Wall clock time and date at job start Mon Mar 30 2020 01:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38193 * 119.96902 * 2 1 4 4 C 1.38134 * 120.14292 * 179.77053 * 3 2 1 5 5 C 1.38953 * 120.07698 * 0.50467 * 4 3 2 6 6 O 1.35748 * 120.02715 * 179.72910 * 5 4 3 7 7 C 1.34834 * 116.99758 * 174.48579 * 6 5 4 8 8 H 1.08001 * 120.00490 * 5.05654 * 7 6 5 9 9 C 1.38656 * 119.99993 * 185.05628 * 7 6 5 10 10 N 1.31562 * 119.99751 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00102 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47246 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47282 * 119.99749 * 11 9 7 14 14 H 1.48505 * 109.47260 * 240.00117 * 11 9 7 15 15 C 1.38722 * 119.94024 * 359.74677 * 5 4 3 16 16 C 1.38792 * 119.85678 * 0.02562 * 15 5 4 17 17 N 1.39668 * 120.03724 * 179.97438 * 16 15 5 18 18 H 1.09003 * 109.47292 * 269.72888 * 1 2 3 19 19 H 1.09003 * 109.47439 * 149.72629 * 1 2 3 20 20 H 1.08998 * 109.47572 * 29.72384 * 1 2 3 21 21 H 1.08003 * 119.92738 * 359.97438 * 3 2 1 22 22 H 1.08002 * 119.95847 * 180.23520 * 4 3 2 23 23 H 0.96999 * 119.99812 * 180.02562 * 10 9 7 24 24 H 1.07998 * 120.07025 * 180.02562 * 15 5 4 25 25 H 0.97001 * 119.99458 * 180.02562 * 17 16 15 26 26 H 0.97001 * 120.00088 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1972 0.0000 4 6 3.5786 1.2014 0.0048 5 6 4.2786 0.0011 -0.0010 6 8 5.6361 0.0064 -0.0018 7 6 6.2530 -1.1875 0.1079 8 1 5.6716 -2.0977 0.1091 9 6 7.6338 -1.2468 0.2193 10 7 8.3420 -0.1381 0.2174 11 14 8.4883 -2.9008 0.3721 12 1 7.4746 -3.9857 0.3495 13 1 9.4295 -3.0784 -0.7627 14 1 9.2402 -2.9532 1.6517 15 6 3.5891 -1.2026 -0.0062 16 6 2.2011 -1.2038 -0.0063 17 7 1.5031 -2.4135 -0.0121 18 1 -0.3634 -0.0049 1.0277 19 1 -0.3634 -0.8875 -0.5181 20 1 -0.3634 0.8924 -0.5095 21 1 1.6555 2.1315 -0.0004 22 1 4.1151 2.1387 0.0086 23 1 9.3080 -0.1796 0.2949 24 1 4.1310 -2.1367 -0.0103 25 1 0.5330 -2.4136 -0.0125 26 1 1.9882 -3.2534 -0.0157 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039136082.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:21 Heat of formation + Delta-G solvation = -32.701520 kcal Electronic energy + Delta-G solvation = -11535.797404 eV Core-core repulsion = 9385.819826 eV Total energy + Delta-G solvation = -2149.977577 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.80364 -38.73810 -35.13493 -34.17985 -32.40858 -29.73699 -27.82757 -26.30557 -23.33228 -21.90743 -20.00280 -18.85863 -17.57576 -16.63841 -16.19913 -15.74078 -15.53388 -15.36544 -14.42813 -14.35036 -14.11949 -13.60728 -12.94819 -12.91561 -12.59661 -12.27040 -12.15039 -12.04163 -11.29170 -11.24564 -10.65159 -9.05293 -8.45240 -8.24041 -6.13136 0.74542 0.90776 1.34668 1.44222 1.53391 2.18990 2.87871 3.09589 3.24473 3.60802 4.14634 4.31889 4.49592 4.66589 4.87433 4.97096 5.01944 5.07720 5.20220 5.41771 5.49262 5.78278 5.83623 6.07625 6.17073 6.68968 6.99832 7.11956 7.83726 8.78814 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.058300 B = 0.009843 C = 0.008467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.161784 B = 2843.863109 C = 3306.264461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.242 4.242 3 C -0.029 4.029 4 C -0.259 4.259 5 C 0.147 3.853 6 O -0.233 6.233 7 C -0.411 4.411 8 H 0.099 0.901 9 C -0.025 4.025 10 N -0.923 5.923 11 Si 1.021 2.979 12 H -0.252 1.252 13 H -0.268 1.268 14 H -0.268 1.268 15 C -0.319 4.319 16 C 0.254 3.746 17 N -0.864 5.864 18 H 0.066 0.934 19 H 0.066 0.934 20 H 0.073 0.927 21 H 0.150 0.850 22 H 0.106 0.894 23 H 0.272 0.728 24 H 0.115 0.885 25 H 0.408 0.592 26 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.403 -4.575 -0.072 14.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.247 4.247 3 C -0.047 4.047 4 C -0.280 4.280 5 C 0.096 3.904 6 O -0.140 6.140 7 C -0.488 4.488 8 H 0.117 0.883 9 C -0.222 4.222 10 N -0.561 5.561 11 Si 0.840 3.160 12 H -0.175 1.175 13 H -0.193 1.193 14 H -0.193 1.193 15 C -0.343 4.343 16 C 0.148 3.852 17 N -0.406 5.406 18 H 0.085 0.915 19 H 0.085 0.915 20 H 0.092 0.908 21 H 0.168 0.832 22 H 0.125 0.875 23 H 0.081 0.919 24 H 0.132 0.868 25 H 0.240 0.760 26 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -13.047 -4.301 -0.080 13.738 hybrid contribution 0.838 -0.755 0.045 1.129 sum -12.209 -5.056 -0.035 13.215 Atomic orbital electron populations 1.20440 0.88715 1.02894 1.02041 1.19475 0.97355 0.90882 1.17013 1.20734 0.91404 0.98310 0.94275 1.20254 0.95001 0.94984 1.17808 1.19650 0.83695 0.94865 0.92192 1.83945 1.15111 1.33486 1.81452 1.21847 0.90889 0.83684 1.52335 0.88346 1.26616 0.95845 1.03779 0.95985 1.70203 1.07206 1.29669 1.49050 0.84504 0.78082 0.74865 0.78540 1.17541 1.19278 1.19318 1.20545 0.93671 0.97596 1.22493 1.17380 0.89493 0.87628 0.90723 1.42396 1.09214 1.04277 1.84684 0.91529 0.91525 0.90760 0.83225 0.87549 0.91887 0.86755 0.76037 0.77068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 9.57 71.23 0.68 -1.16 15 2 C -0.24 -7.94 5.90 -19.70 -0.12 -8.05 15 3 C -0.03 -1.02 9.68 22.23 0.22 -0.81 15 4 C -0.26 -11.83 9.99 22.42 0.22 -11.61 15 5 C 0.15 7.77 6.64 22.56 0.15 7.92 15 6 O -0.23 -14.70 9.76 -22.76 -0.22 -14.92 15 7 C -0.41 -24.81 9.49 67.92 0.64 -24.17 15 8 H 0.10 5.49 5.20 -2.91 -0.02 5.47 15 9 C -0.03 -1.48 5.49 84.83 0.47 -1.01 15 10 N -0.92 -58.04 13.67 21.61 0.30 -57.74 15 11 Si 1.02 43.83 29.55 68.60 2.03 45.86 15 12 H -0.25 -9.97 7.11 99.48 0.71 -9.26 15 13 H -0.27 -10.99 7.11 99.48 0.71 -10.28 15 14 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 15 C -0.32 -14.69 9.01 22.52 0.20 -14.49 15 16 C 0.25 9.20 6.73 38.20 0.26 9.45 15 17 N -0.86 -22.42 8.99 -51.41 -0.46 -22.88 15 18 H 0.07 1.31 8.14 -2.39 -0.02 1.29 15 19 H 0.07 1.22 6.54 -2.39 -0.02 1.20 15 20 H 0.07 1.40 8.08 -2.39 -0.02 1.38 15 21 H 0.15 4.10 8.06 -2.91 -0.02 4.08 15 22 H 0.11 4.83 8.06 -2.91 -0.02 4.81 15 23 H 0.27 15.58 8.31 -92.71 -0.77 14.81 15 24 H 0.11 5.36 5.63 -2.91 -0.02 5.34 15 25 H 0.41 7.90 6.82 -92.71 -0.63 7.27 15 26 H 0.40 9.48 8.84 -92.71 -0.82 8.66 15 Total: -1.00 -73.28 229.48 4.13 -69.15 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -0.23 Total: 24.46 kcal Atomic # 6 Polarization: -46.64 SS G_CDS: 2.72 Total: -43.92 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -0.17 Total: -80.63 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.22 Total: -14.92 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -73.28 4.13 -69.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039136082.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.444 kcal (2) G-P(sol) polarization free energy of solvation -73.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds