Wall clock time and date at job start Mon Mar 30 2020 01:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39105 * 120.02041 * 2 1 4 4 N 1.38955 * 119.78689 * 0.02562 * 3 2 1 5 5 C 1.39749 * 120.43523 * 180.02562 * 3 2 1 6 6 C 1.36236 * 120.48469 * 359.97438 * 5 3 2 7 7 C 1.40813 * 120.03190 * 0.02562 * 6 5 3 8 8 C 1.40888 * 120.21860 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99781 * 153.46572 * 8 7 6 10 10 C 1.39831 * 120.00082 * 333.74064 * 8 7 6 11 11 N 1.30965 * 119.99746 * 343.34241 * 10 8 7 12 12 Si 1.86796 * 119.99816 * 163.33654 * 10 8 7 13 13 H 1.48497 * 109.47487 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47057 * 120.00511 * 12 10 8 15 15 H 1.48501 * 109.47266 * 239.99869 * 12 10 8 16 16 C 1.38295 * 120.01580 * 180.26240 * 2 1 3 17 17 N 1.38834 * 120.24160 * 359.97438 * 16 2 1 18 18 H 1.08998 * 109.46844 * 89.99589 * 1 2 3 19 19 H 1.08998 * 109.47083 * 210.00032 * 1 2 3 20 20 H 1.09001 * 109.46505 * 329.99781 * 1 2 3 21 21 H 0.96996 * 120.00465 * 180.02562 * 4 3 2 22 22 H 0.97010 * 119.99741 * 0.02562 * 4 3 2 23 23 H 1.08004 * 119.75596 * 179.97438 * 5 3 2 24 24 H 1.08001 * 119.98680 * 179.97438 * 6 5 3 25 25 H 0.97008 * 119.99766 * 180.02562 * 11 10 8 26 26 H 0.97000 * 120.00286 * 180.23806 * 17 16 2 27 27 H 0.97000 * 120.00534 * 0.23013 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2030 1.2044 0.0000 4 7 1.5042 2.4055 0.0005 5 6 3.6005 1.2146 -0.0005 6 6 4.3001 0.0456 -0.0005 7 6 3.6160 -1.1852 -0.0006 8 6 4.3355 -2.3965 -0.0011 9 1 3.8920 -3.2882 0.4167 10 6 5.6261 -2.4428 -0.5374 11 7 6.0448 -1.4800 -1.3202 12 14 6.7528 -3.8779 -0.1371 13 1 6.0467 -4.8260 0.7616 14 1 7.1312 -4.5752 -1.3925 15 1 7.9761 -3.3738 0.5371 16 6 2.1989 -1.1975 -0.0055 17 7 1.5101 -2.4029 -0.0105 18 1 -0.3633 0.0001 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3632 0.8900 0.5139 21 1 1.9863 3.2472 0.0002 22 1 0.5341 2.4022 0.0013 23 1 4.1297 2.1560 -0.0010 24 1 5.3800 0.0628 -0.0014 25 1 6.9400 -1.5123 -1.6925 26 1 1.9988 -3.2408 -0.0108 27 1 0.5401 -2.4073 -0.0135 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575723611.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:12 Heat of formation + Delta-G solvation = -5.505758 kcal Electronic energy + Delta-G solvation = -11721.101559 eV Core-core repulsion = 9670.021941 eV Total energy + Delta-G solvation = -2051.079619 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.00428 -36.35673 -35.37368 -33.47489 -31.46335 -29.63745 -27.05542 -25.89735 -22.02722 -21.75605 -18.61346 -18.19884 -17.71554 -16.60742 -16.42172 -15.41752 -14.90734 -14.60012 -13.97949 -13.88204 -13.49375 -13.20880 -12.78136 -12.71241 -12.38648 -12.20947 -11.79465 -11.33290 -11.28578 -10.83284 -10.08889 -8.41236 -8.18034 -7.95057 -5.75269 1.21767 1.38466 1.43364 1.56335 1.63868 2.34522 2.96827 3.43171 3.79103 3.94579 4.50251 4.55657 4.85071 4.97395 5.10893 5.20561 5.40834 5.54017 5.75565 5.85808 6.03791 6.27391 6.39182 6.68206 7.07704 7.10345 7.18715 7.42804 7.46101 7.60933 8.67210 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.053295 B = 0.012183 C = 0.010204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.248202 B = 2297.678015 C = 2743.319901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.243 4.243 3 C 0.164 3.836 4 N -0.875 5.875 5 C -0.243 4.243 6 C -0.114 4.114 7 C -0.028 4.028 8 C -0.492 4.492 9 H 0.068 0.932 10 C 0.024 3.976 11 N -0.858 5.858 12 Si 0.971 3.029 13 H -0.259 1.259 14 H -0.275 1.275 15 H -0.275 1.275 16 C 0.160 3.840 17 N -0.868 5.868 18 H 0.054 0.946 19 H 0.060 0.940 20 H 0.066 0.934 21 H 0.395 0.605 22 H 0.396 0.604 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.274 0.726 26 H 0.393 0.607 27 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.295 1.557 2.111 7.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.252 4.252 3 C 0.061 3.939 4 N -0.420 5.420 5 C -0.267 4.267 6 C -0.135 4.135 7 C -0.033 4.033 8 C -0.525 4.525 9 H 0.086 0.914 10 C -0.184 4.184 11 N -0.489 5.489 12 Si 0.794 3.206 13 H -0.183 1.183 14 H -0.201 1.201 15 H -0.201 1.201 16 C 0.055 3.945 17 N -0.410 5.410 18 H 0.073 0.927 19 H 0.079 0.921 20 H 0.085 0.915 21 H 0.222 0.778 22 H 0.226 0.774 23 H 0.114 0.886 24 H 0.110 0.890 25 H 0.084 0.916 26 H 0.222 0.778 27 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.066 1.594 1.980 7.510 hybrid contribution 0.711 -0.488 -0.064 0.864 sum -6.356 1.106 1.916 6.730 Atomic orbital electron populations 1.20268 0.90388 1.01904 1.00917 1.18760 0.95893 0.90461 1.20101 1.17095 0.90232 0.86516 1.00009 1.41891 1.08239 1.04117 1.87717 1.19966 0.92624 0.97159 1.16935 1.20535 0.98469 0.91934 1.02600 1.17374 0.89973 0.94090 1.01899 1.19190 1.00127 0.96104 1.37109 0.91382 1.26452 0.99701 0.99452 0.92844 1.69983 1.18558 1.34551 1.25783 0.85331 0.78143 0.78579 0.78541 1.18311 1.20053 1.20062 1.17771 0.90974 0.86433 0.99295 1.41919 1.07782 1.04910 1.86409 0.92689 0.92073 0.91471 0.77760 0.77412 0.88632 0.88979 0.91636 0.77847 0.77691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.42 9.11 71.24 0.65 -1.78 15 2 C -0.24 -10.35 5.91 -19.64 -0.12 -10.46 15 3 C 0.16 7.06 6.74 38.59 0.26 7.32 15 4 N -0.88 -27.85 8.95 -51.18 -0.46 -28.31 15 5 C -0.24 -11.85 9.80 22.17 0.22 -11.63 15 6 C -0.11 -6.35 8.61 22.43 0.19 -6.16 15 7 C -0.03 -1.53 5.57 -21.14 -0.12 -1.65 15 8 C -0.49 -27.29 8.46 23.30 0.20 -27.09 15 9 H 0.07 3.57 6.73 -2.91 -0.02 3.55 15 10 C 0.02 1.31 5.14 85.21 0.44 1.74 15 11 N -0.86 -48.69 11.00 21.81 0.24 -48.45 15 12 Si 0.97 41.33 29.59 68.60 2.03 43.36 15 13 H -0.26 -10.61 7.11 99.48 0.71 -9.90 15 14 H -0.28 -11.35 7.11 99.48 0.71 -10.64 15 15 H -0.28 -11.50 7.11 99.48 0.71 -10.79 15 16 C 0.16 7.66 6.76 38.91 0.26 7.92 15 17 N -0.87 -34.21 8.88 -50.50 -0.45 -34.66 15 18 H 0.05 1.61 8.14 -2.39 -0.02 1.59 15 19 H 0.06 1.72 6.56 -2.39 -0.02 1.71 15 20 H 0.07 1.78 6.53 -2.39 -0.02 1.77 15 21 H 0.39 10.97 8.83 -92.71 -0.82 10.16 15 22 H 0.40 10.45 6.77 -92.70 -0.63 9.82 15 23 H 0.10 4.27 8.06 -2.91 -0.02 4.24 15 24 H 0.09 5.48 6.23 -2.91 -0.02 5.46 15 25 H 0.27 14.33 8.30 -92.70 -0.77 13.56 15 26 H 0.39 15.53 7.07 -92.71 -0.66 14.88 15 27 H 0.39 12.57 6.82 -92.71 -0.63 11.94 15 Total: -1.00 -64.36 225.87 1.85 -62.50 By element: Atomic # 1 Polarization: 48.82 SS G_CDS: -1.49 Total: 47.33 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 1.98 Total: -41.78 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -0.67 Total: -111.41 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -64.36 1.85 -62.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575723611.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.999 kcal (2) G-P(sol) polarization free energy of solvation -64.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds