Wall clock time and date at job start Mon Mar 30 2020 01:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00057 * 2 1 4 4 H 1.48506 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47225 * 300.00007 * 3 2 1 6 6 H 1.48504 * 109.47124 * 60.00023 * 3 2 1 7 7 C 1.37875 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99821 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00534 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47609 * 179.97438 * 9 7 2 11 11 O 1.42894 * 109.47573 * 179.97438 * 10 9 7 12 12 C 1.35910 * 117.00621 * 180.02562 * 11 10 9 13 13 C 1.39138 * 120.47706 * 180.24394 * 12 11 10 14 14 C 1.38535 * 118.37336 * 180.24194 * 13 12 11 15 15 C 1.38262 * 119.22035 * 359.47237 * 14 13 12 16 16 N 1.31844 * 120.88422 * 0.30388 * 15 14 13 17 17 C 1.31834 * 121.78446 * 359.97438 * 16 15 14 18 18 H 0.96996 * 119.99804 * 0.02562 * 1 2 3 19 19 H 1.08999 * 109.47473 * 59.98844 * 9 7 2 20 20 H 1.09006 * 109.46756 * 299.99988 * 9 7 2 21 21 H 1.09002 * 109.46851 * 59.99561 * 10 9 7 22 22 H 1.08998 * 109.47422 * 300.00223 * 10 9 7 23 23 H 1.07999 * 120.81005 * 0.02562 * 13 12 11 24 24 H 1.08002 * 120.39207 * 179.75678 * 14 13 12 25 25 H 1.08000 * 119.55595 * 180.28266 * 15 14 13 26 26 H 1.07997 * 119.66066 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5307 -4.8997 0.0011 12 6 2.2709 -6.0395 0.0018 13 6 1.6494 -7.2844 -0.0027 14 6 2.4460 -8.4179 0.0032 15 6 3.8213 -8.2763 0.0023 16 7 4.3787 -7.0815 0.0018 17 6 3.6566 -5.9784 0.0017 18 1 -0.4850 0.8400 -0.0004 19 1 0.6246 -2.5571 -0.8895 20 1 0.6240 -2.5567 0.8904 21 1 2.8719 -3.6043 0.8905 22 1 2.8719 -3.6045 -0.8894 23 1 0.5725 -7.3651 -0.0072 24 1 1.9979 -9.4006 0.0040 25 1 4.4474 -9.1563 0.0023 26 1 4.1491 -5.0173 0.0017 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034130591.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:58 Heat of formation + Delta-G solvation = -16.497599 kcal Electronic energy + Delta-G solvation = -11176.579412 eV Core-core repulsion = 9027.304489 eV Total energy + Delta-G solvation = -2149.274923 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.28123 -37.75393 -33.48171 -32.22336 -30.66573 -29.46414 -25.29798 -23.50521 -22.70612 -20.86670 -18.00721 -16.61714 -16.28687 -16.00677 -15.53666 -14.57511 -14.23770 -13.51879 -13.28868 -12.82709 -12.38519 -12.06004 -11.90504 -11.10176 -10.98591 -10.67043 -10.08924 -9.76989 -9.54259 -9.38442 -9.22439 -8.49140 -8.15489 -6.13974 -4.18846 1.25100 1.46687 3.25025 3.32146 3.35778 3.64988 3.95395 4.37762 4.66775 4.89979 4.97212 5.17248 5.22784 5.55534 5.65169 5.91717 5.93822 6.18023 6.21177 6.55684 6.69274 7.40728 7.57496 7.70541 7.92076 8.08997 8.18684 8.86879 9.45975 10.97607 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.089390 B = 0.006732 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.159035 B = 4158.380950 C = 4451.093664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.060 3.940 11 O -0.309 6.309 12 C 0.097 3.903 13 C -0.122 4.122 14 C -0.134 4.134 15 C 0.041 3.959 16 N -0.452 5.452 17 C 0.010 3.990 18 H 0.263 0.737 19 H 0.028 0.972 20 H 0.029 0.971 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.140 0.860 24 H 0.136 0.864 25 H 0.152 0.848 26 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.175 -12.635 -0.003 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.013 4.013 11 O -0.221 6.221 12 C 0.047 3.953 13 C -0.149 4.149 14 C -0.154 4.154 15 C -0.117 4.117 16 N -0.161 5.161 17 C -0.148 4.148 18 H 0.073 0.927 19 H 0.047 0.953 20 H 0.047 0.953 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.158 0.842 24 H 0.154 0.846 25 H 0.169 0.831 26 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.701 -12.382 -0.003 13.244 hybrid contribution -0.351 0.929 0.000 0.993 sum 4.350 -11.453 -0.002 12.251 Atomic orbital electron populations 1.69985 1.06123 1.26936 1.49696 1.24995 0.94919 0.99454 0.94834 0.86416 0.80012 0.83146 0.77735 1.19576 1.20816 1.20819 1.21005 0.93149 0.90111 1.52276 0.92192 1.19135 0.94135 0.88929 0.98966 1.23438 0.97317 0.80588 0.99990 1.86198 1.36259 1.13033 1.86604 1.20271 0.91724 0.88517 0.94759 1.20977 1.01225 0.89717 1.02973 1.21942 0.94868 0.98775 0.99816 1.22539 0.92767 0.95155 1.01244 1.67490 1.40663 0.98472 1.09521 1.23045 0.90089 0.98130 1.03529 0.92719 0.95322 0.95311 0.92777 0.92770 0.84234 0.84591 0.83062 0.82221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 15 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.53 -14.53 9.11 -34.44 -0.31 -14.84 15 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 15 9 C 0.03 0.66 5.34 -27.89 -0.15 0.51 15 10 C 0.06 1.26 4.69 37.15 0.17 1.44 15 11 O -0.31 -6.18 10.15 -19.46 -0.20 -6.37 15 12 C 0.10 1.66 6.71 -39.07 -0.26 1.39 15 13 C -0.12 -1.74 10.13 -39.14 -0.40 -2.14 15 14 C -0.13 -1.58 10.11 -39.46 -0.40 -1.98 15 15 C 0.04 0.52 11.18 -17.54 -0.20 0.32 15 16 N -0.45 -7.15 10.35 -13.13 -0.14 -7.28 15 17 C 0.01 0.17 10.22 -17.38 -0.18 -0.01 15 18 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 19 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 20 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.05 1.07 7.68 -51.93 -0.40 0.67 15 22 H 0.05 1.07 7.68 -51.93 -0.40 0.67 15 23 H 0.14 1.75 8.06 -52.49 -0.42 1.33 15 24 H 0.14 1.11 8.06 -52.49 -0.42 0.68 15 25 H 0.15 1.43 8.06 -52.49 -0.42 1.01 15 26 H 0.16 2.55 6.32 -52.49 -0.33 2.22 15 LS Contribution 235.78 15.07 3.55 3.55 Total: -1.00 -30.25 235.78 -5.67 -35.92 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -2.78 Total: -2.72 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -1.82 Total: -13.70 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.60 Total: -32.77 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.20 Total: -6.37 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.25 -5.67 -35.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034130591.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.421 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds