Wall clock time and date at job start Mon Mar 30 2020 01:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31879 * 119.61741 * 2 1 4 4 C 1.31857 * 121.72569 * 179.97438 * 3 2 1 5 5 C 1.38224 * 120.76155 * 359.97438 * 4 3 2 6 6 C 1.38630 * 119.16347 * 0.02562 * 5 4 3 7 7 C 1.38181 * 119.61274 * 180.23600 * 2 1 3 8 8 C 1.50699 * 120.42260 * 0.02562 * 7 2 1 9 9 N 1.46498 * 109.47178 * 80.27378 * 8 7 2 10 10 C 1.36935 * 120.00127 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99571 * 359.97438 * 10 9 8 12 12 C 1.38813 * 119.99969 * 180.02562 * 10 9 8 13 13 N 1.31625 * 119.99729 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00094 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47188 * 90.00297 * 14 12 10 16 16 H 1.48508 * 109.46944 * 210.00445 * 14 12 10 17 17 H 1.48496 * 109.47096 * 329.99964 * 14 12 10 18 18 H 1.09002 * 109.47409 * 89.99775 * 1 2 3 19 19 H 1.08999 * 109.47462 * 209.99888 * 1 2 3 20 20 H 1.08998 * 109.46992 * 330.00348 * 1 2 3 21 21 H 1.07997 * 119.62057 * 179.97438 * 4 3 2 22 22 H 1.07998 * 120.41893 * 179.97438 * 5 4 3 23 23 H 1.08002 * 120.78834 * 179.97438 * 6 5 4 24 24 H 1.09006 * 109.46828 * 200.27690 * 8 7 2 25 25 H 1.09008 * 109.46872 * 320.27383 * 8 7 2 26 26 H 0.97001 * 120.00139 * 359.97438 * 9 8 7 27 27 H 0.96991 * 119.99739 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 0.0005 5 6 4.2266 0.0340 0.0016 6 6 3.5765 -1.1904 0.0016 7 6 2.1898 -1.2013 -0.0049 8 6 1.4371 -2.5069 -0.0109 9 7 0.9916 -2.8075 -1.3737 10 6 0.2822 -3.9514 -1.6255 11 1 0.0515 -4.6321 -0.8194 12 6 -0.1395 -4.2364 -2.9170 13 7 -0.8209 -5.3362 -3.1590 14 14 0.2602 -3.0593 -4.3112 15 1 1.5616 -3.4358 -4.9192 16 1 -0.8070 -3.1318 -5.3415 17 1 0.3433 -1.6746 -3.7814 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 3.9753 2.1528 0.0001 22 1 5.3056 0.0802 0.0016 23 1 4.1367 -2.1137 0.0020 24 1 2.0907 -3.3046 0.3421 25 1 0.5706 -2.4297 0.6460 26 1 1.1985 -2.1959 -2.0977 27 1 -1.1159 -5.5352 -4.0613 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707832321.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:12 Heat of formation + Delta-G solvation = 22.199965 kcal Electronic energy + Delta-G solvation = -11507.450323 eV Core-core repulsion = 9457.572115 eV Total energy + Delta-G solvation = -2049.878208 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.27098 -37.03308 -34.32999 -33.88276 -32.45245 -28.92622 -27.47716 -24.52278 -23.40298 -22.35264 -19.87482 -17.67564 -17.22951 -16.71513 -16.22188 -15.56472 -15.01716 -14.73841 -14.37556 -13.92319 -13.86682 -13.48465 -13.35341 -13.02528 -12.85594 -12.32049 -12.05180 -11.83824 -11.04881 -10.70773 -10.38421 -9.77630 -9.33386 -8.04881 -5.38412 0.14617 0.34312 1.35520 1.36555 1.44308 2.45104 2.80567 3.26697 3.42839 3.77215 3.84435 3.97222 4.03821 4.16198 4.58754 4.65088 4.72442 4.78098 4.85431 4.93051 5.21232 5.25406 5.45581 5.73062 5.82644 6.18782 7.03088 7.05150 7.78526 7.98389 9.16510 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.048122 B = 0.010459 C = 0.010377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.716922 B = 2676.499140 C = 2697.627278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.123 3.877 3 N -0.512 5.512 4 C 0.091 3.909 5 C -0.173 4.173 6 C -0.068 4.068 7 C -0.157 4.157 8 C 0.197 3.803 9 N -0.750 5.750 10 C -0.232 4.232 11 H 0.064 0.936 12 C -0.056 4.056 13 N -0.980 5.980 14 Si 0.948 3.052 15 H -0.279 1.279 16 H -0.293 1.293 17 H -0.261 1.261 18 H 0.066 0.934 19 H 0.078 0.922 20 H 0.084 0.916 21 H 0.187 0.813 22 H 0.171 0.829 23 H 0.148 0.852 24 H 0.040 0.960 25 H 0.043 0.957 26 H 0.363 0.637 27 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.028 12.972 6.449 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.014 4.014 3 N -0.222 5.222 4 C -0.066 4.066 5 C -0.193 4.193 6 C -0.094 4.094 7 C -0.160 4.160 8 C 0.071 3.929 9 N -0.395 5.395 10 C -0.362 4.362 11 H 0.082 0.918 12 C -0.248 4.248 13 N -0.631 5.631 14 Si 0.776 3.224 15 H -0.205 1.205 16 H -0.219 1.219 17 H -0.186 1.186 18 H 0.085 0.915 19 H 0.096 0.904 20 H 0.102 0.898 21 H 0.204 0.796 22 H 0.188 0.812 23 H 0.166 0.834 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.195 0.805 27 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.436 13.545 6.524 17.750 hybrid contribution 0.347 -0.644 -1.055 1.284 sum 9.783 12.900 5.469 17.089 Atomic orbital electron populations 1.20717 0.88739 1.03613 1.02834 1.21307 0.97530 0.88035 0.94519 1.67552 1.11562 1.29075 1.13992 1.23351 0.88882 1.00220 0.94164 1.22465 1.03059 0.92210 1.01522 1.21865 0.93114 1.00154 0.94264 1.20948 0.95594 0.96010 1.03426 1.19617 0.95749 0.91103 0.86412 1.42666 1.67004 1.24376 1.05458 1.19041 1.25380 0.97591 0.94219 0.91819 1.25378 1.00714 0.99015 0.99689 1.69860 1.44518 1.27705 1.21001 0.85508 0.77437 0.79719 0.79714 1.20513 1.21909 1.18583 0.91518 0.90356 0.89753 0.79627 0.81194 0.83379 0.94156 0.93899 0.80470 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.20 9.76 71.24 0.70 -2.50 15 2 C 0.12 4.03 6.78 42.54 0.29 4.32 15 3 N -0.51 -15.57 10.27 -183.89 -1.89 -17.46 15 4 C 0.09 2.12 11.18 84.69 0.95 3.07 15 5 C -0.17 -3.69 10.11 22.36 0.23 -3.47 15 6 C -0.07 -1.81 9.82 22.47 0.22 -1.59 15 7 C -0.16 -5.17 5.27 -19.77 -0.10 -5.28 15 8 C 0.20 7.56 5.80 85.63 0.50 8.05 15 9 N -0.75 -35.27 5.40 -347.16 -1.87 -37.15 15 10 C -0.23 -13.14 10.47 84.03 0.88 -12.26 15 11 H 0.06 3.91 8.06 -2.91 -0.02 3.88 15 12 C -0.06 -3.31 5.50 84.86 0.47 -2.84 15 13 N -0.98 -62.62 13.97 21.65 0.30 -62.32 15 14 Si 0.95 46.17 27.74 68.60 1.90 48.07 15 15 H -0.28 -13.26 7.11 99.48 0.71 -12.55 15 16 H -0.29 -14.31 7.11 99.48 0.71 -13.60 15 17 H -0.26 -11.83 6.52 99.48 0.65 -11.18 15 18 H 0.07 2.24 8.14 -2.39 -0.02 2.22 15 19 H 0.08 2.49 6.12 -2.39 -0.01 2.48 15 20 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 21 H 0.19 2.86 8.06 -2.91 -0.02 2.83 15 22 H 0.17 2.25 8.06 -2.91 -0.02 2.23 15 23 H 0.15 3.47 8.06 -2.91 -0.02 3.44 15 24 H 0.04 1.52 8.03 -2.38 -0.02 1.50 15 25 H 0.04 1.65 6.41 -2.38 -0.02 1.63 15 26 H 0.36 16.89 5.52 -92.71 -0.51 16.38 15 27 H 0.26 15.75 8.31 -92.71 -0.77 14.98 15 Total: -1.00 -67.98 235.71 3.16 -64.82 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.60 Total: 16.52 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 4.12 Total: -12.49 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -3.46 Total: -116.93 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.90 Total: 48.07 kcal Total: -67.98 3.16 -64.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707832321.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.018 kcal (2) G-P(sol) polarization free energy of solvation -67.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds