Wall clock time and date at job start Mon Mar 30 2020 02:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46884 * 2 1 4 4 C 1.50695 * 109.47190 * 119.99786 * 2 1 3 5 5 N 1.31823 * 120.12933 * 294.18690 * 4 2 1 6 6 C 1.32342 * 120.18138 * 180.02562 * 5 4 2 7 7 C 1.38924 * 120.42607 * 0.02562 * 6 5 4 8 8 N 1.31700 * 120.25169 * 359.97438 * 7 6 5 9 9 C 1.33929 * 119.81343 * 0.02562 * 8 7 6 10 10 C 1.41358 * 120.21019 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00388 * 188.20906 * 10 9 8 12 12 C 1.40071 * 119.99567 * 8.20158 * 10 9 8 13 13 N 1.30720 * 120.00134 * 7.18593 * 12 10 9 14 14 Si 1.86806 * 119.99701 * 187.18602 * 12 10 9 15 15 H 1.48492 * 109.47381 * 84.99318 * 14 12 10 16 16 H 1.48498 * 109.46897 * 204.99251 * 14 12 10 17 17 H 1.48501 * 109.46909 * 324.98868 * 14 12 10 18 18 H 1.08994 * 109.47680 * 299.99640 * 1 2 3 19 19 H 1.09005 * 109.47432 * 60.00501 * 1 2 3 20 20 H 1.09006 * 109.46719 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47048 * 240.00420 * 2 1 3 22 22 H 1.08997 * 109.47211 * 180.02562 * 3 2 1 23 23 H 1.09005 * 109.47104 * 299.99638 * 3 2 1 24 24 H 1.08999 * 109.47358 * 59.99713 * 3 2 1 25 25 H 1.07994 * 119.78604 * 180.02562 * 6 5 4 26 26 H 1.08000 * 119.87536 * 179.72717 * 7 6 5 27 27 H 0.96999 * 119.99410 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 7 1.8125 -0.1994 2.4256 6 6 2.2536 -0.8221 3.5068 7 6 2.9519 -2.0178 3.3944 8 7 3.1810 -2.5434 2.2088 9 6 2.7391 -1.9216 1.1080 10 6 2.9798 -2.4785 -0.1687 11 1 2.7414 -1.9139 -1.0579 12 6 3.5279 -3.7627 -0.2804 13 7 3.6861 -4.5010 0.7867 14 14 4.0326 -4.4203 -1.9545 15 1 5.4080 -3.9602 -2.2730 16 1 3.9997 -5.9048 -1.9336 17 1 3.0911 -3.9189 -2.9876 18 1 -0.3634 0.5137 0.8899 19 1 -0.3634 0.5138 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 3.1299 1.4426 -0.0005 23 1 1.6766 1.9563 -0.8901 24 1 1.6765 1.9564 0.8899 25 1 2.0695 -0.3979 4.4828 26 1 3.3117 -2.5162 4.2824 27 1 4.0653 -5.3904 0.7091 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606247854.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:31 Heat of formation + Delta-G solvation = 23.167479 kcal Electronic energy + Delta-G solvation = -11811.947616 eV Core-core repulsion = 9762.111362 eV Total energy + Delta-G solvation = -2049.836254 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.06999 -34.69435 -34.02181 -31.57873 -29.51350 -26.39345 -25.99590 -23.24435 -21.81167 -19.35360 -17.59406 -16.18393 -14.92689 -14.81178 -14.07681 -13.36555 -13.18918 -12.88899 -12.22062 -12.02344 -11.48461 -11.47904 -11.33256 -10.98963 -10.46535 -10.42294 -10.34372 -9.77053 -9.58008 -9.39948 -8.99622 -7.70838 -7.33067 -6.53796 -4.64069 2.55256 2.97399 3.02428 3.04781 3.20698 3.84553 4.65891 5.56313 5.67409 5.75318 6.03761 6.09892 6.11796 6.28590 6.36723 6.56011 6.57759 6.61560 6.64966 6.97815 7.02455 7.08525 7.12211 7.34046 7.71046 8.08326 8.44979 8.68442 9.31489 9.88685 10.14522 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.034512 B = 0.015426 C = 0.011512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.115319 B = 1814.684923 C = 2431.641559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.023 4.023 3 C -0.133 4.133 4 C -0.027 4.027 5 N -0.425 5.425 6 C -0.124 4.124 7 C 0.076 3.924 8 N -0.461 5.461 9 C 0.216 3.784 10 C -0.419 4.419 11 H 0.095 0.905 12 C 0.069 3.931 13 N -0.716 5.716 14 Si 0.910 3.090 15 H -0.266 1.266 16 H -0.276 1.276 17 H -0.259 1.259 18 H 0.052 0.948 19 H 0.043 0.957 20 H 0.048 0.952 21 H 0.084 0.916 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.123 0.877 26 H 0.126 0.874 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 2.631 -2.882 4.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.043 4.043 3 C -0.191 4.191 4 C -0.178 4.178 5 N -0.137 5.137 6 C -0.282 4.282 7 C -0.092 4.092 8 N -0.178 5.178 9 C 0.089 3.911 10 C -0.451 4.451 11 H 0.112 0.888 12 C -0.157 4.157 13 N -0.336 5.336 14 Si 0.733 3.267 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.183 1.183 18 H 0.071 0.929 19 H 0.062 0.938 20 H 0.067 0.933 21 H 0.102 0.898 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.141 0.859 26 H 0.144 0.856 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.200 2.378 -2.756 3.834 hybrid contribution 0.303 -0.447 -0.392 0.667 sum -0.897 1.932 -3.148 3.801 Atomic orbital electron populations 1.21720 0.95840 1.01057 1.00390 1.19699 0.94613 0.94615 0.95380 1.21728 1.00409 0.96392 1.00524 1.21576 1.06014 0.97869 0.92324 1.67405 1.15689 1.31988 0.98618 1.22505 1.10729 0.98726 0.96271 1.23376 0.95383 0.93379 0.97038 1.69454 1.20989 1.30631 0.96747 1.19233 0.89347 0.89243 0.93250 1.19706 1.34022 0.99107 0.92244 0.88767 1.26132 0.94253 0.96947 0.98401 1.70022 1.26095 1.07713 1.29798 0.86296 0.80131 0.78322 0.81925 1.19089 1.20050 1.18297 0.92916 0.93807 0.93264 0.89826 0.93568 0.93918 0.92579 0.85906 0.85611 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.15 37.16 0.34 -2.12 15 2 C -0.02 -0.49 3.03 -91.78 -0.28 -0.77 15 3 C -0.13 -2.44 9.05 37.16 0.34 -2.10 15 4 C -0.03 -0.67 5.53 -81.64 -0.45 -1.12 15 5 N -0.42 -10.52 9.99 -8.59 -0.09 -10.61 15 6 C -0.12 -2.95 11.23 -17.08 -0.19 -3.14 15 7 C 0.08 1.88 11.22 -17.35 -0.19 1.69 15 8 N -0.46 -12.83 8.17 -10.94 -0.09 -12.92 15 9 C 0.22 5.88 6.51 -84.81 -0.55 5.33 15 10 C -0.42 -10.87 8.74 -37.71 -0.33 -11.20 15 11 H 0.09 2.24 5.67 -52.49 -0.30 1.94 15 12 C 0.07 1.71 5.47 -17.34 -0.09 1.62 15 13 N -0.72 -18.74 11.60 55.55 0.64 -18.10 15 14 Si 0.91 18.01 29.57 -169.99 -5.03 12.98 15 15 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 16 H -0.28 -5.34 7.11 56.52 0.40 -4.93 15 17 H -0.26 -4.98 7.11 56.52 0.40 -4.57 15 18 H 0.05 1.00 8.14 -51.93 -0.42 0.57 15 19 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.08 1.73 5.50 -51.93 -0.29 1.45 15 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.06 1.05 7.95 -51.93 -0.41 0.64 15 25 H 0.12 2.52 8.06 -52.49 -0.42 2.10 15 26 H 0.13 2.68 8.06 -52.49 -0.42 2.25 15 27 H 0.28 6.55 8.29 -40.82 -0.34 6.21 15 LS Contribution 234.83 15.07 3.54 3.54 Total: -1.00 -29.11 234.83 -5.52 -34.63 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -3.09 Total: 2.29 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -1.42 Total: -11.82 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.47 Total: -41.62 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -29.11 -5.52 -34.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606247854.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.800 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds