Wall clock time and date at job start Mon Mar 30 2020 01:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38035 * 120.11658 * 2 1 4 4 N 1.39860 * 119.84253 * 359.97438 * 3 2 1 5 5 C 1.39569 * 120.32040 * 180.25117 * 3 2 1 6 6 C 1.38092 * 120.54591 * 359.48915 * 5 3 2 7 7 C 1.38698 * 120.22498 * 0.24808 * 6 5 3 8 8 N 1.38875 * 120.16396 * 180.02562 * 7 6 5 9 9 C 1.40639 * 120.11354 * 179.74042 * 2 1 3 10 10 C 1.41027 * 120.26768 * 0.02562 * 9 2 1 11 11 H 1.08007 * 120.00029 * 316.34448 * 10 9 2 12 12 C 1.39888 * 120.00081 * 136.34435 * 10 9 2 13 13 N 1.30899 * 119.99857 * 341.62682 * 12 10 9 14 14 Si 1.86797 * 119.99948 * 161.62157 * 12 10 9 15 15 H 1.48495 * 109.47038 * 60.00483 * 14 12 10 16 16 H 1.48503 * 109.46724 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47167 * 299.99884 * 14 12 10 18 18 H 1.09003 * 109.47675 * 270.25656 * 1 2 3 19 19 H 1.09008 * 109.47240 * 30.26345 * 1 2 3 20 20 H 1.09002 * 109.47280 * 150.25843 * 1 2 3 21 21 H 0.96999 * 120.00011 * 180.25697 * 4 3 2 22 22 H 0.96993 * 119.99439 * 0.26336 * 4 3 2 23 23 H 1.07999 * 119.72567 * 179.75652 * 5 3 2 24 24 H 1.08009 * 119.88753 * 180.27549 * 6 5 3 25 25 H 0.96996 * 119.99619 * 349.71954 * 8 7 6 26 26 H 0.96997 * 119.99577 * 169.71581 * 8 7 6 27 27 H 0.97001 * 120.00505 * 175.10404 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1940 0.0000 4 7 1.4994 2.4047 -0.0005 5 6 3.5952 1.1990 -0.0053 6 6 4.3013 0.0122 0.0000 7 6 3.6284 -1.2006 0.0055 8 7 4.3397 -2.3933 0.0114 9 6 2.2126 -1.2166 0.0055 10 6 1.5156 -2.4425 0.0105 11 1 0.6601 -2.5748 0.6565 12 6 1.9322 -3.4874 -0.8211 13 7 2.7117 -3.2394 -1.8430 14 14 1.3762 -5.2364 -0.4732 15 1 -0.1062 -5.3045 -0.5270 16 1 1.9514 -6.1506 -1.4924 17 1 1.8419 -5.6447 0.8764 18 1 -0.3634 0.0046 1.0276 19 1 -0.3634 0.8877 -0.5180 20 1 -0.3634 -0.8923 -0.5098 21 1 1.9838 3.2451 -0.0043 22 1 0.5295 2.4040 0.0029 23 1 4.1274 2.1388 -0.0092 24 1 5.3813 0.0285 0.0004 25 1 5.2981 -2.3871 -0.1382 26 1 3.8782 -3.2324 0.1652 27 1 3.0582 -3.9709 -2.3776 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575722590.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:46 Heat of formation + Delta-G solvation = -1.273632 kcal Electronic energy + Delta-G solvation = -11906.013913 eV Core-core repulsion = 9855.117813 eV Total energy + Delta-G solvation = -2050.896100 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.87161 -36.62681 -34.72253 -33.06611 -32.19427 -29.14202 -26.67140 -26.29964 -22.32554 -21.20905 -19.08101 -17.89578 -16.96331 -16.60383 -16.44144 -16.03874 -14.53430 -14.41095 -14.22652 -13.70361 -13.18622 -13.13217 -12.93087 -12.64337 -12.49241 -12.22278 -11.84171 -11.64499 -11.05649 -10.76543 -9.45971 -8.88482 -8.37558 -7.15149 -6.05423 1.10770 1.44238 1.48682 1.53133 1.68092 2.32568 2.93391 3.56018 3.82910 3.94532 4.57798 4.65709 4.92169 5.05784 5.09292 5.30638 5.34452 5.52573 5.84263 5.93586 6.06287 6.27341 6.29780 6.69028 6.95110 7.14606 7.19572 7.50749 7.56756 7.76882 8.60434 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.046560 B = 0.014485 C = 0.011731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.227453 B = 1932.537674 C = 2386.261691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.233 4.233 3 C 0.168 3.832 4 N -0.883 5.883 5 C -0.244 4.244 6 C -0.178 4.178 7 C 0.123 3.877 8 N -0.860 5.860 9 C 0.061 3.939 10 C -0.503 4.503 11 H 0.063 0.937 12 C 0.040 3.960 13 N -0.827 5.827 14 Si 0.955 3.045 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.262 1.262 18 H 0.047 0.953 19 H 0.057 0.943 20 H 0.044 0.956 21 H 0.395 0.605 22 H 0.393 0.607 23 H 0.111 0.889 24 H 0.105 0.895 25 H 0.380 0.620 26 H 0.386 0.614 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.346 2.751 2.270 3.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.239 4.239 3 C 0.065 3.935 4 N -0.428 5.428 5 C -0.268 4.268 6 C -0.202 4.202 7 C 0.018 3.982 8 N -0.401 5.401 9 C 0.056 3.944 10 C -0.535 4.535 11 H 0.081 0.919 12 C -0.172 4.172 13 N -0.455 5.455 14 Si 0.778 3.222 15 H -0.195 1.195 16 H -0.201 1.201 17 H -0.187 1.187 18 H 0.065 0.935 19 H 0.075 0.925 20 H 0.063 0.937 21 H 0.223 0.777 22 H 0.222 0.778 23 H 0.129 0.871 24 H 0.123 0.877 25 H 0.206 0.794 26 H 0.216 0.784 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.299 2.631 2.033 3.338 hybrid contribution -0.033 -0.854 -0.114 0.862 sum -0.332 1.777 1.919 2.636 Atomic orbital electron populations 1.20167 0.92034 1.00503 0.99818 1.19628 0.95647 0.91594 1.17078 1.17314 0.91059 0.86197 0.98909 1.42174 1.08198 1.04159 1.88239 1.19972 0.91833 0.96865 1.18156 1.20116 0.97803 0.91488 1.10831 1.18076 0.91553 0.86458 1.02067 1.41794 1.08261 1.06110 1.83909 1.17252 0.90327 0.92879 0.93919 1.19113 1.14501 0.97840 1.22087 0.91855 1.26232 0.94775 1.03211 0.92949 1.70004 1.28653 1.34635 1.12246 0.85680 0.79276 0.78423 0.78866 1.19518 1.20066 1.18657 0.93458 0.92464 0.93719 0.77721 0.77753 0.87098 0.87714 0.79399 0.78420 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.89 9.06 71.23 0.65 -2.24 15 2 C -0.23 -11.48 5.95 -19.33 -0.11 -11.59 15 3 C 0.17 7.42 6.73 38.13 0.26 7.68 15 4 N -0.88 -29.76 8.99 -51.38 -0.46 -30.22 15 5 C -0.24 -10.82 9.88 22.56 0.22 -10.59 15 6 C -0.18 -8.33 9.87 22.35 0.22 -8.11 15 7 C 0.12 6.29 6.27 38.96 0.24 6.54 15 8 N -0.86 -39.73 7.65 -50.31 -0.38 -40.12 15 9 C 0.06 3.32 5.29 -21.18 -0.11 3.20 15 10 C -0.50 -27.03 7.25 23.35 0.17 -26.86 15 11 H 0.06 3.38 7.69 -2.91 -0.02 3.36 15 12 C 0.04 2.03 3.41 85.23 0.29 2.32 15 13 N -0.83 -43.50 11.39 21.82 0.25 -43.25 15 14 Si 0.95 38.79 29.60 68.60 2.03 40.82 15 15 H -0.27 -10.97 7.11 99.48 0.71 -10.27 15 16 H -0.28 -10.80 7.11 99.48 0.71 -10.10 15 17 H -0.26 -10.31 7.11 99.48 0.71 -9.61 15 18 H 0.05 1.85 8.14 -2.39 -0.02 1.83 15 19 H 0.06 2.06 6.54 -2.38 -0.02 2.04 15 20 H 0.04 2.03 7.08 -2.39 -0.02 2.01 15 21 H 0.39 11.06 8.84 -92.71 -0.82 10.24 15 22 H 0.39 11.89 6.79 -92.71 -0.63 11.26 15 23 H 0.11 4.24 8.06 -2.91 -0.02 4.21 15 24 H 0.10 4.37 8.06 -2.91 -0.02 4.34 15 25 H 0.38 15.25 8.85 -92.71 -0.82 14.43 15 26 H 0.39 18.28 6.01 -92.71 -0.56 17.73 15 27 H 0.28 13.53 8.30 -92.71 -0.77 12.76 15 Total: -1.00 -59.83 227.00 1.66 -58.17 By element: Atomic # 1 Polarization: 55.85 SS G_CDS: -1.60 Total: 54.25 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 1.82 Total: -39.65 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -0.60 Total: -113.59 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Total: -59.83 1.66 -58.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575722590.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.896 kcal (2) G-P(sol) polarization free energy of solvation -59.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds