Wall clock time and date at job start Mon Mar 30 2020 02:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47328 * 2 1 4 4 C 1.50699 * 109.47633 * 179.97438 * 3 2 1 5 5 N 1.31821 * 120.12437 * 89.99761 * 4 3 2 6 6 C 1.32344 * 120.17756 * 180.02562 * 5 4 3 7 7 C 1.38930 * 120.42515 * 359.97438 * 6 5 4 8 8 N 1.31700 * 120.25324 * 0.02562 * 7 6 5 9 9 C 1.33928 * 119.81272 * 0.02562 * 8 7 6 10 10 C 1.41357 * 120.21044 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00202 * 174.13656 * 10 9 8 12 12 C 1.40068 * 119.99341 * 354.13638 * 10 9 8 13 13 N 1.30719 * 120.00780 * 6.37659 * 12 10 9 14 14 Si 1.86809 * 119.99742 * 186.38267 * 12 10 9 15 15 H 1.48504 * 109.47137 * 94.97766 * 14 12 10 16 16 H 1.48495 * 109.47129 * 214.98354 * 14 12 10 17 17 H 1.48505 * 109.46840 * 334.98010 * 14 12 10 18 18 H 1.08995 * 109.47017 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.47339 * 299.99864 * 1 2 3 20 20 H 1.09001 * 109.47147 * 59.99719 * 1 2 3 21 21 H 1.08998 * 109.47339 * 240.00136 * 2 1 3 22 22 H 1.09001 * 109.47147 * 120.00281 * 2 1 3 23 23 H 1.08998 * 109.46799 * 59.99805 * 3 2 1 24 24 H 1.09001 * 109.47236 * 300.00226 * 3 2 1 25 25 H 1.07996 * 119.78385 * 180.02562 * 6 5 4 26 26 H 1.08000 * 119.86792 * 179.72327 * 7 6 5 27 27 H 0.96991 * 120.00572 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.2091 1.4424 -1.1393 6 6 5.5325 1.4419 -1.1399 7 6 6.2367 1.4422 0.0577 8 7 5.5923 1.4424 1.2063 9 6 4.2531 1.4418 1.2185 10 6 3.5529 1.4425 2.4464 11 1 2.4772 1.5376 2.4547 12 6 4.2545 1.3199 3.6525 13 7 5.5616 1.3303 3.6525 14 14 3.3221 1.1415 5.2614 15 1 3.1914 -0.2984 5.6007 16 1 4.0625 1.8397 6.3428 17 1 1.9709 1.7412 5.1196 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 1.6766 1.9563 0.8900 24 1 1.6767 1.9564 -0.8900 25 1 6.0685 1.4422 -2.0775 26 1 7.3166 1.4373 0.0467 27 1 6.0474 1.2450 4.4876 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699532982.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:33 Heat of formation + Delta-G solvation = 1.278278 kcal Electronic energy + Delta-G solvation = -11682.854518 eV Core-core repulsion = 9632.069077 eV Total energy + Delta-G solvation = -2050.785441 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.90201 -36.11715 -35.87604 -33.67099 -32.04568 -28.40097 -27.42611 -24.02839 -23.38953 -21.77663 -19.51564 -18.05310 -16.82733 -16.46714 -15.75468 -15.51256 -15.07545 -14.50858 -13.97572 -13.56603 -13.23155 -13.11097 -12.93529 -12.42065 -12.09136 -12.01862 -11.81888 -11.58500 -11.43518 -11.36604 -10.89861 -9.61925 -9.27837 -8.36374 -6.60688 0.65362 1.11577 1.41086 1.54006 1.56536 2.19295 2.79007 3.76652 3.89929 4.13511 4.27516 4.40784 4.44834 4.57623 4.76503 4.86255 4.92797 5.12518 5.15306 5.21590 5.25226 5.40328 5.52582 5.58877 5.82596 6.16981 6.54266 6.75365 7.38098 7.95449 8.32874 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.026882 B = 0.017208 C = 0.010873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.356901 B = 1626.798929 C = 2574.589833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C -0.033 4.033 4 C -0.047 4.047 5 N -0.445 5.445 6 C -0.130 4.130 7 C 0.062 3.938 8 N -0.496 5.496 9 C 0.178 3.822 10 C -0.433 4.433 11 H 0.108 0.892 12 C 0.019 3.981 13 N -0.751 5.751 14 Si 0.989 3.011 15 H -0.263 1.263 16 H -0.269 1.269 17 H -0.245 1.245 18 H 0.064 0.936 19 H 0.061 0.939 20 H 0.061 0.939 21 H 0.043 0.957 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.156 0.844 26 H 0.154 0.846 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.105 -1.368 0.427 6.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.072 4.072 4 C -0.198 4.198 5 N -0.158 5.158 6 C -0.287 4.287 7 C -0.105 4.105 8 N -0.214 5.214 9 C 0.051 3.949 10 C -0.465 4.465 11 H 0.126 0.874 12 C -0.203 4.203 13 N -0.372 5.372 14 Si 0.808 3.192 15 H -0.188 1.188 16 H -0.193 1.193 17 H -0.168 1.168 18 H 0.083 0.917 19 H 0.080 0.920 20 H 0.080 0.920 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.093 0.907 24 H 0.082 0.918 25 H 0.173 0.827 26 H 0.171 0.829 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.851 -1.362 0.542 6.032 hybrid contribution 0.481 -0.048 0.392 0.622 sum -5.369 -1.410 0.933 5.629 Atomic orbital electron populations 1.21710 0.93405 1.02247 1.02341 1.21347 0.97121 0.95633 1.00556 1.20095 0.87740 0.97755 1.01572 1.22269 0.97752 1.10534 0.89199 1.67581 1.09580 1.08329 1.30331 1.23032 0.90796 1.16029 0.98826 1.23890 1.01263 0.95129 0.90232 1.69489 1.08782 1.16842 1.26290 1.19754 0.89460 0.91239 0.94405 1.20144 0.95905 1.40888 0.89515 0.87433 1.27181 0.95719 0.92533 1.04905 1.70191 1.09260 1.28012 1.29770 0.85082 0.79492 0.79489 0.75120 1.18779 1.19330 1.16833 0.91733 0.92026 0.92038 0.93813 0.93478 0.90741 0.91836 0.82692 0.82909 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.02 15 2 C -0.11 -3.90 5.92 30.59 0.18 -3.72 15 3 C -0.03 -1.35 5.06 29.85 0.15 -1.20 15 4 C -0.05 -2.36 6.11 43.18 0.26 -2.10 15 5 N -0.45 -22.45 10.41 -181.08 -1.88 -24.34 15 6 C -0.13 -6.15 11.23 84.78 0.95 -5.20 15 7 C 0.06 3.07 11.22 84.88 0.95 4.03 15 8 N -0.50 -28.15 8.07 -188.51 -1.52 -29.67 15 9 C 0.18 9.82 6.54 40.21 0.26 10.08 15 10 C -0.43 -22.41 8.70 23.48 0.20 -22.21 15 11 H 0.11 5.04 6.00 -2.91 -0.02 5.02 15 12 C 0.02 0.95 5.49 85.30 0.47 1.42 15 13 N -0.75 -39.65 11.52 21.84 0.25 -39.40 15 14 Si 0.99 36.06 29.57 68.60 2.03 38.09 15 15 H -0.26 -9.34 7.11 99.48 0.71 -8.63 15 16 H -0.27 -9.45 7.11 99.48 0.71 -8.74 15 17 H -0.25 -8.36 7.11 99.48 0.71 -7.66 15 18 H 0.06 1.50 8.14 -2.39 -0.02 1.48 15 19 H 0.06 1.54 8.14 -2.39 -0.02 1.52 15 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 15 21 H 0.04 1.63 8.14 -2.39 -0.02 1.62 15 22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 15 23 H 0.07 2.95 6.27 -2.39 -0.01 2.94 15 24 H 0.06 2.44 8.14 -2.39 -0.02 2.42 15 25 H 0.16 6.16 8.06 -2.91 -0.02 6.14 15 26 H 0.15 6.47 8.06 -2.91 -0.02 6.45 15 27 H 0.28 13.42 8.29 -92.71 -0.77 12.66 15 Total: -1.00 -62.89 236.59 4.18 -58.71 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 1.16 Total: 18.52 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 4.15 Total: -21.92 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -3.16 Total: -93.40 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 2.03 Total: 38.09 kcal Total: -62.89 4.18 -58.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699532982.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.988 kcal (2) G-P(sol) polarization free energy of solvation -62.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds