Wall clock time and date at job start Mon Mar 30 2020 02:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36343 * 125.63847 * 2 1 4 4 C 1.34851 * 108.22295 * 180.02562 * 3 2 1 5 5 C 1.40892 * 107.41480 * 0.02562 * 4 3 2 6 6 C 1.34858 * 107.41686 * 359.73710 * 5 4 3 7 7 C 1.50694 * 125.88994 * 180.25251 * 6 5 4 8 8 C 1.50704 * 109.47336 * 85.20137 * 7 6 5 9 9 O 1.21437 * 119.99302 * 359.97438 * 8 7 6 10 10 C 1.41020 * 120.00461 * 179.97438 * 8 7 6 11 11 H 1.08006 * 119.99604 * 0.02562 * 10 8 7 12 12 C 1.40457 * 120.00322 * 179.97438 * 10 8 7 13 13 N 1.30524 * 120.00025 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00008 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47121 * 60.00433 * 14 12 10 16 16 H 1.48507 * 109.46933 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47305 * 300.00365 * 14 12 10 18 18 H 1.09002 * 109.47391 * 90.02039 * 1 2 3 19 19 H 1.09001 * 109.46813 * 330.02096 * 1 2 3 20 20 H 1.09004 * 109.47041 * 210.02223 * 1 2 3 21 21 H 1.08001 * 125.88585 * 359.97438 * 3 2 1 22 22 H 1.07993 * 126.29100 * 180.02562 * 4 3 2 23 23 H 1.08001 * 126.29295 * 179.97438 * 5 4 3 24 24 H 1.08998 * 109.47369 * 205.19705 * 7 6 5 25 25 H 1.09005 * 109.47355 * 325.20048 * 7 6 5 26 26 H 0.97000 * 119.99880 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7045 -0.0006 5 6 3.5461 -0.7045 -0.0015 6 6 2.2594 -1.1081 0.0044 7 6 1.7819 -2.5374 0.0111 8 6 1.7404 -3.0466 1.4289 9 8 2.0673 -2.3194 2.3449 10 6 1.3219 -4.3673 1.6919 11 1 1.0315 -5.0141 0.8771 12 6 1.2838 -4.8420 3.0133 13 7 1.6352 -4.0606 3.9979 14 14 0.7287 -6.5913 3.3616 15 1 1.6288 -7.5444 2.6639 16 1 0.7785 -6.8445 4.8241 17 1 -0.6616 -6.7760 2.8738 18 1 -0.3634 -0.0004 -1.0277 19 1 -0.3633 0.8902 0.5135 20 1 -0.3633 -0.8898 0.5142 21 1 1.9172 2.1324 -0.0004 22 1 4.4165 1.3437 -0.0003 23 1 4.4166 -1.3437 -0.0026 24 1 0.7833 -2.5889 -0.4227 25 1 2.4651 -3.1515 -0.5757 26 1 1.6092 -4.3885 4.9104 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034518943.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:41 Heat of formation + Delta-G solvation = 3.206250 kcal Electronic energy + Delta-G solvation = -11705.421172 eV Core-core repulsion = 9557.000673 eV Total energy + Delta-G solvation = -2148.420500 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.44271 -36.57910 -32.65141 -32.17750 -30.61994 -27.27236 -25.75905 -24.98878 -20.06290 -19.80664 -18.18814 -16.24950 -16.08175 -15.20490 -14.52124 -13.76723 -13.38554 -12.94413 -12.55760 -12.40143 -11.93991 -11.64600 -11.42373 -11.37335 -11.17179 -10.89045 -10.32529 -10.24830 -10.18816 -8.88593 -7.87177 -7.46768 -7.09344 -6.17882 -4.87031 3.00885 3.07922 3.14407 3.16673 3.66742 3.82628 4.05559 4.28084 5.27081 5.45562 5.55341 5.60306 5.85129 5.87252 6.21381 6.30928 6.52977 6.61406 6.73138 7.02587 7.11223 7.28074 7.82542 8.01000 8.08924 8.12647 8.86058 8.92789 10.39190 10.62976 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.067274 B = 0.009595 C = 0.009314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.107250 B = 2917.453316 C = 3005.478209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.448 5.448 3 C -0.040 4.040 4 C -0.200 4.200 5 C -0.208 4.208 6 C 0.073 3.927 7 C -0.102 4.102 8 C 0.366 3.634 9 O -0.530 6.530 10 C -0.540 4.540 11 H 0.068 0.932 12 C 0.083 3.917 13 N -0.742 5.742 14 Si 0.905 3.095 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.266 1.266 18 H 0.063 0.937 19 H 0.075 0.925 20 H 0.085 0.915 21 H 0.151 0.849 22 H 0.125 0.875 23 H 0.126 0.874 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 3.678 -6.492 7.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.124 5.124 3 C -0.169 4.169 4 C -0.225 4.225 5 C -0.231 4.231 6 C -0.039 4.039 7 C -0.141 4.141 8 C 0.258 3.742 9 O -0.417 6.417 10 C -0.572 4.572 11 H 0.086 0.914 12 C -0.139 4.139 13 N -0.370 5.370 14 Si 0.729 3.271 15 H -0.190 1.190 16 H -0.204 1.204 17 H -0.191 1.191 18 H 0.082 0.918 19 H 0.094 0.906 20 H 0.104 0.896 21 H 0.168 0.832 22 H 0.143 0.857 23 H 0.144 0.856 24 H 0.085 0.915 25 H 0.103 0.897 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.682 4.122 -5.884 7.668 hybrid contribution -0.338 -0.884 0.107 0.953 sum -3.020 3.238 -5.776 7.278 Atomic orbital electron populations 1.21879 0.78429 1.04290 1.01980 1.43791 1.05588 1.05934 1.57105 1.21490 0.90722 0.90815 1.13862 1.20696 0.95414 0.95162 1.11217 1.20469 0.95338 0.94576 1.12752 1.20266 0.90139 0.88455 1.05016 1.20908 1.00379 0.89112 1.03721 1.19416 0.79891 0.88573 0.86271 1.90442 1.46621 1.58849 1.45799 1.20739 1.43899 0.99554 0.93009 0.91373 1.25993 0.93121 0.98722 0.96106 1.69956 1.31430 1.35627 1.00034 0.86474 0.80026 0.82799 0.77815 1.18967 1.20395 1.19073 0.91839 0.90644 0.89647 0.83189 0.85666 0.85642 0.91535 0.89726 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.71 59.85 0.64 1.84 15 2 N -0.45 -8.90 3.15 -119.90 -0.38 -9.28 15 3 C -0.04 -0.75 11.43 -16.75 -0.19 -0.94 15 4 C -0.20 -3.90 10.86 -39.78 -0.43 -4.33 15 5 C -0.21 -4.58 10.77 -39.78 -0.43 -5.01 15 6 C 0.07 1.65 5.38 -81.79 -0.44 1.21 15 7 C -0.10 -2.32 5.66 -29.04 -0.16 -2.49 15 8 C 0.37 10.33 6.90 -33.25 -0.23 10.10 15 9 O -0.53 -17.11 14.56 5.42 0.08 -17.03 15 10 C -0.54 -15.01 9.22 -37.69 -0.35 -15.36 15 11 H 0.07 1.73 7.85 -52.48 -0.41 1.31 15 12 C 0.08 2.28 5.50 -17.27 -0.10 2.18 15 13 N -0.74 -21.79 11.72 55.57 0.65 -21.14 15 14 Si 0.90 19.53 29.56 -169.99 -5.03 14.50 15 15 H -0.27 -5.58 7.11 56.52 0.40 -5.18 15 16 H -0.28 -5.87 7.11 56.52 0.40 -5.47 15 17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 18 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 19 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 20 H 0.08 1.47 7.51 -51.93 -0.39 1.08 15 21 H 0.15 2.18 8.06 -52.49 -0.42 1.75 15 22 H 0.13 2.08 8.06 -52.49 -0.42 1.66 15 23 H 0.13 2.66 8.06 -52.49 -0.42 2.24 15 24 H 0.07 1.36 7.46 -51.93 -0.39 0.97 15 25 H 0.08 1.78 8.14 -51.93 -0.42 1.35 15 26 H 0.27 7.23 8.29 -40.82 -0.34 6.89 15 LS Contribution 236.45 15.07 3.56 3.56 Total: -1.00 -34.10 236.45 -5.66 -39.75 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -2.86 Total: 2.42 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -1.69 Total: -12.79 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.27 Total: -30.41 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.08 Total: -17.03 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -34.10 -5.66 -39.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034518943.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.959 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds