Wall clock time and date at job start Mon Mar 30 2020 01:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00146 * 2 1 4 4 H 1.48503 * 109.46990 * 270.00439 * 3 2 1 5 5 H 1.48504 * 109.47003 * 29.99848 * 3 2 1 6 6 H 1.48492 * 109.46967 * 149.99870 * 3 2 1 7 7 C 1.37880 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99544 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00162 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.46845 * 180.02562 * 9 7 2 11 11 C 1.39671 * 119.99828 * 180.02562 * 10 9 7 12 12 C 1.38978 * 120.04799 * 359.97124 * 11 10 9 13 13 C 1.38107 * 120.03702 * 180.02562 * 12 11 10 14 14 C 1.38213 * 120.12574 * 359.74472 * 13 12 11 15 15 C 1.38767 * 120.09519 * 0.51415 * 14 13 12 16 16 O 1.35905 * 120.02062 * 179.76940 * 15 14 13 17 17 C 1.38619 * 119.96399 * 359.48442 * 15 14 13 18 18 H 0.97001 * 119.99930 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47211 * 60.00596 * 9 7 2 20 20 H 1.09001 * 109.47681 * 300.00635 * 9 7 2 21 21 H 0.96994 * 120.00231 * 359.97438 * 10 9 7 22 22 H 1.08005 * 119.98093 * 0.02562 * 12 11 10 23 23 H 1.07997 * 119.93807 * 180.02562 * 13 12 11 24 24 H 1.08005 * 119.95276 * 180.27371 * 14 13 12 25 25 H 0.96705 * 113.99576 * 269.71966 * 16 15 14 26 26 H 1.07994 * 120.06347 * 180.23140 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7375 -4.9295 -0.0011 12 6 0.3713 -5.1846 -0.0010 13 6 -0.0888 -6.4868 -0.0010 14 6 0.8072 -7.5391 -0.0064 15 6 2.1724 -7.2906 -0.0011 16 8 3.0521 -8.3265 -0.0016 17 6 2.6385 -5.9851 -0.0011 18 1 -0.4850 0.8401 -0.0004 19 1 0.6240 -2.5567 -0.8904 20 1 0.6245 -2.5571 0.8896 21 1 3.1567 -3.4355 -0.0009 22 1 -0.3310 -4.3640 -0.0010 23 1 -1.1508 -6.6832 -0.0014 24 1 0.4443 -8.5564 -0.0109 25 1 3.3071 -8.6265 0.8817 26 1 3.7007 -5.7899 -0.0007 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032016279.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:41 Heat of formation + Delta-G solvation = -26.556226 kcal Electronic energy + Delta-G solvation = -11227.433096 eV Core-core repulsion = 9077.721998 eV Total energy + Delta-G solvation = -2149.711098 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.24707 -36.86604 -34.51157 -32.59056 -29.87004 -28.60105 -26.30386 -23.06307 -21.98896 -20.77041 -17.91229 -16.98030 -15.84056 -15.44037 -15.10554 -14.54075 -14.08504 -13.20958 -13.18332 -13.08197 -12.14716 -11.67483 -11.63083 -11.06421 -10.95244 -10.85419 -10.31682 -10.12063 -9.45546 -9.42719 -8.59130 -8.25307 -6.63867 -6.24134 -4.29569 1.78426 2.10501 3.20995 3.27371 3.30084 4.15091 4.24966 4.43945 4.75619 5.13203 5.38089 5.63097 5.83505 6.01790 6.21775 6.31274 6.84328 6.91213 7.00697 7.06195 7.24212 7.38201 7.59292 7.89211 7.98522 8.23467 8.61640 8.85706 9.36961 10.86493 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.080860 B = 0.007324 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.192802 B = 3822.285571 C = 4150.799272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.250 3.750 10 N -0.727 5.727 11 C 0.247 3.753 12 C -0.209 4.209 13 C -0.057 4.057 14 C -0.229 4.229 15 C 0.144 3.856 16 O -0.506 6.506 17 C -0.243 4.243 18 H 0.266 0.734 19 H 0.022 0.978 20 H 0.022 0.978 21 H 0.392 0.608 22 H 0.127 0.873 23 H 0.118 0.882 24 H 0.114 0.886 25 H 0.384 0.616 26 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 -10.177 1.649 10.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.349 5.349 11 C 0.136 3.864 12 C -0.233 4.233 13 C -0.076 4.076 14 C -0.250 4.250 15 C 0.100 3.900 16 O -0.316 6.316 17 C -0.268 4.268 18 H 0.076 0.924 19 H 0.040 0.960 20 H 0.040 0.960 21 H 0.225 0.775 22 H 0.145 0.855 23 H 0.136 0.864 24 H 0.132 0.868 25 H 0.239 0.761 26 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.968 -9.767 1.039 10.017 hybrid contribution 0.818 0.962 0.481 1.352 sum 2.786 -8.805 1.520 9.359 Atomic orbital electron populations 1.69943 1.06091 1.27405 1.49205 1.24931 0.94947 0.99477 0.94594 0.86397 0.79660 0.82505 0.78286 1.20416 1.20946 1.19744 1.21195 0.93379 0.90404 1.52894 0.91961 1.19146 0.88672 0.82605 0.96727 1.45562 1.09688 1.02397 1.77221 1.17865 0.92548 0.85458 0.90505 1.20805 0.94081 0.97317 1.11050 1.20683 0.98754 0.91843 0.96278 1.20899 0.92290 0.99002 1.12834 1.18093 0.87990 0.85787 0.98168 1.84771 1.63464 1.50202 1.33118 1.20702 0.99102 0.91408 1.15539 0.92415 0.96028 0.96026 0.77481 0.85515 0.86373 0.86768 0.76068 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 13.29 55.43 0.74 -24.67 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 15 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 7 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 15 8 H 0.06 1.62 7.60 -52.48 -0.40 1.22 15 9 C 0.25 6.32 4.66 -5.19 -0.02 6.30 15 10 N -0.73 -15.57 5.72 -59.82 -0.34 -15.91 15 11 C 0.25 4.86 6.65 -83.81 -0.56 4.30 15 12 C -0.21 -3.98 9.31 -39.36 -0.37 -4.35 15 13 C -0.06 -0.92 10.03 -39.64 -0.40 -1.31 15 14 C -0.23 -3.59 9.98 -39.39 -0.39 -3.98 15 15 C 0.14 2.35 6.70 -39.25 -0.26 2.09 15 16 O -0.51 -7.07 13.50 -19.44 -0.26 -7.33 15 17 C -0.24 -4.29 9.83 -39.24 -0.39 -4.67 15 18 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 19 H 0.02 0.59 7.95 -51.93 -0.41 0.18 15 20 H 0.02 0.59 7.95 -51.93 -0.41 0.17 15 21 H 0.39 7.81 8.33 -40.82 -0.34 7.47 15 22 H 0.13 2.53 6.73 -52.48 -0.35 2.18 15 23 H 0.12 1.59 8.06 -52.49 -0.42 1.16 15 24 H 0.11 1.54 8.06 -52.48 -0.42 1.12 15 25 H 0.38 3.37 9.06 45.56 0.41 3.78 15 26 H 0.12 1.92 8.06 -52.49 -0.42 1.50 15 LS Contribution 235.38 15.07 3.55 3.55 Total: -1.00 -29.58 235.38 -6.05 -35.63 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -1.91 Total: 7.87 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -2.80 Total: -14.90 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.39 Total: -40.58 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.26 Total: -7.33 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.58 -6.05 -35.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032016279.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.077 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds