Wall clock time and date at job start Mon Mar 30 2020 02:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47175 * 2 1 4 4 C 1.50692 * 109.46871 * 179.97438 * 3 2 1 5 5 N 1.32057 * 118.97314 * 90.00706 * 4 3 2 6 6 C 1.32432 * 121.28760 * 179.97438 * 5 4 3 7 7 C 1.38325 * 119.25172 * 359.97438 * 6 5 4 8 8 C 1.40894 * 118.15713 * 0.02562 * 7 6 5 9 9 C 1.41555 * 120.65956 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00409 * 6.35478 * 9 8 7 11 11 C 1.40118 * 119.99687 * 186.35690 * 9 8 7 12 12 N 1.30672 * 119.99718 * 176.57400 * 11 9 8 13 13 Si 1.86800 * 120.00258 * 356.29730 * 11 9 8 14 14 H 1.48493 * 109.47067 * 180.28000 * 13 11 9 15 15 H 1.48504 * 109.46899 * 300.27939 * 13 11 9 16 16 H 1.48498 * 109.46865 * 60.27451 * 13 11 9 17 17 N 1.31375 * 118.98605 * 270.25877 * 4 3 2 18 18 H 1.08999 * 109.46986 * 59.99247 * 1 2 3 19 19 H 1.08990 * 109.47188 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.46549 * 299.99571 * 1 2 3 21 21 H 1.09005 * 109.46405 * 240.00706 * 2 1 3 22 22 H 1.08994 * 109.46999 * 120.00277 * 2 1 3 23 23 H 1.09008 * 109.46569 * 60.00566 * 3 2 1 24 24 H 1.08997 * 109.47071 * 300.00463 * 3 2 1 25 25 H 1.08006 * 120.37489 * 180.02562 * 6 5 4 26 26 H 1.08002 * 120.91820 * 179.97438 * 7 6 5 27 27 H 0.96999 * 120.00060 * 355.03319 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.1872 1.4424 -1.1544 6 6 5.5105 1.4428 -1.2073 7 6 6.2341 1.4439 -0.0284 8 6 5.5232 1.4439 1.1880 9 6 6.2103 1.4444 2.4256 10 1 7.2851 1.5483 2.4466 11 6 5.4960 1.3101 3.6235 12 7 6.1351 1.2433 4.7613 13 14 3.6298 1.2343 3.5948 14 1 3.1184 1.0989 4.9823 15 1 3.0931 2.4794 2.9888 16 1 3.1943 0.0647 2.7902 17 7 4.1832 1.4374 1.1501 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3632 0.5138 0.8900 21 1 1.8933 -0.5138 -0.8901 22 1 1.8934 -0.5138 0.8899 23 1 1.6768 1.9563 0.8901 24 1 1.6767 1.9564 -0.8899 25 1 6.0189 1.4432 -2.1602 26 1 7.3140 1.4439 -0.0402 27 1 7.1046 1.2140 4.7720 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953018069.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:18 Heat of formation + Delta-G solvation = -15.331785 kcal Electronic energy + Delta-G solvation = -11679.832516 eV Core-core repulsion = 9628.326809 eV Total energy + Delta-G solvation = -2051.505707 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.28079 -36.55313 -35.73544 -33.96604 -32.53277 -28.48815 -28.03934 -24.32736 -23.22648 -21.86393 -20.65379 -18.02484 -17.15337 -16.23082 -15.87830 -15.56689 -15.41346 -14.92513 -14.36229 -13.94973 -13.81175 -13.04106 -12.92214 -12.72391 -12.14045 -12.00865 -11.82621 -11.61051 -11.33816 -11.14630 -10.90836 -10.09460 -9.72467 -9.22868 -7.10629 0.49497 0.63557 1.56560 1.69426 2.00222 2.40558 2.60500 3.39314 3.44819 3.71001 4.18080 4.23693 4.31905 4.42579 4.65162 4.78483 4.81792 4.99216 5.01817 5.03395 5.22100 5.25479 5.32778 5.46661 5.61645 5.83138 6.17502 6.44027 6.71498 7.70747 7.83512 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.032079 B = 0.017237 C = 0.011663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.632521 B = 1624.047072 C = 2400.252608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.050 4.050 4 C 0.329 3.671 5 N -0.613 5.613 6 C 0.151 3.849 7 C -0.332 4.332 8 C 0.245 3.755 9 C -0.492 4.492 10 H 0.075 0.925 11 C 0.019 3.981 12 N -0.813 5.813 13 Si 1.184 2.816 14 H -0.326 1.326 15 H -0.287 1.287 16 H -0.285 1.285 17 N -0.619 5.619 18 H 0.070 0.930 19 H 0.067 0.933 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.042 0.958 23 H 0.079 0.921 24 H 0.101 0.899 25 H 0.180 0.820 26 H 0.126 0.874 27 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.384 -1.127 -7.062 10.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.089 4.089 4 C 0.060 3.940 5 N -0.336 5.336 6 C -0.005 4.005 7 C -0.357 4.357 8 C 0.118 3.882 9 C -0.526 4.526 10 H 0.093 0.907 11 C -0.200 4.200 12 N -0.435 5.435 13 Si 1.017 2.983 14 H -0.260 1.260 15 H -0.215 1.215 16 H -0.214 1.214 17 N -0.346 5.346 18 H 0.089 0.911 19 H 0.086 0.914 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.061 0.939 23 H 0.097 0.903 24 H 0.119 0.881 25 H 0.197 0.803 26 H 0.144 0.856 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.443 -1.194 -6.083 11.295 hybrid contribution 3.355 0.154 -0.675 3.425 sum -6.088 -1.040 -6.758 9.155 Atomic orbital electron populations 1.21716 0.92550 1.02726 1.02817 1.21413 0.98072 0.94393 1.01293 1.20508 0.85127 0.99423 1.03870 1.23304 0.98254 0.88479 0.84011 1.68208 1.10330 1.26258 1.28802 1.23078 0.89814 0.89464 0.98193 1.22529 1.01134 1.17971 0.94112 1.19090 0.88357 0.86438 0.94347 1.20874 0.95948 1.44086 0.91713 0.90730 1.28540 1.12932 0.88089 0.90426 1.70634 1.12724 1.31705 1.28483 0.81462 0.67421 0.79244 0.70220 1.25978 1.21497 1.21361 1.66977 1.09538 1.28353 1.29696 0.91077 0.91447 0.92127 0.92124 0.93950 0.90296 0.88054 0.80296 0.85586 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.91 71.98 0.71 -2.45 15 2 C -0.11 -3.53 5.92 30.60 0.18 -3.35 15 3 C -0.05 -1.77 5.64 29.85 0.17 -1.61 15 4 C 0.33 14.81 6.89 138.79 0.96 15.77 15 5 N -0.61 -26.60 10.32 -188.11 -1.94 -28.54 15 6 C 0.15 6.18 11.29 84.62 0.96 7.14 15 7 C -0.33 -15.30 9.95 22.94 0.23 -15.07 15 8 C 0.25 12.95 6.44 40.27 0.26 13.21 15 9 C -0.49 -27.22 9.63 23.54 0.23 -26.99 15 10 H 0.07 4.13 8.06 -2.91 -0.02 4.11 15 11 C 0.02 1.07 5.52 85.32 0.47 1.54 15 12 N -0.81 -44.46 13.64 21.85 0.30 -44.16 15 13 Si 1.18 57.72 25.48 68.60 1.75 59.47 15 14 H -0.33 -15.44 7.11 99.48 0.71 -14.73 15 15 H -0.29 -13.90 6.97 99.48 0.69 -13.21 15 16 H -0.29 -13.83 6.83 99.48 0.68 -13.15 15 17 N -0.62 -31.57 4.66 -181.39 -0.84 -32.41 15 18 H 0.07 1.37 8.14 -2.39 -0.02 1.35 15 19 H 0.07 1.33 8.14 -2.39 -0.02 1.31 15 20 H 0.06 1.30 8.14 -2.39 -0.02 1.28 15 21 H 0.06 1.90 8.14 -2.38 -0.02 1.88 15 22 H 0.04 1.51 8.05 -2.39 -0.02 1.49 15 23 H 0.08 2.76 8.14 -2.38 -0.02 2.74 15 24 H 0.10 3.09 8.14 -2.39 -0.02 3.07 15 25 H 0.18 5.61 8.06 -2.91 -0.02 5.58 15 26 H 0.13 5.32 8.06 -2.91 -0.02 5.29 15 27 H 0.29 14.97 8.72 -92.71 -0.81 14.16 15 Total: -1.00 -60.77 236.00 4.49 -56.28 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: 1.06 Total: 1.19 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 4.16 Total: -11.82 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -2.49 Total: -105.12 kcal Atomic # 14 Polarization: 57.72 SS G_CDS: 1.75 Total: 59.47 kcal Total: -60.77 4.49 -56.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953018069.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.950 kcal (2) G-P(sol) polarization free energy of solvation -60.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds