Wall clock time and date at job start Mon Mar 30 2020 01:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36245 * 119.98443 * 2 1 4 4 C 1.39736 * 120.48743 * 179.97438 * 3 2 1 5 5 N 1.38959 * 119.78544 * 179.97438 * 4 3 2 6 6 C 1.39118 * 120.43611 * 359.97438 * 4 3 2 7 7 C 1.38288 * 119.95685 * 0.02562 * 6 4 3 8 8 N 1.38851 * 120.23577 * 179.97438 * 7 6 4 9 9 C 1.40814 * 119.98852 * 179.71908 * 2 1 3 10 10 C 1.40890 * 120.21251 * 359.97438 * 9 2 1 11 11 H 1.07999 * 120.00483 * 309.44614 * 10 9 2 12 12 C 1.39840 * 119.99408 * 129.44859 * 10 9 2 13 13 N 1.30974 * 119.99714 * 166.86760 * 12 10 9 14 14 Si 1.86795 * 120.00283 * 346.86138 * 12 10 9 15 15 H 1.48507 * 109.46969 * 93.91331 * 14 12 10 16 16 H 1.48495 * 109.47588 * 213.91192 * 14 12 10 17 17 H 1.48498 * 109.47142 * 333.91974 * 14 12 10 18 18 H 1.09004 * 109.46522 * 90.00520 * 1 2 3 19 19 H 1.08998 * 109.47405 * 330.00734 * 1 2 3 20 20 H 1.09001 * 109.46602 * 210.00050 * 1 2 3 21 21 H 1.07999 * 119.75556 * 0.02562 * 3 2 1 22 22 H 0.97001 * 119.99133 * 359.97438 * 5 4 3 23 23 H 0.96996 * 120.00336 * 179.97438 * 5 4 3 24 24 H 1.07998 * 120.02110 * 179.97438 * 6 4 3 25 25 H 0.97001 * 119.99915 * 351.32338 * 8 7 6 26 26 H 0.97003 * 119.99947 * 171.32599 * 8 7 6 27 27 H 0.97001 * 119.99619 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1801 0.0000 4 6 3.5852 1.1924 0.0005 5 7 4.2649 2.4044 0.0000 6 6 4.3005 -0.0009 0.0016 7 6 3.6279 -1.2091 0.0016 8 7 4.3359 -2.4035 0.0022 9 6 2.2109 -1.2196 0.0060 10 6 1.5107 -2.4422 0.0125 11 1 0.7269 -2.6119 0.7359 12 6 1.8307 -3.4360 -0.9177 13 7 1.3735 -4.6531 -0.7591 14 14 2.9099 -3.0278 -2.3867 15 1 4.3253 -3.3398 -2.0630 16 1 2.4802 -3.8354 -3.5564 17 1 2.7826 -1.5837 -2.7084 18 1 -0.3632 -0.0001 -1.0277 19 1 -0.3634 0.8900 0.5137 20 1 -0.3632 -0.8900 0.5139 21 1 1.6437 2.1129 0.0004 22 1 3.7693 3.2382 -0.0011 23 1 5.2348 2.4166 0.0007 24 1 5.3803 0.0164 0.0016 25 1 5.2976 -2.3973 -0.1242 26 1 3.8688 -3.2442 0.1289 27 1 1.5958 -5.3426 -1.4042 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575722593.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:49 Heat of formation + Delta-G solvation = 19.002430 kcal Electronic energy + Delta-G solvation = -11918.694919 eV Core-core repulsion = 9868.678055 eV Total energy + Delta-G solvation = -2050.016864 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.46934 -34.94621 -33.37735 -32.46714 -29.26926 -28.31873 -25.98705 -23.68271 -20.46359 -19.84693 -17.49621 -16.31849 -15.83141 -15.06345 -14.76893 -13.84767 -13.20876 -13.00295 -12.63869 -12.32034 -11.78707 -11.77398 -11.18865 -11.03371 -10.89361 -10.27117 -9.92856 -9.70043 -9.47182 -8.75397 -8.33978 -6.79647 -6.45833 -6.10214 -3.99609 2.78371 2.96173 3.34651 3.40187 3.54418 4.31307 4.68091 4.84199 5.19163 5.43212 6.04426 6.22226 6.40230 6.65286 6.74339 6.85256 6.94845 7.06858 7.21202 7.51127 7.69735 7.86957 8.04933 8.42499 8.55225 8.62256 8.73102 8.98770 9.08257 9.25370 10.64971 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.040209 B = 0.016923 C = 0.013786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.194177 B = 1654.116810 C = 2030.539358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.075 4.075 3 C -0.225 4.225 4 C 0.178 3.822 5 N -0.891 5.891 6 C -0.261 4.261 7 C 0.188 3.812 8 N -0.875 5.875 9 C -0.012 4.012 10 C -0.472 4.472 11 H 0.082 0.918 12 C 0.073 3.927 13 N -0.860 5.860 14 Si 0.904 3.096 15 H -0.268 1.268 16 H -0.305 1.305 17 H -0.260 1.260 18 H 0.052 0.948 19 H 0.039 0.961 20 H 0.068 0.932 21 H 0.092 0.908 22 H 0.386 0.614 23 H 0.384 0.616 24 H 0.094 0.906 25 H 0.380 0.620 26 H 0.404 0.596 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 7.557 -0.283 8.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.249 4.249 4 C 0.077 3.923 5 N -0.432 5.432 6 C -0.289 4.289 7 C 0.083 3.917 8 N -0.418 5.418 9 C -0.019 4.019 10 C -0.507 4.507 11 H 0.100 0.900 12 C -0.136 4.136 13 N -0.491 5.491 14 Si 0.733 3.267 15 H -0.193 1.193 16 H -0.233 1.233 17 H -0.184 1.184 18 H 0.071 0.929 19 H 0.058 0.942 20 H 0.087 0.913 21 H 0.110 0.890 22 H 0.212 0.788 23 H 0.210 0.790 24 H 0.112 0.888 25 H 0.206 0.794 26 H 0.237 0.763 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.535 7.260 -0.335 8.567 hybrid contribution 0.973 0.104 -0.774 1.248 sum 5.508 7.365 -1.109 9.263 Atomic orbital electron populations 1.20485 0.92825 1.00684 1.00670 1.19432 0.94706 0.92047 1.01649 1.19662 0.91408 0.96980 1.16852 1.17180 0.90998 0.85044 0.99086 1.42004 1.07727 1.05058 1.88436 1.19577 0.96979 0.90707 1.21592 1.17858 0.92072 0.85099 0.96632 1.42573 1.08601 1.07157 1.83495 1.17120 0.88816 0.93687 1.02232 1.18693 1.19413 0.96166 1.16390 0.89999 1.25784 0.95505 0.93927 0.98400 1.69760 1.42626 1.01566 1.35194 0.86535 0.80339 0.79736 0.80125 1.19335 1.23348 1.18438 0.92919 0.94248 0.91327 0.88978 0.78788 0.78963 0.88774 0.79419 0.76315 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.87 9.61 36.01 0.35 -1.53 15 2 C -0.08 -1.78 5.90 -104.36 -0.62 -2.39 15 3 C -0.22 -4.81 9.44 -39.74 -0.38 -5.18 15 4 C 0.18 3.63 6.76 -83.74 -0.57 3.07 15 5 N -0.89 -13.83 9.05 32.47 0.29 -13.53 15 6 C -0.26 -5.60 9.71 -39.24 -0.38 -5.98 15 7 C 0.19 4.44 5.25 -83.34 -0.44 4.00 15 8 N -0.88 -18.89 6.08 32.69 0.20 -18.69 15 9 C -0.01 -0.31 4.53 -106.60 -0.48 -0.80 15 10 C -0.47 -13.03 7.93 -37.98 -0.30 -13.33 15 11 H 0.08 2.42 7.30 -52.49 -0.38 2.04 15 12 C 0.07 1.99 4.27 -17.32 -0.07 1.91 15 13 N -0.86 -24.22 13.94 55.54 0.77 -23.44 15 14 Si 0.90 22.11 24.32 -169.99 -4.13 17.98 15 15 H -0.27 -6.07 6.27 56.52 0.35 -5.71 15 16 H -0.30 -7.49 7.11 56.52 0.40 -7.09 15 17 H -0.26 -6.75 7.10 56.52 0.40 -6.35 15 18 H 0.05 1.06 8.14 -51.93 -0.42 0.63 15 19 H 0.04 0.70 8.08 -51.93 -0.42 0.28 15 20 H 0.07 1.50 6.65 -51.93 -0.35 1.15 15 21 H 0.09 1.74 8.06 -52.49 -0.42 1.32 15 22 H 0.39 5.12 8.83 -40.82 -0.36 4.76 15 23 H 0.38 5.13 8.83 -40.82 -0.36 4.77 15 24 H 0.09 1.79 8.06 -52.49 -0.42 1.37 15 25 H 0.38 6.95 8.84 -40.82 -0.36 6.59 15 26 H 0.40 9.28 5.95 -40.82 -0.24 9.04 15 27 H 0.27 7.13 8.30 -40.82 -0.34 6.79 15 LS Contribution 224.28 15.07 3.38 3.38 Total: -1.00 -29.66 224.28 -5.30 -34.95 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -2.92 Total: 19.58 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -2.89 Total: -20.23 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 1.27 Total: -55.66 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.13 Total: 17.98 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -29.66 -5.30 -34.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575722593.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.956 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds