Wall clock time and date at job start Mon Mar 30 2020 01:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39105 * 120.02041 * 2 1 4 4 N 1.38955 * 119.78689 * 0.02562 * 3 2 1 5 5 C 1.39749 * 120.43523 * 180.02562 * 3 2 1 6 6 C 1.36236 * 120.48469 * 359.97438 * 5 3 2 7 7 C 1.40813 * 120.03190 * 0.02562 * 6 5 3 8 8 C 1.40888 * 120.21860 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99781 * 153.46572 * 8 7 6 10 10 C 1.39831 * 120.00082 * 333.74064 * 8 7 6 11 11 N 1.30965 * 119.99746 * 343.34241 * 10 8 7 12 12 Si 1.86796 * 119.99816 * 163.33654 * 10 8 7 13 13 H 1.48497 * 109.47487 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47057 * 120.00511 * 12 10 8 15 15 H 1.48501 * 109.47266 * 239.99869 * 12 10 8 16 16 C 1.38295 * 120.01580 * 180.26240 * 2 1 3 17 17 N 1.38834 * 120.24160 * 359.97438 * 16 2 1 18 18 H 1.08998 * 109.46844 * 89.99589 * 1 2 3 19 19 H 1.08998 * 109.47083 * 210.00032 * 1 2 3 20 20 H 1.09001 * 109.46505 * 329.99781 * 1 2 3 21 21 H 0.96996 * 120.00465 * 180.02562 * 4 3 2 22 22 H 0.97010 * 119.99741 * 0.02562 * 4 3 2 23 23 H 1.08004 * 119.75596 * 179.97438 * 5 3 2 24 24 H 1.08001 * 119.98680 * 179.97438 * 6 5 3 25 25 H 0.97008 * 119.99766 * 180.02562 * 11 10 8 26 26 H 0.97000 * 120.00286 * 180.23806 * 17 16 2 27 27 H 0.97000 * 120.00534 * 0.23013 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2030 1.2044 0.0000 4 7 1.5042 2.4055 0.0005 5 6 3.6005 1.2146 -0.0005 6 6 4.3001 0.0456 -0.0005 7 6 3.6160 -1.1852 -0.0006 8 6 4.3355 -2.3965 -0.0011 9 1 3.8920 -3.2882 0.4167 10 6 5.6261 -2.4428 -0.5374 11 7 6.0448 -1.4800 -1.3202 12 14 6.7528 -3.8779 -0.1371 13 1 6.0467 -4.8260 0.7616 14 1 7.1312 -4.5752 -1.3925 15 1 7.9761 -3.3738 0.5371 16 6 2.1989 -1.1975 -0.0055 17 7 1.5101 -2.4029 -0.0105 18 1 -0.3633 0.0001 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3632 0.8900 0.5139 21 1 1.9863 3.2472 0.0002 22 1 0.5341 2.4022 0.0013 23 1 4.1297 2.1560 -0.0010 24 1 5.3800 0.0628 -0.0014 25 1 6.9400 -1.5123 -1.6925 26 1 1.9988 -3.2408 -0.0108 27 1 0.5401 -2.4073 -0.0135 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575723611.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:12 Heat of formation + Delta-G solvation = 15.167216 kcal Electronic energy + Delta-G solvation = -11720.205112 eV Core-core repulsion = 9670.021941 eV Total energy + Delta-G solvation = -2050.183171 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.21316 -34.60298 -33.54882 -31.64837 -29.87402 -27.75999 -25.37408 -24.02625 -20.20530 -19.92986 -16.71870 -16.50193 -15.98248 -14.83732 -14.73725 -13.61838 -13.19097 -13.02719 -12.25021 -12.04290 -11.76624 -11.49066 -11.16239 -10.96592 -10.70839 -10.44783 -10.06619 -9.49888 -9.40418 -8.92031 -8.26588 -6.48249 -6.46459 -6.09695 -3.78228 3.01373 3.22735 3.25910 3.27436 3.45398 4.17282 4.86916 5.00648 5.39630 5.85321 5.94644 6.14487 6.35411 6.47232 6.71848 7.01818 7.26006 7.43405 7.53189 7.59874 7.92217 8.17951 8.26142 8.56467 8.75340 8.90705 9.00743 9.04801 9.26978 9.36156 10.58289 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.053295 B = 0.012183 C = 0.010204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.248202 B = 2297.678015 C = 2743.319901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.227 4.227 3 C 0.151 3.849 4 N -0.894 5.894 5 C -0.218 4.218 6 C -0.092 4.092 7 C 0.019 3.981 8 C -0.466 4.466 9 H 0.065 0.935 10 C 0.072 3.928 11 N -0.819 5.819 12 Si 0.898 3.102 13 H -0.266 1.266 14 H -0.280 1.280 15 H -0.277 1.277 16 C 0.163 3.837 17 N -0.880 5.880 18 H 0.042 0.958 19 H 0.046 0.954 20 H 0.044 0.956 21 H 0.382 0.618 22 H 0.380 0.620 23 H 0.083 0.917 24 H 0.118 0.882 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 1.526 1.779 5.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.236 4.236 3 C 0.050 3.950 4 N -0.437 5.437 5 C -0.242 4.242 6 C -0.113 4.113 7 C 0.013 3.987 8 C -0.499 4.499 9 H 0.084 0.916 10 C -0.140 4.140 11 N -0.448 5.448 12 Si 0.724 3.276 13 H -0.190 1.190 14 H -0.206 1.206 15 H -0.203 1.203 16 C 0.060 3.940 17 N -0.422 5.422 18 H 0.061 0.939 19 H 0.065 0.935 20 H 0.062 0.938 21 H 0.208 0.792 22 H 0.207 0.793 23 H 0.102 0.898 24 H 0.136 0.864 25 H 0.082 0.918 26 H 0.221 0.779 27 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.229 1.544 1.642 5.694 hybrid contribution 0.313 -0.605 0.032 0.682 sum -4.916 0.938 1.674 5.277 Atomic orbital electron populations 1.20228 0.94134 0.99948 0.99584 1.18246 0.93076 0.91272 1.21001 1.16953 0.90668 0.84697 1.02676 1.42009 1.07400 1.05099 1.89240 1.19829 0.91285 0.97484 1.15602 1.20606 0.99360 0.90527 1.00816 1.17048 0.88186 0.93940 0.99524 1.18939 0.98958 0.95794 1.36200 0.91645 1.25632 0.98449 0.96675 0.93281 1.69884 1.18076 1.32416 1.24461 0.86446 0.80460 0.81966 0.78743 1.19006 1.20620 1.20251 1.17547 0.91484 0.84486 1.00442 1.42013 1.06888 1.05948 1.87368 0.93898 0.93549 0.93752 0.79243 0.79253 0.89838 0.86443 0.91826 0.77938 0.79744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 9.11 36.01 0.33 -1.11 15 2 C -0.23 -5.09 5.91 -104.28 -0.62 -5.71 15 3 C 0.15 3.37 6.74 -83.75 -0.56 2.81 15 4 N -0.89 -15.72 8.95 32.47 0.29 -15.43 15 5 C -0.22 -5.31 9.80 -39.74 -0.39 -5.69 15 6 C -0.09 -2.47 8.61 -39.33 -0.34 -2.81 15 7 C 0.02 0.51 5.57 -106.59 -0.59 -0.09 15 8 C -0.47 -12.61 8.46 -37.98 -0.32 -12.94 15 9 H 0.07 1.69 6.73 -52.49 -0.35 1.33 15 10 C 0.07 1.90 5.14 -17.33 -0.09 1.82 15 11 N -0.82 -22.39 11.00 55.54 0.61 -21.78 15 12 Si 0.90 19.70 29.59 -169.99 -5.03 14.67 15 13 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 14 H -0.28 -6.10 7.11 56.52 0.40 -5.69 15 15 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 16 C 0.16 3.97 6.76 -83.34 -0.56 3.41 15 17 N -0.88 -18.01 8.88 32.69 0.29 -17.72 15 18 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 19 H 0.05 0.75 6.56 -51.93 -0.34 0.41 15 20 H 0.04 0.69 6.53 -51.93 -0.34 0.36 15 21 H 0.38 5.92 8.83 -40.82 -0.36 5.56 15 22 H 0.38 5.85 6.77 -40.82 -0.28 5.57 15 23 H 0.08 1.86 8.06 -52.48 -0.42 1.43 15 24 H 0.12 3.29 6.23 -52.49 -0.33 2.97 15 25 H 0.27 6.84 8.30 -40.82 -0.34 6.50 15 26 H 0.39 7.91 7.07 -40.82 -0.29 7.62 15 27 H 0.38 6.51 6.82 -40.82 -0.28 6.23 15 LS Contribution 225.87 15.07 3.40 3.40 Total: -1.00 -29.41 225.87 -6.13 -35.54 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -2.54 Total: 21.61 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -3.15 Total: -20.31 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 1.19 Total: -54.92 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -29.41 -6.13 -35.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575723611.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.707 kcal (2) G-P(sol) polarization free energy of solvation -29.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds