Wall clock time and date at job start Mon Mar 30 2020 01:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00146 * 2 1 4 4 H 1.48503 * 109.46990 * 270.00439 * 3 2 1 5 5 H 1.48504 * 109.47003 * 29.99848 * 3 2 1 6 6 H 1.48492 * 109.46967 * 149.99870 * 3 2 1 7 7 C 1.37880 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99544 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00162 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.46845 * 180.02562 * 9 7 2 11 11 C 1.39671 * 119.99828 * 180.02562 * 10 9 7 12 12 C 1.38978 * 120.04799 * 359.97124 * 11 10 9 13 13 C 1.38107 * 120.03702 * 180.02562 * 12 11 10 14 14 C 1.38213 * 120.12574 * 359.74472 * 13 12 11 15 15 C 1.38767 * 120.09519 * 0.51415 * 14 13 12 16 16 O 1.35905 * 120.02062 * 179.76940 * 15 14 13 17 17 C 1.38619 * 119.96399 * 359.48442 * 15 14 13 18 18 H 0.97001 * 119.99930 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47211 * 60.00596 * 9 7 2 20 20 H 1.09001 * 109.47681 * 300.00635 * 9 7 2 21 21 H 0.96994 * 120.00231 * 359.97438 * 10 9 7 22 22 H 1.08005 * 119.98093 * 0.02562 * 12 11 10 23 23 H 1.07997 * 119.93807 * 180.02562 * 13 12 11 24 24 H 1.08005 * 119.95276 * 180.27371 * 14 13 12 25 25 H 0.96705 * 113.99576 * 269.71966 * 16 15 14 26 26 H 1.07994 * 120.06347 * 180.23140 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7375 -4.9295 -0.0011 12 6 0.3713 -5.1846 -0.0010 13 6 -0.0888 -6.4868 -0.0010 14 6 0.8072 -7.5391 -0.0064 15 6 2.1724 -7.2906 -0.0011 16 8 3.0521 -8.3265 -0.0016 17 6 2.6385 -5.9851 -0.0011 18 1 -0.4850 0.8401 -0.0004 19 1 0.6240 -2.5567 -0.8904 20 1 0.6245 -2.5571 0.8896 21 1 3.1567 -3.4355 -0.0009 22 1 -0.3310 -4.3640 -0.0010 23 1 -1.1508 -6.6832 -0.0014 24 1 0.4443 -8.5564 -0.0109 25 1 3.3071 -8.6265 0.8817 26 1 3.7007 -5.7899 -0.0007 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032016279.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:41 Heat of formation + Delta-G solvation = -47.885732 kcal Electronic energy + Delta-G solvation = -11228.358013 eV Core-core repulsion = 9077.721998 eV Total energy + Delta-G solvation = -2150.636014 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.59044 -38.20894 -36.14587 -34.50619 -31.37584 -30.11055 -28.11655 -24.89143 -23.41208 -22.24756 -19.37458 -18.70294 -17.23676 -17.16034 -16.63702 -16.14696 -15.47251 -14.98242 -14.85218 -14.41385 -14.08758 -13.25796 -12.94912 -12.86768 -12.72932 -12.45004 -12.05031 -11.52510 -11.36490 -11.07257 -10.56970 -9.60289 -8.32316 -8.22450 -6.46314 0.44385 0.73531 1.40514 1.41755 1.52987 2.32731 2.78677 2.91089 3.03240 3.48456 4.08460 4.37199 4.43000 4.67775 4.77583 4.97103 5.12744 5.27449 5.43524 5.51043 5.59631 5.67573 5.83753 5.96387 6.44476 6.71176 6.94624 7.11306 7.27281 8.79525 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.080860 B = 0.007324 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.192802 B = 3822.285571 C = 4150.799272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.978 3.022 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.560 4.560 8 H 0.070 0.930 9 C 0.271 3.729 10 N -0.734 5.734 11 C 0.221 3.779 12 C -0.234 4.234 13 C -0.051 4.051 14 C -0.219 4.219 15 C 0.151 3.849 16 O -0.507 6.507 17 C -0.246 4.246 18 H 0.270 0.730 19 H -0.008 1.008 20 H -0.006 1.006 21 H 0.397 0.603 22 H 0.103 0.897 23 H 0.147 0.853 24 H 0.146 0.854 25 H 0.410 0.590 26 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.302 -11.380 1.771 11.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.802 3.198 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.598 4.598 8 H 0.088 0.912 9 C 0.148 3.852 10 N -0.359 5.359 11 C 0.114 3.886 12 C -0.258 4.258 13 C -0.070 4.070 14 C -0.239 4.239 15 C 0.106 3.894 16 O -0.321 6.321 17 C -0.269 4.269 18 H 0.079 0.921 19 H 0.010 0.990 20 H 0.012 0.988 21 H 0.231 0.769 22 H 0.121 0.879 23 H 0.165 0.835 24 H 0.164 0.836 25 H 0.270 0.730 26 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.960 -11.037 1.179 11.488 hybrid contribution 0.501 1.117 0.454 1.305 sum 3.460 -9.920 1.633 10.633 Atomic orbital electron populations 1.70073 1.07817 1.28549 1.49977 1.25916 0.95826 1.03387 0.93876 0.85250 0.78469 0.77536 0.78550 1.19713 1.20473 1.18658 1.21585 0.93974 0.91298 1.52912 0.91168 1.18596 0.88692 0.83876 0.94006 1.45200 1.09119 1.02353 1.79270 1.18096 0.93319 0.85105 0.92109 1.20850 0.93723 0.98233 1.12962 1.20985 1.00586 0.90602 0.94806 1.21273 0.91887 1.00209 1.10558 1.18164 0.88725 0.85746 0.96784 1.84713 1.62887 1.49033 1.35417 1.20850 0.99362 0.91566 1.15169 0.92143 0.99003 0.98809 0.76857 0.87869 0.83504 0.83644 0.73031 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.27 13.29 21.45 0.28 -53.98 15 2 C 0.01 0.55 5.46 84.66 0.46 1.01 15 3 Si 0.98 42.66 29.54 68.60 2.03 44.69 15 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 5 H -0.28 -11.89 7.11 99.48 0.71 -11.19 15 6 H -0.26 -10.92 7.11 99.48 0.71 -10.22 15 7 C -0.56 -30.90 9.28 25.60 0.24 -30.67 15 8 H 0.07 3.66 7.60 -2.91 -0.02 3.64 15 9 C 0.27 14.44 4.66 85.63 0.40 14.84 15 10 N -0.73 -32.51 5.72 -343.17 -1.96 -34.48 15 11 C 0.22 8.82 6.65 38.20 0.25 9.07 15 12 C -0.23 -9.10 9.31 22.42 0.21 -8.89 15 13 C -0.05 -1.57 10.03 22.23 0.22 -1.35 15 14 C -0.22 -6.11 9.98 22.39 0.22 -5.89 15 15 C 0.15 4.48 6.70 22.49 0.15 4.63 15 16 O -0.51 -12.24 13.50 -92.48 -1.25 -13.49 15 17 C -0.25 -8.34 9.83 22.49 0.22 -8.12 15 18 H 0.27 14.76 8.31 -92.71 -0.77 13.99 15 19 H -0.01 -0.45 7.95 -2.39 -0.02 -0.47 15 20 H -0.01 -0.34 7.95 -2.39 -0.02 -0.36 15 21 H 0.40 16.19 8.33 -92.71 -0.77 15.42 15 22 H 0.10 4.42 6.73 -2.91 -0.02 4.40 15 23 H 0.15 3.58 8.06 -2.91 -0.02 3.56 15 24 H 0.15 3.20 8.06 -2.91 -0.02 3.18 15 25 H 0.41 5.48 9.06 -74.05 -0.67 4.81 15 26 H 0.13 4.01 8.06 -2.91 -0.02 3.98 15 Total: -1.00 -63.92 235.38 1.23 -62.68 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -0.24 Total: 19.94 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 2.38 Total: -25.36 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -1.68 Total: -88.46 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -1.25 Total: -13.49 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -63.92 1.23 -62.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032016279.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.798 kcal (2) G-P(sol) polarization free energy of solvation -63.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds