Wall clock time and date at job start Mon Mar 30 2020 02:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.35955 * 123.45032 * 251.68299 * 3 2 1 5 5 S 1.70449 * 110.83078 * 180.25861 * 4 3 2 6 6 C 1.75514 * 92.43817 * 359.72105 * 5 4 3 7 7 C 1.50702 * 124.71829 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47241 * 270.02694 * 7 6 5 9 9 H 1.08005 * 119.99480 * 359.97438 * 8 7 6 10 10 C 1.37870 * 120.00439 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99923 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00474 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46730 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47036 * 119.99802 * 12 10 8 15 15 H 1.48501 * 109.47081 * 240.00157 * 12 10 8 16 16 C 1.32825 * 110.55898 * 359.97438 * 6 5 4 17 17 H 1.08000 * 124.58289 * 359.97438 * 4 3 2 18 18 H 1.09003 * 109.47037 * 30.02122 * 7 6 5 19 19 H 1.08998 * 109.46937 * 150.02833 * 7 6 5 20 20 H 0.96993 * 120.00567 * 180.02562 * 11 10 8 21 21 H 1.08002 * 123.46002 * 179.97438 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3173 0.3575 1.0769 5 16 4.9806 0.2480 0.7211 6 6 4.6706 -0.3002 -0.9172 7 6 5.7383 -0.6309 -1.9281 8 6 6.0866 0.6069 -2.7140 9 1 5.5846 1.5396 -2.5029 10 6 7.0451 0.5484 -3.7033 11 7 7.6552 -0.5877 -3.9614 12 14 7.4763 2.0824 -4.6780 13 1 6.6536 3.2216 -4.1977 14 1 8.9152 2.3988 -4.4922 15 1 7.2032 1.8466 -6.1186 16 6 3.3642 -0.3830 -1.1420 17 1 2.9131 0.6724 2.0276 18 1 6.6266 -0.9955 -1.4122 19 1 5.3703 -1.4005 -2.6065 20 1 8.3299 -0.6289 -4.6570 21 1 2.9409 -0.6992 -2.0839 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535703758.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:27 Heat of formation + Delta-G solvation = 28.294861 kcal Electronic energy + Delta-G solvation = -8997.548238 eV Core-core repulsion = 7157.135439 eV Total energy + Delta-G solvation = -1840.412799 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 193.026 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.12742 -37.09630 -35.27468 -32.56961 -28.63320 -26.03336 -24.79472 -20.84863 -18.76112 -18.41522 -17.72148 -16.48898 -15.21691 -15.13170 -14.45983 -14.42859 -14.17446 -13.97866 -13.33515 -13.01646 -12.96200 -12.50846 -12.44915 -11.84480 -11.60772 -11.50243 -10.57688 -9.58964 -9.23679 -8.18673 -6.30770 -0.08315 0.70717 1.07122 1.13969 1.43311 1.46042 1.57484 1.66857 2.42816 2.50927 3.11666 3.15061 3.99241 4.44533 4.63048 4.92580 5.16016 5.31567 5.38821 5.66361 5.76616 6.15407 6.46079 6.81381 7.38354 8.90851 Molecular weight = 193.03amu Principal moments of inertia in cm(-1) A = 0.050291 B = 0.009327 C = 0.008735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.628167 B = 3001.254503 C = 3204.660002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.306 3.694 3 C -0.070 4.070 4 C -0.192 4.192 5 S 0.240 5.760 6 C -0.165 4.165 7 C 0.084 3.916 8 C -0.529 4.529 9 H 0.061 0.939 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.960 3.040 13 H -0.264 1.264 14 H -0.277 1.277 15 H -0.281 1.281 16 C -0.131 4.131 17 H 0.205 0.795 18 H 0.017 0.983 19 H 0.018 0.982 20 H 0.265 0.735 21 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.402 2.402 8.965 9.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.010 4.010 3 C -0.089 4.089 4 C -0.333 4.333 5 S 0.506 5.494 6 C -0.282 4.282 7 C 0.045 3.955 8 C -0.567 4.567 9 H 0.079 0.921 10 C -0.190 4.190 11 N -0.568 5.568 12 Si 0.785 3.215 13 H -0.188 1.188 14 H -0.202 1.202 15 H -0.207 1.207 16 C -0.160 4.160 17 H 0.222 0.778 18 H 0.035 0.965 19 H 0.036 0.964 20 H 0.074 0.926 21 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.711 2.602 9.680 10.689 hybrid contribution -0.562 0.146 -1.722 1.817 sum -4.273 2.748 7.959 9.442 Atomic orbital electron populations 1.81208 1.12646 1.11517 1.09238 1.25148 0.91827 0.91859 0.92140 1.16131 0.84697 1.12340 0.95778 1.25807 0.99384 1.04889 1.03234 1.82951 1.00865 1.61056 1.04480 1.24834 0.98423 1.04945 1.00008 1.17681 0.90555 0.96397 0.90870 1.21458 1.21143 0.95964 1.18167 0.92107 1.25833 0.95939 0.99149 0.98118 1.70057 1.26785 1.27023 1.32912 0.85462 0.78204 0.79606 0.78213 1.18779 1.20236 1.20714 1.20919 0.91600 1.04814 0.98632 0.77768 0.96451 0.96373 0.92556 0.84113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -15.65 18.54 19.00 0.35 -15.29 14 2 C 0.31 9.31 15.62 88.33 1.38 10.69 14 3 C -0.07 -2.05 5.84 -20.99 -0.12 -2.17 14 4 C -0.19 -4.59 10.78 67.29 0.73 -3.87 14 5 S 0.24 6.74 23.00 -56.49 -1.30 5.44 14 6 C -0.17 -6.26 5.63 24.51 0.14 -6.12 14 7 C 0.08 4.03 5.44 29.10 0.16 4.19 14 8 C -0.53 -27.85 9.09 25.60 0.23 -27.62 14 9 H 0.06 3.14 7.74 -2.91 -0.02 3.11 14 10 C 0.01 0.45 5.46 84.65 0.46 0.91 14 11 N -0.93 -52.98 13.29 21.45 0.28 -52.70 14 12 Si 0.96 42.15 29.54 68.60 2.03 44.17 14 13 H -0.26 -11.15 7.11 99.48 0.71 -10.45 14 14 H -0.28 -11.82 7.11 99.48 0.71 -11.11 14 15 H -0.28 -12.20 7.11 99.48 0.71 -11.50 14 16 C -0.13 -4.56 10.20 22.66 0.23 -4.33 14 17 H 0.21 3.26 8.06 -2.91 -0.02 3.24 14 18 H 0.02 0.87 8.14 -2.39 -0.02 0.85 14 19 H 0.02 0.94 8.14 -2.39 -0.02 0.92 14 20 H 0.27 14.28 8.31 -92.71 -0.77 13.51 14 21 H 0.14 4.93 8.06 -2.91 -0.02 4.90 14 Total: -1.00 -59.04 222.19 5.81 -53.23 By element: Atomic # 1 Polarization: -7.77 SS G_CDS: 1.24 Total: -6.52 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: 3.21 Total: -28.33 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: 0.64 Total: -67.99 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 6.74 SS G_CDS: -1.30 Total: 5.44 kcal Total: -59.04 5.81 -53.23 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535703758.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.526 kcal (2) G-P(sol) polarization free energy of solvation -59.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds