Wall clock time and date at job start Mon Mar 30 2020 02:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35703 * 116.99888 * 2 1 4 4 C 1.39541 * 119.75890 * 359.97438 * 3 2 1 5 5 C 1.36284 * 120.51560 * 180.02562 * 4 3 2 6 6 C 1.40800 * 120.00871 * 359.97438 * 5 4 3 7 7 C 1.40935 * 120.24417 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00389 * 154.44005 * 7 6 5 9 9 C 1.39861 * 119.99929 * 334.44094 * 7 6 5 10 10 N 1.30950 * 119.99639 * 334.53176 * 9 7 6 11 11 Si 1.86798 * 120.00191 * 154.53426 * 9 7 6 12 12 H 1.48498 * 109.47190 * 179.97438 * 11 9 7 13 13 H 1.48505 * 109.46977 * 299.99733 * 11 9 7 14 14 H 1.48499 * 109.47329 * 59.99861 * 11 9 7 15 15 C 1.41645 * 119.51641 * 0.25362 * 6 5 4 16 16 N 1.38798 * 120.25084 * 179.74761 * 15 6 5 17 17 C 1.38452 * 119.49525 * 359.53268 * 15 6 5 18 18 H 1.09003 * 109.46859 * 59.99830 * 1 2 3 19 19 H 1.08999 * 109.47325 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.47009 * 300.00290 * 1 2 3 21 21 H 1.08001 * 119.74249 * 0.02562 * 4 3 2 22 22 H 1.08001 * 119.99449 * 179.97438 * 5 4 3 23 23 H 0.96991 * 120.00123 * 354.14838 * 10 9 7 24 24 H 0.97004 * 120.00625 * 359.97438 * 16 15 6 25 25 H 0.97011 * 120.00044 * 179.97438 * 16 15 6 26 26 H 1.07995 * 120.01666 * 180.18139 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2801 2.3762 -0.0005 5 6 1.8827 3.5986 -0.0011 6 6 3.2877 3.6911 -0.0005 7 6 3.9160 4.9526 -0.0016 8 1 4.9119 5.0603 0.4022 9 6 3.2500 6.0651 -0.5257 10 7 2.3181 5.9036 -1.4314 11 14 3.6897 7.7814 0.0661 12 1 2.8464 8.7796 -0.6394 13 1 3.4513 7.8768 1.5288 14 1 5.1213 8.0524 -0.2208 15 6 4.0650 2.5070 -0.0049 16 7 5.4510 2.5804 -0.0097 17 6 3.4317 1.2758 0.0002 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 0.2021 2.3103 -0.0005 22 1 1.2825 4.4964 -0.0019 23 1 2.1481 5.0230 -1.8007 24 1 5.8910 3.4449 -0.0105 25 1 5.9799 1.7671 -0.0123 26 1 4.0161 0.3676 -0.0001 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016678116.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:24 Heat of formation + Delta-G solvation = -27.010176 kcal Electronic energy + Delta-G solvation = -11737.517755 eV Core-core repulsion = 9587.786972 eV Total energy + Delta-G solvation = -2149.730782 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.80158 -36.87557 -33.71913 -32.62616 -29.19250 -27.77062 -26.39273 -24.40545 -21.15574 -20.32143 -17.72707 -17.02181 -16.09248 -14.81961 -14.58440 -14.32193 -14.10808 -13.73807 -12.68866 -12.24340 -12.03562 -11.68532 -11.33077 -11.08940 -10.90019 -10.50711 -10.34026 -9.67588 -9.48594 -9.09943 -8.77669 -7.19401 -7.08995 -6.50449 -4.06641 2.83505 2.97205 3.21856 3.32165 3.42180 4.13192 4.27195 4.68473 5.19252 5.55897 5.68001 5.73595 5.91029 6.18719 6.27574 6.69628 6.88228 7.12399 7.34529 7.58791 7.75313 7.86122 8.05468 8.20762 8.52078 8.61112 8.85111 9.04350 9.08034 10.25343 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.050403 B = 0.011462 C = 0.009684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.390068 B = 2442.227339 C = 2890.822277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.334 6.334 3 C 0.033 3.967 4 C -0.204 4.204 5 C -0.166 4.166 6 C 0.032 3.968 7 C -0.533 4.533 8 H 0.068 0.932 9 C 0.039 3.961 10 N -0.814 5.814 11 Si 1.063 2.937 12 H -0.277 1.277 13 H -0.278 1.278 14 H -0.280 1.280 15 C 0.148 3.852 16 N -0.878 5.878 17 C -0.197 4.197 18 H 0.043 0.957 19 H 0.081 0.919 20 H 0.043 0.957 21 H 0.094 0.906 22 H 0.109 0.891 23 H 0.296 0.704 24 H 0.395 0.605 25 H 0.379 0.621 26 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 -3.513 1.877 3.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.249 6.249 3 C -0.011 4.011 4 C -0.224 4.224 5 C -0.187 4.187 6 C 0.027 3.973 7 C -0.563 4.563 8 H 0.086 0.914 9 C -0.181 4.181 10 N -0.439 5.439 11 Si 0.887 3.113 12 H -0.201 1.201 13 H -0.203 1.203 14 H -0.205 1.205 15 C 0.045 3.955 16 N -0.419 5.419 17 C -0.221 4.221 18 H 0.062 0.938 19 H 0.100 0.900 20 H 0.062 0.938 21 H 0.112 0.888 22 H 0.127 0.873 23 H 0.109 0.891 24 H 0.224 0.776 25 H 0.205 0.795 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.222 -2.079 1.684 2.684 hybrid contribution 0.471 -1.529 0.125 1.605 sum 0.249 -3.608 1.809 4.044 Atomic orbital electron populations 1.22711 0.80787 1.01636 1.00556 1.85806 1.19348 1.28774 1.90991 1.18210 0.91226 0.82779 1.08842 1.20332 0.97408 0.92820 1.11857 1.20442 0.94189 0.95684 1.08432 1.17278 0.91415 0.91463 0.97113 1.19977 1.03851 0.93439 1.39034 0.91432 1.26772 0.92897 1.05373 0.93023 1.70487 1.26040 1.29690 1.17707 0.83677 0.76684 0.73938 0.76972 1.20144 1.20333 1.20532 1.17557 0.83782 0.92606 1.01553 1.41883 1.03460 1.09217 1.87357 1.19177 0.91278 0.95312 1.16375 0.93795 0.90045 0.93835 0.88754 0.87326 0.89060 0.77636 0.79523 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.80 101.05 0.99 1.63 15 2 O -0.33 -7.09 10.48 -18.81 -0.20 -7.28 15 3 C 0.03 0.79 6.70 -38.88 -0.26 0.53 15 4 C -0.20 -4.90 8.95 -39.80 -0.36 -5.26 15 5 C -0.17 -4.37 7.88 -39.32 -0.31 -4.68 15 6 C 0.03 0.86 5.31 -106.61 -0.57 0.29 15 7 C -0.53 -14.07 8.42 -37.95 -0.32 -14.39 15 8 H 0.07 1.70 6.76 -52.49 -0.35 1.35 15 9 C 0.04 1.00 4.93 -17.32 -0.09 0.91 15 10 N -0.81 -22.14 12.32 55.54 0.68 -21.46 15 11 Si 1.06 22.01 30.00 -169.99 -5.10 16.91 15 12 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 13 H -0.28 -5.60 7.11 56.52 0.40 -5.19 15 14 H -0.28 -5.47 7.11 56.52 0.40 -5.07 15 15 C 0.15 3.59 6.78 -83.33 -0.57 3.02 15 16 N -0.88 -17.76 8.98 32.70 0.29 -17.47 15 17 C -0.20 -4.66 9.81 -39.29 -0.39 -5.05 15 18 H 0.04 0.69 7.64 -51.93 -0.40 0.30 15 19 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 20 H 0.04 0.68 7.64 -51.93 -0.40 0.28 15 21 H 0.09 2.03 6.25 -52.49 -0.33 1.70 15 22 H 0.11 2.94 6.49 -52.49 -0.34 2.60 15 23 H 0.30 8.31 6.70 -40.82 -0.27 8.04 15 24 H 0.39 7.80 7.06 -40.82 -0.29 7.52 15 25 H 0.38 6.42 8.84 -40.82 -0.36 6.06 15 26 H 0.10 2.12 8.06 -52.49 -0.42 1.69 15 LS Contribution 225.25 15.07 3.39 3.39 Total: -1.00 -29.16 225.25 -5.16 -34.33 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -2.38 Total: 14.56 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -1.86 Total: -22.98 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.98 Total: -38.93 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.20 Total: -7.28 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.10 Total: 16.91 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -29.16 -5.16 -34.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016678116.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.315 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds