Wall clock time and date at job start Mon Mar 30 2020 01:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38174 * 119.95978 * 2 1 4 4 C 1.38153 * 120.13939 * 180.27810 * 3 2 1 5 5 C 1.39003 * 120.06467 * 359.44829 * 4 3 2 6 6 N 1.39671 * 120.04525 * 180.29755 * 5 4 3 7 7 C 1.38756 * 119.91821 * 0.27413 * 5 4 3 8 8 C 1.38764 * 119.85802 * 0.02562 * 7 5 4 9 9 O 1.35752 * 120.02784 * 180.02562 * 8 7 5 10 10 C 1.34831 * 117.00183 * 354.40027 * 9 8 7 11 11 H 1.08001 * 119.99880 * 5.06260 * 10 9 8 12 12 C 1.38651 * 119.99785 * 185.06478 * 10 9 8 13 13 N 1.31557 * 119.99584 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99928 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47164 * 90.00337 * 14 12 10 16 16 H 1.48500 * 109.46992 * 210.00058 * 14 12 10 17 17 H 1.48505 * 109.47258 * 329.99786 * 14 12 10 18 18 H 1.09007 * 109.46761 * 270.27485 * 1 2 3 19 19 H 1.08998 * 109.46996 * 30.27367 * 1 2 3 20 20 H 1.09003 * 109.47355 * 150.27658 * 1 2 3 21 21 H 1.07997 * 119.93235 * 359.97438 * 3 2 1 22 22 H 1.08001 * 119.96936 * 179.72192 * 4 3 2 23 23 H 0.97000 * 119.99494 * 0.02562 * 6 5 4 24 24 H 0.96988 * 120.00495 * 179.97438 * 6 5 4 25 25 H 1.07995 * 120.06765 * 179.97438 * 7 5 4 26 26 H 0.97003 * 119.99450 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1971 0.0000 4 6 3.5785 1.2014 -0.0058 5 6 4.2787 0.0006 -0.0001 6 7 5.6754 0.0055 0.0003 7 6 3.5884 -1.2030 0.0057 8 6 2.2007 -1.2035 0.0053 9 8 1.5219 -2.3791 0.0114 10 6 2.2511 -3.5077 -0.0994 11 1 3.3298 -3.4552 -0.1054 12 6 1.6162 -4.7357 -0.2057 13 7 2.3278 -5.8369 -0.3143 14 14 -0.2496 -4.8265 -0.1946 15 1 -0.7585 -4.7224 -1.5858 16 1 -0.6787 -6.1206 0.3939 17 1 -0.7948 -3.7086 0.6169 18 1 -0.3633 0.0049 1.0277 19 1 -0.3633 0.8875 -0.5181 20 1 -0.3634 -0.8925 -0.5095 21 1 1.6553 2.1314 -0.0004 22 1 4.1151 2.1387 -0.0103 23 1 6.1574 0.8473 -0.0030 24 1 6.1633 -0.8326 0.0047 25 1 4.1299 -2.1373 0.0098 26 1 1.8835 -6.6959 -0.3890 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035678239.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:14 Heat of formation + Delta-G solvation = -31.228552 kcal Electronic energy + Delta-G solvation = -11673.910073 eV Core-core repulsion = 9523.996368 eV Total energy + Delta-G solvation = -2149.913705 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.92398 -38.55845 -35.61968 -34.34010 -31.51101 -30.75121 -27.55469 -26.19680 -23.26593 -22.11745 -19.88500 -18.92470 -17.56490 -16.67881 -16.13452 -15.82121 -15.74957 -15.40851 -14.50930 -14.07353 -14.00889 -13.89296 -13.32663 -12.93267 -12.74129 -12.49859 -12.01533 -11.99531 -11.36455 -11.07567 -10.70996 -9.20178 -8.48367 -8.22076 -6.19714 0.73757 0.87638 1.31698 1.36611 1.53200 2.29678 2.82510 3.06503 3.17896 3.25810 4.17123 4.36945 4.44974 4.64560 4.91389 4.96658 4.99041 5.04893 5.36353 5.50311 5.53379 5.72947 5.87486 5.97516 6.24455 6.67493 6.87129 7.11071 7.64730 8.63623 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.042465 B = 0.012675 C = 0.009818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.201143 B = 2208.602487 C = 2851.109609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.222 4.222 3 C -0.030 4.030 4 C -0.257 4.257 5 C 0.243 3.757 6 N -0.868 5.868 7 C -0.318 4.318 8 C 0.158 3.842 9 O -0.238 6.238 10 C -0.396 4.396 11 H 0.077 0.923 12 C 0.009 3.991 13 N -0.926 5.926 14 Si 0.968 3.032 15 H -0.266 1.266 16 H -0.268 1.268 17 H -0.260 1.260 18 H 0.059 0.941 19 H 0.086 0.914 20 H 0.037 0.963 21 H 0.157 0.843 22 H 0.146 0.854 23 H 0.409 0.591 24 H 0.399 0.601 25 H 0.103 0.897 26 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.283 13.068 0.467 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.225 4.225 3 C -0.048 4.048 4 C -0.280 4.280 5 C 0.138 3.862 6 N -0.408 5.408 7 C -0.342 4.342 8 C 0.108 3.892 9 O -0.145 6.145 10 C -0.472 4.472 11 H 0.094 0.906 12 C -0.189 4.189 13 N -0.567 5.567 14 Si 0.790 3.210 15 H -0.191 1.191 16 H -0.193 1.193 17 H -0.184 1.184 18 H 0.077 0.923 19 H 0.105 0.895 20 H 0.056 0.944 21 H 0.175 0.825 22 H 0.164 0.836 23 H 0.240 0.760 24 H 0.227 0.773 25 H 0.121 0.879 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.019 12.806 0.469 12.814 hybrid contribution 0.338 -0.940 -0.025 1.000 sum 0.357 11.865 0.444 11.879 Atomic orbital electron populations 1.20399 0.90492 1.01923 1.01529 1.19285 0.96971 0.90259 1.15996 1.20804 0.93499 0.96407 0.94103 1.20616 0.94444 0.95980 1.16912 1.17631 0.84927 0.92772 0.90909 1.42358 1.02197 1.11449 1.84805 1.20625 0.94175 0.97572 1.21862 1.19258 0.90730 0.86172 0.93070 1.83520 1.36022 1.12150 1.82784 1.20700 0.91887 0.83022 1.51620 0.90564 1.25274 1.04926 0.93133 0.95579 1.69737 1.38233 0.98632 1.50145 0.85250 0.78026 0.78213 0.79470 1.19056 1.19270 1.18402 0.92258 0.89483 0.94421 0.82506 0.83620 0.76029 0.77329 0.87920 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.00 9.79 71.24 0.70 -2.30 15 2 C -0.22 -8.84 5.90 -19.72 -0.12 -8.96 15 3 C -0.03 -0.94 9.69 22.23 0.22 -0.72 15 4 C -0.26 -7.93 9.89 22.43 0.22 -7.70 15 5 C 0.24 8.76 6.75 38.20 0.26 9.02 15 6 N -0.87 -23.49 9.09 -51.41 -0.47 -23.96 15 7 C -0.32 -14.70 9.01 22.52 0.20 -14.50 15 8 C 0.16 7.72 6.62 22.56 0.15 7.87 15 9 O -0.24 -13.27 7.63 -22.77 -0.17 -13.45 15 10 C -0.40 -23.99 9.95 67.92 0.68 -23.31 15 11 H 0.08 4.88 5.43 -2.91 -0.02 4.86 15 12 C 0.01 0.51 5.49 84.83 0.47 0.98 15 13 N -0.93 -56.43 13.96 21.61 0.30 -56.13 15 14 Si 0.97 46.32 28.62 68.60 1.96 48.29 15 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 17 H -0.26 -12.36 7.11 99.48 0.71 -11.65 15 18 H 0.06 1.93 8.14 -2.38 -0.02 1.91 15 19 H 0.09 2.31 8.09 -2.39 -0.02 2.29 15 20 H 0.04 1.46 7.53 -2.39 -0.02 1.44 15 21 H 0.16 3.58 8.06 -2.91 -0.02 3.56 15 22 H 0.15 3.36 8.06 -2.91 -0.02 3.33 15 23 H 0.41 8.06 8.84 -92.71 -0.82 7.24 15 24 H 0.40 10.47 8.84 -92.72 -0.82 9.65 15 25 H 0.10 5.23 5.64 -2.91 -0.02 5.21 15 26 H 0.28 15.84 8.31 -92.71 -0.77 15.07 15 Total: -1.00 -68.70 230.63 3.97 -64.73 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -0.42 Total: 20.14 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 2.77 Total: -39.63 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -0.17 Total: -80.08 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.17 Total: -13.45 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.96 Total: 48.29 kcal Total: -68.70 3.97 -64.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035678239.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.503 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds