227.00 15.07 3.42 3.42 Total: -1.00 -28.49 227.00 -6.24 -34.73 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: -2.76 Total: 23.87 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -3.05 Total: -19.80 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 1.17 Total: -56.01 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -28.49 -6.24 -34.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575722590.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.823 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds