Wall clock time and date at job start Mon Mar 30 2020 02:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46884 * 2 1 4 4 C 1.50695 * 109.47190 * 119.99786 * 2 1 3 5 5 N 1.31823 * 120.12933 * 294.18690 * 4 2 1 6 6 C 1.32342 * 120.18138 * 180.02562 * 5 4 2 7 7 C 1.38924 * 120.42607 * 0.02562 * 6 5 4 8 8 N 1.31700 * 120.25169 * 359.97438 * 7 6 5 9 9 C 1.33929 * 119.81343 * 0.02562 * 8 7 6 10 10 C 1.41358 * 120.21019 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00388 * 188.20906 * 10 9 8 12 12 C 1.40071 * 119.99567 * 8.20158 * 10 9 8 13 13 N 1.30720 * 120.00134 * 7.18593 * 12 10 9 14 14 Si 1.86806 * 119.99701 * 187.18602 * 12 10 9 15 15 H 1.48492 * 109.47381 * 84.99318 * 14 12 10 16 16 H 1.48498 * 109.46897 * 204.99251 * 14 12 10 17 17 H 1.48501 * 109.46909 * 324.98868 * 14 12 10 18 18 H 1.08994 * 109.47680 * 299.99640 * 1 2 3 19 19 H 1.09005 * 109.47432 * 60.00501 * 1 2 3 20 20 H 1.09006 * 109.46719 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47048 * 240.00420 * 2 1 3 22 22 H 1.08997 * 109.47211 * 180.02562 * 3 2 1 23 23 H 1.09005 * 109.47104 * 299.99638 * 3 2 1 24 24 H 1.08999 * 109.47358 * 59.99713 * 3 2 1 25 25 H 1.07994 * 119.78604 * 180.02562 * 6 5 4 26 26 H 1.08000 * 119.87536 * 179.72717 * 7 6 5 27 27 H 0.96999 * 119.99410 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 7 1.8125 -0.1994 2.4256 6 6 2.2536 -0.8221 3.5068 7 6 2.9519 -2.0178 3.3944 8 7 3.1810 -2.5434 2.2088 9 6 2.7391 -1.9216 1.1080 10 6 2.9798 -2.4785 -0.1687 11 1 2.7414 -1.9139 -1.0579 12 6 3.5279 -3.7627 -0.2804 13 7 3.6861 -4.5010 0.7867 14 14 4.0326 -4.4203 -1.9545 15 1 5.4080 -3.9602 -2.2730 16 1 3.9997 -5.9048 -1.9336 17 1 3.0911 -3.9189 -2.9876 18 1 -0.3634 0.5137 0.8899 19 1 -0.3634 0.5138 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 3.1299 1.4426 -0.0005 23 1 1.6766 1.9563 -0.8901 24 1 1.6765 1.9564 0.8899 25 1 2.0695 -0.3979 4.4828 26 1 3.3117 -2.5162 4.2824 27 1 4.0653 -5.3904 0.7091 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606247854.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:30 Heat of formation + Delta-G solvation = 4.928879 kcal Electronic energy + Delta-G solvation = -11812.738501 eV Core-core repulsion = 9762.111362 eV Total energy + Delta-G solvation = -2050.627139 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.95762 -36.36923 -35.89981 -33.48608 -31.35896 -27.93349 -27.83919 -25.06142 -23.71496 -21.05839 -19.50014 -18.02854 -16.77454 -16.58256 -15.79133 -15.08751 -14.90766 -14.55417 -13.95216 -13.63326 -13.25957 -13.01238 -12.86550 -12.70933 -12.04517 -11.98640 -11.95053 -11.60092 -11.42070 -11.18915 -10.89391 -9.62111 -9.23556 -8.40148 -6.58455 0.67371 1.13195 1.40961 1.54166 1.56189 2.19496 2.79685 3.79544 3.86926 4.10316 4.27606 4.44271 4.52412 4.63168 4.75652 4.91985 4.97116 5.08927 5.11067 5.19809 5.27471 5.42506 5.52564 5.62588 5.84206 6.19348 6.55547 6.75584 7.39857 7.95978 8.33220 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.034512 B = 0.015426 C = 0.011512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.115319 B = 1814.684923 C = 2431.641559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.029 4.029 3 C -0.124 4.124 4 C -0.035 4.035 5 N -0.435 5.435 6 C -0.128 4.128 7 C 0.060 3.940 8 N -0.499 5.499 9 C 0.179 3.821 10 C -0.443 4.443 11 H 0.108 0.892 12 C 0.023 3.977 13 N -0.757 5.757 14 Si 0.990 3.010 15 H -0.262 1.262 16 H -0.269 1.269 17 H -0.246 1.246 18 H 0.045 0.955 19 H 0.080 0.920 20 H 0.033 0.967 21 H 0.082 0.918 22 H 0.034 0.966 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.155 0.845 26 H 0.152 0.848 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.573 3.207 -4.277 5.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.048 4.048 3 C -0.181 4.181 4 C -0.186 4.186 5 N -0.148 5.148 6 C -0.285 4.285 7 C -0.106 4.106 8 N -0.217 5.217 9 C 0.052 3.948 10 C -0.475 4.475 11 H 0.126 0.874 12 C -0.200 4.200 13 N -0.378 5.378 14 Si 0.809 3.191 15 H -0.187 1.187 16 H -0.194 1.194 17 H -0.169 1.169 18 H 0.064 0.936 19 H 0.099 0.901 20 H 0.052 0.948 21 H 0.100 0.900 22 H 0.053 0.947 23 H 0.097 0.903 24 H 0.067 0.933 25 H 0.173 0.827 26 H 0.169 0.831 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.502 2.976 -4.124 5.303 hybrid contribution 0.373 -0.590 0.137 0.712 sum -1.129 2.385 -3.987 4.782 Atomic orbital electron populations 1.21645 0.94113 1.00537 1.01864 1.19837 0.96036 0.95600 0.93345 1.21645 0.99667 0.94901 1.01929 1.22172 1.05128 0.97491 0.93813 1.67514 1.16151 1.32199 0.98917 1.23031 1.09673 0.98372 0.97456 1.23843 0.95601 0.94026 0.97179 1.69394 1.22407 1.32051 0.97863 1.19774 0.90495 0.90598 0.93895 1.20134 1.34774 1.00140 0.92424 0.87392 1.27137 0.93528 0.96677 1.02622 1.70118 1.26888 1.08376 1.32441 0.85102 0.79777 0.77702 0.76542 1.18708 1.19355 1.16943 0.93557 0.90146 0.94777 0.89988 0.94657 0.90329 0.93283 0.82729 0.83065 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.38 9.15 71.98 0.66 -3.72 15 2 C -0.03 -1.15 3.03 -11.54 -0.03 -1.19 15 3 C -0.12 -4.29 9.05 71.98 0.65 -3.64 15 4 C -0.04 -1.75 5.53 43.18 0.24 -1.51 15 5 N -0.44 -21.39 9.99 -181.09 -1.81 -23.20 15 6 C -0.13 -6.00 11.23 84.78 0.95 -5.05 15 7 C 0.06 2.99 11.22 84.88 0.95 3.94 15 8 N -0.50 -28.32 8.17 -188.52 -1.54 -29.87 15 9 C 0.18 9.90 6.51 40.21 0.26 10.16 15 10 C -0.44 -23.12 8.74 23.48 0.21 -22.91 15 11 H 0.11 5.10 5.67 -2.91 -0.02 5.08 15 12 C 0.02 1.13 5.47 85.30 0.47 1.60 15 13 N -0.76 -40.22 11.60 21.84 0.25 -39.96 15 14 Si 0.99 36.36 29.57 68.60 2.03 38.39 15 15 H -0.26 -9.42 7.11 99.48 0.71 -8.72 15 16 H -0.27 -9.49 7.11 99.48 0.71 -8.79 15 17 H -0.25 -8.46 7.11 99.48 0.71 -7.75 15 18 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 19 H 0.08 2.23 8.14 -2.38 -0.02 2.21 15 20 H 0.03 1.27 8.14 -2.38 -0.02 1.25 15 21 H 0.08 3.30 5.50 -2.39 -0.01 3.29 15 22 H 0.03 1.27 8.14 -2.39 -0.02 1.25 15 23 H 0.08 2.14 8.14 -2.38 -0.02 2.12 15 24 H 0.05 1.75 7.95 -2.39 -0.02 1.73 15 25 H 0.16 6.08 8.06 -2.91 -0.02 6.05 15 26 H 0.15 6.41 8.06 -2.91 -0.02 6.38 15 27 H 0.28 13.58 8.29 -92.71 -0.77 12.81 15 Total: -1.00 -62.81 234.83 4.44 -58.37 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 1.16 Total: 18.59 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 4.35 Total: -22.32 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -3.10 Total: -93.03 kcal Atomic # 14 Polarization: 36.36 SS G_CDS: 2.03 Total: 38.39 kcal Total: -62.81 4.44 -58.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606247854.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.299 kcal (2) G-P(sol) polarization free energy of solvation -62.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds