Wall clock time and date at job start Mon Mar 30 2020 01:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36245 * 119.98443 * 2 1 4 4 C 1.39736 * 120.48743 * 179.97438 * 3 2 1 5 5 N 1.38959 * 119.78544 * 179.97438 * 4 3 2 6 6 C 1.39118 * 120.43611 * 359.97438 * 4 3 2 7 7 C 1.38288 * 119.95685 * 0.02562 * 6 4 3 8 8 N 1.38851 * 120.23577 * 179.97438 * 7 6 4 9 9 C 1.40814 * 119.98852 * 179.71908 * 2 1 3 10 10 C 1.40890 * 120.21251 * 359.97438 * 9 2 1 11 11 H 1.07999 * 120.00483 * 309.44614 * 10 9 2 12 12 C 1.39840 * 119.99408 * 129.44859 * 10 9 2 13 13 N 1.30974 * 119.99714 * 166.86760 * 12 10 9 14 14 Si 1.86795 * 120.00283 * 346.86138 * 12 10 9 15 15 H 1.48507 * 109.46969 * 93.91331 * 14 12 10 16 16 H 1.48495 * 109.47588 * 213.91192 * 14 12 10 17 17 H 1.48498 * 109.47142 * 333.91974 * 14 12 10 18 18 H 1.09004 * 109.46522 * 90.00520 * 1 2 3 19 19 H 1.08998 * 109.47405 * 330.00734 * 1 2 3 20 20 H 1.09001 * 109.46602 * 210.00050 * 1 2 3 21 21 H 1.07999 * 119.75556 * 0.02562 * 3 2 1 22 22 H 0.97001 * 119.99133 * 359.97438 * 5 4 3 23 23 H 0.96996 * 120.00336 * 179.97438 * 5 4 3 24 24 H 1.07998 * 120.02110 * 179.97438 * 6 4 3 25 25 H 0.97001 * 119.99915 * 351.32338 * 8 7 6 26 26 H 0.97003 * 119.99947 * 171.32599 * 8 7 6 27 27 H 0.97001 * 119.99619 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1801 0.0000 4 6 3.5852 1.1924 0.0005 5 7 4.2649 2.4044 0.0000 6 6 4.3005 -0.0009 0.0016 7 6 3.6279 -1.2091 0.0016 8 7 4.3359 -2.4035 0.0022 9 6 2.2109 -1.2196 0.0060 10 6 1.5107 -2.4422 0.0125 11 1 0.7269 -2.6119 0.7359 12 6 1.8307 -3.4360 -0.9177 13 7 1.3735 -4.6531 -0.7591 14 14 2.9099 -3.0278 -2.3867 15 1 4.3253 -3.3398 -2.0630 16 1 2.4802 -3.8354 -3.5564 17 1 2.7826 -1.5837 -2.7084 18 1 -0.3632 -0.0001 -1.0277 19 1 -0.3634 0.8900 0.5137 20 1 -0.3632 -0.8900 0.5139 21 1 1.6437 2.1129 0.0004 22 1 3.7693 3.2382 -0.0011 23 1 5.2348 2.4166 0.0007 24 1 5.3803 0.0164 0.0016 25 1 5.2976 -2.3973 -0.1242 26 1 3.8688 -3.2442 0.1289 27 1 1.5958 -5.3426 -1.4042 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575722593.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:49 Heat of formation + Delta-G solvation = -3.305183 kcal Electronic energy + Delta-G solvation = -11919.662250 eV Core-core repulsion = 9868.678055 eV Total energy + Delta-G solvation = -2050.984195 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.18753 -36.60246 -35.09687 -34.37743 -30.88855 -30.15995 -27.66930 -25.52258 -22.20913 -21.55584 -19.42530 -17.93016 -17.44360 -16.91388 -16.37195 -15.56306 -15.02499 -14.81283 -14.39187 -14.11514 -13.50442 -13.47695 -12.93996 -12.88537 -12.60929 -12.07573 -11.80227 -11.46663 -11.35345 -10.72848 -10.00461 -8.48461 -8.41757 -7.88625 -6.02662 1.02532 1.19974 1.39156 1.49324 1.57349 2.33132 2.90287 3.25612 3.54253 3.62928 4.38974 4.61412 4.77373 4.99374 5.07390 5.19381 5.22800 5.43301 5.53811 5.67770 5.91864 6.13718 6.28859 6.51172 6.87728 6.90874 7.15552 7.19708 7.33792 7.41535 8.66744 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.040209 B = 0.016923 C = 0.013786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.194177 B = 1654.116810 C = 2030.539358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.080 4.080 3 C -0.242 4.242 4 C 0.201 3.799 5 N -0.870 5.870 6 C -0.276 4.276 7 C 0.185 3.815 8 N -0.871 5.871 9 C -0.067 4.067 10 C -0.479 4.479 11 H 0.039 0.961 12 C 0.037 3.963 13 N -0.905 5.905 14 Si 0.959 3.041 15 H -0.239 1.239 16 H -0.309 1.309 17 H -0.279 1.279 18 H 0.056 0.944 19 H 0.071 0.929 20 H 0.045 0.955 21 H 0.121 0.879 22 H 0.401 0.599 23 H 0.400 0.600 24 H 0.123 0.877 25 H 0.396 0.604 26 H 0.397 0.603 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.579 10.112 -0.738 12.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.266 4.266 4 C 0.096 3.904 5 N -0.412 5.412 6 C -0.304 4.304 7 C 0.080 3.920 8 N -0.415 5.415 9 C -0.073 4.073 10 C -0.514 4.514 11 H 0.058 0.942 12 C -0.167 4.167 13 N -0.540 5.540 14 Si 0.787 3.213 15 H -0.163 1.163 16 H -0.238 1.238 17 H -0.205 1.205 18 H 0.075 0.925 19 H 0.090 0.910 20 H 0.064 0.936 21 H 0.139 0.861 22 H 0.230 0.770 23 H 0.228 0.772 24 H 0.140 0.860 25 H 0.225 0.775 26 H 0.228 0.772 27 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.508 9.871 -0.778 11.849 hybrid contribution 0.410 -0.432 -0.541 0.805 sum 6.918 9.439 -1.319 11.776 Atomic orbital electron populations 1.20492 0.91812 1.01157 1.01068 1.19824 0.95944 0.92398 1.00077 1.19933 0.92210 0.97252 1.17181 1.17379 0.91010 0.86433 0.95545 1.41946 1.08743 1.04106 1.86356 1.19871 0.98526 0.90161 1.21841 1.18037 0.91568 0.86450 0.95965 1.42551 1.09464 1.06388 1.83096 1.17229 0.90118 0.93536 1.06426 1.18605 1.18998 0.97894 1.15919 0.94245 1.26311 0.96763 0.93624 1.00024 1.69829 1.45114 1.02499 1.36542 0.85690 0.80586 0.77819 0.77247 1.16343 1.23810 1.20475 0.92484 0.90999 0.93589 0.86149 0.76969 0.77154 0.85955 0.77474 0.77224 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.66 9.61 71.24 0.68 -2.98 15 2 C -0.08 -3.68 5.90 -19.70 -0.12 -3.80 15 3 C -0.24 -9.55 9.44 22.17 0.21 -9.34 15 4 C 0.20 7.36 6.76 38.59 0.26 7.62 15 5 N -0.87 -22.39 9.05 -51.17 -0.46 -22.86 15 6 C -0.28 -10.89 9.71 22.49 0.22 -10.67 15 7 C 0.18 8.46 5.25 38.90 0.20 8.67 15 8 N -0.87 -36.36 6.08 -50.50 -0.31 -36.67 15 9 C -0.07 -3.42 4.53 -21.14 -0.10 -3.52 15 10 C -0.48 -27.49 7.93 23.31 0.18 -27.30 15 11 H 0.04 2.50 7.30 -2.91 -0.02 2.48 15 12 C 0.04 2.08 4.27 85.21 0.36 2.44 15 13 N -0.91 -52.94 13.94 21.82 0.30 -52.64 15 14 Si 0.96 46.00 24.32 68.60 1.67 47.67 15 15 H -0.24 -10.19 6.27 99.48 0.62 -9.56 15 16 H -0.31 -14.83 7.11 99.48 0.71 -14.12 15 17 H -0.28 -14.18 7.10 99.48 0.71 -13.47 15 18 H 0.06 2.27 8.14 -2.39 -0.02 2.25 15 19 H 0.07 2.44 8.08 -2.39 -0.02 2.42 15 20 H 0.05 2.08 6.65 -2.39 -0.02 2.06 15 21 H 0.12 4.02 8.06 -2.91 -0.02 3.99 15 22 H 0.40 8.43 8.83 -92.71 -0.82 7.61 15 23 H 0.40 8.43 8.83 -92.71 -0.82 7.61 15 24 H 0.12 4.07 8.06 -2.91 -0.02 4.05 15 25 H 0.40 13.48 8.84 -92.71 -0.82 12.66 15 26 H 0.40 18.13 5.95 -92.71 -0.55 17.58 15 27 H 0.27 14.90 8.30 -92.71 -0.77 14.13 15 Total: -1.00 -64.93 224.28 1.25 -63.67 By element: Atomic # 1 Polarization: 41.56 SS G_CDS: -1.86 Total: 39.69 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 1.91 Total: -38.88 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -0.47 Total: -112.16 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.67 Total: 47.67 kcal Total: -64.93 1.25 -63.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575722593.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.367 kcal (2) G-P(sol) polarization free energy of solvation -64.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds