Wall clock time and date at job start Mon Mar 30 2020 02:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.35955 * 123.45032 * 251.68299 * 3 2 1 5 5 S 1.70449 * 110.83078 * 180.25861 * 4 3 2 6 6 C 1.75514 * 92.43817 * 359.72105 * 5 4 3 7 7 C 1.50702 * 124.71829 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47241 * 270.02694 * 7 6 5 9 9 H 1.08005 * 119.99480 * 359.97438 * 8 7 6 10 10 C 1.37870 * 120.00439 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99923 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00474 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46730 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47036 * 119.99802 * 12 10 8 15 15 H 1.48501 * 109.47081 * 240.00157 * 12 10 8 16 16 C 1.32825 * 110.55898 * 359.97438 * 6 5 4 17 17 H 1.08000 * 124.58289 * 359.97438 * 4 3 2 18 18 H 1.09003 * 109.47037 * 30.02122 * 7 6 5 19 19 H 1.08998 * 109.46937 * 150.02833 * 7 6 5 20 20 H 0.96993 * 120.00567 * 180.02562 * 11 10 8 21 21 H 1.08002 * 123.46002 * 179.97438 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3173 0.3575 1.0769 5 16 4.9806 0.2480 0.7211 6 6 4.6706 -0.3002 -0.9172 7 6 5.7383 -0.6309 -1.9281 8 6 6.0866 0.6069 -2.7140 9 1 5.5846 1.5396 -2.5029 10 6 7.0451 0.5484 -3.7033 11 7 7.6552 -0.5877 -3.9614 12 14 7.4763 2.0824 -4.6780 13 1 6.6536 3.2216 -4.1977 14 1 8.9152 2.3988 -4.4922 15 1 7.2032 1.8466 -6.1186 16 6 3.3642 -0.3830 -1.1420 17 1 2.9131 0.6724 2.0276 18 1 6.6266 -0.9955 -1.4122 19 1 5.3703 -1.4005 -2.6065 20 1 8.3299 -0.6289 -4.6570 21 1 2.9409 -0.6992 -2.0839 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535703758.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:27 Heat of formation + Delta-G solvation = 43.385353 kcal Electronic energy + Delta-G solvation = -8996.893865 eV Core-core repulsion = 7157.135439 eV Total energy + Delta-G solvation = -1839.758427 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 193.026 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.78901 -35.72192 -33.39514 -30.88962 -26.94504 -24.64483 -23.01343 -19.40567 -17.38067 -16.49088 -16.36345 -14.62105 -13.81684 -13.78367 -13.15433 -12.66317 -12.61734 -12.46070 -11.86842 -11.50165 -11.26748 -10.82907 -10.73234 -10.28846 -9.90781 -9.60758 -8.54070 -8.16352 -7.96022 -6.16376 -4.21485 1.15774 1.99315 2.39783 2.54970 2.96226 3.24108 3.32526 3.37120 3.78696 4.35314 4.40777 5.15887 5.19794 5.78733 5.96209 6.37413 6.63719 6.78736 7.32434 7.43383 7.73240 7.78843 8.12263 8.83038 9.43852 10.93387 Molecular weight = 193.03amu Principal moments of inertia in cm(-1) A = 0.050291 B = 0.009327 C = 0.008735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.628167 B = 3001.254503 C = 3204.660002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.288 3.712 3 C -0.052 4.052 4 C -0.228 4.228 5 S 0.190 5.810 6 C -0.116 4.116 7 C 0.075 3.925 8 C -0.518 4.518 9 H 0.062 0.938 10 C 0.061 3.939 11 N -0.892 5.892 12 Si 0.897 3.103 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.283 1.283 16 C -0.142 4.142 17 H 0.164 0.836 18 H 0.035 0.965 19 H 0.045 0.955 20 H 0.264 0.736 21 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 1.096 7.595 8.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.028 4.028 3 C -0.072 4.072 4 C -0.369 4.369 5 S 0.457 5.543 6 C -0.234 4.234 7 C 0.036 3.964 8 C -0.557 4.557 9 H 0.080 0.920 10 C -0.141 4.141 11 N -0.530 5.530 12 Si 0.724 3.276 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.209 1.209 16 C -0.169 4.169 17 H 0.182 0.818 18 H 0.054 0.946 19 H 0.063 0.937 20 H 0.073 0.927 21 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.284 1.294 8.306 9.024 hybrid contribution -0.683 0.570 -1.385 1.646 sum -3.967 1.864 6.921 8.192 Atomic orbital electron populations 1.81182 1.12026 1.10399 1.08537 1.25252 0.92043 0.92664 0.92805 1.16348 0.84992 1.10146 0.95751 1.25323 1.00276 1.08751 1.02532 1.83122 1.00491 1.62513 1.08196 1.25277 0.99049 1.01254 0.97794 1.18052 0.89954 0.97975 0.90376 1.21096 1.21517 0.95102 1.17983 0.92020 1.24997 0.95832 0.96355 0.96957 1.69946 1.25989 1.25023 1.32065 0.86445 0.78307 0.82991 0.79811 1.19539 1.20827 1.20860 1.20873 0.91722 1.06261 0.98071 0.81847 0.94636 0.93711 0.92662 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.80 18.54 41.84 0.78 -7.03 14 2 C 0.29 4.70 15.62 -22.47 -0.35 4.35 14 3 C -0.05 -0.83 5.84 -106.37 -0.62 -1.45 14 4 C -0.23 -3.19 10.78 29.91 0.32 -2.87 14 5 S 0.19 2.92 23.00 -107.50 -2.47 0.45 14 6 C -0.12 -2.23 5.63 -36.17 -0.20 -2.44 14 7 C 0.08 1.76 5.44 -29.03 -0.16 1.60 14 8 C -0.52 -13.50 9.09 -34.44 -0.31 -13.81 14 9 H 0.06 1.60 7.74 -52.48 -0.41 1.19 14 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 14 11 N -0.89 -24.96 13.29 55.43 0.74 -24.22 14 12 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 14 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 14 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 14 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 14 16 C -0.14 -2.52 10.20 -39.02 -0.40 -2.92 14 17 H 0.16 1.80 8.06 -52.49 -0.42 1.37 14 18 H 0.04 0.86 8.14 -51.93 -0.42 0.44 14 19 H 0.04 1.10 8.14 -51.93 -0.42 0.68 14 20 H 0.26 6.97 8.31 -40.82 -0.34 6.63 14 21 H 0.15 2.54 8.06 -52.49 -0.42 2.12 14 LS Contribution 222.19 15.07 3.35 3.35 Total: -1.00 -27.57 222.19 -5.68 -33.26 By element: Atomic # 1 Polarization: -4.12 SS G_CDS: -1.23 Total: -5.35 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.82 Total: -16.00 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 1.51 Total: -31.25 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.47 Total: 0.45 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -27.57 -5.68 -33.26 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535703758.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.641 kcal (2) G-P(sol) polarization free energy of solvation -27.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds