Wall clock time and date at job start Mon Mar 30 2020 01:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00207 * 2 1 4 4 H 1.48495 * 109.47536 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47113 * 300.00192 * 3 2 1 6 6 H 1.48507 * 109.47092 * 60.00064 * 3 2 1 7 7 C 1.37883 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99775 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00066 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.47012 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99877 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46665 * 179.97438 * 11 10 9 13 13 C 1.38223 * 119.62264 * 0.02656 * 12 11 10 14 14 C 1.38628 * 119.16031 * 179.97438 * 13 12 11 15 15 C 1.38672 * 118.42475 * 359.97438 * 14 13 12 16 16 C 1.38186 * 119.15778 * 0.02562 * 15 14 13 17 17 N 1.31856 * 119.61279 * 180.02562 * 12 11 10 18 18 H 0.97004 * 119.99686 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.46796 * 59.99809 * 9 7 2 20 20 H 1.09002 * 109.46864 * 299.99984 * 9 7 2 21 21 H 1.09000 * 109.46932 * 60.00268 * 11 10 9 22 22 H 1.08993 * 109.47528 * 300.00136 * 11 10 9 23 23 H 1.07995 * 120.41821 * 359.95030 * 13 12 11 24 24 H 1.08006 * 120.78822 * 180.02562 * 14 13 12 25 25 H 1.07993 * 120.42192 * 179.97438 * 15 14 13 26 26 H 1.08001 * 119.60956 * 180.27218 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0017 11 6 1.5649 -4.8755 -0.0013 12 6 2.6317 -5.9400 -0.0032 13 6 3.9640 -5.5720 -0.0046 14 6 4.9374 -6.5592 -0.0059 15 6 4.5325 -7.8854 -0.0052 16 6 3.1817 -8.1770 -0.0039 17 7 2.2831 -7.2116 -0.0037 18 1 -0.4850 0.8401 -0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8897 21 1 0.9438 -4.9823 -0.8906 22 1 0.9458 -4.9827 0.8893 23 1 4.2432 -4.5288 -0.0050 24 1 5.9862 -6.3014 -0.0065 25 1 5.2634 -8.6804 -0.0066 26 1 2.8582 -9.2074 0.0011 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039322154.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:03 Heat of formation + Delta-G solvation = -18.200900 kcal Electronic energy + Delta-G solvation = -11178.518754 eV Core-core repulsion = 9029.169971 eV Total energy + Delta-G solvation = -2149.348783 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.94043 -36.72132 -32.89308 -32.35910 -31.40930 -27.65142 -25.78353 -23.34318 -22.24315 -21.62422 -16.98528 -16.32872 -16.12387 -15.10969 -15.10700 -14.93746 -14.16388 -13.65536 -13.47589 -12.93919 -12.30383 -11.65843 -11.45219 -10.93614 -10.89742 -10.84507 -10.13786 -9.70777 -9.25782 -9.12755 -9.06554 -8.63407 -8.22568 -6.14354 -4.16487 1.29936 1.46841 3.27450 3.33977 3.39773 3.98106 4.11138 4.41157 4.95190 5.03696 5.11959 5.22415 5.30881 5.59021 5.80815 5.99534 6.01091 6.08582 6.35209 6.42663 6.90837 7.05601 7.37736 7.74957 8.09139 8.16155 8.48345 8.95687 9.48313 10.97183 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.079863 B = 0.007015 C = 0.006479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.518294 B = 3990.555847 C = 4320.627789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.196 3.804 10 O -0.395 6.395 11 C 0.111 3.889 12 C 0.136 3.864 13 C -0.143 4.143 14 C -0.081 4.081 15 C -0.187 4.187 16 C 0.094 3.906 17 N -0.488 5.488 18 H 0.264 0.736 19 H 0.009 0.991 20 H 0.009 0.991 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.151 0.849 24 H 0.132 0.868 25 H 0.129 0.871 26 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.070 -12.053 -0.002 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.122 3.878 10 O -0.315 6.315 11 C 0.033 3.967 12 C -0.001 4.001 13 C -0.163 4.163 14 C -0.107 4.107 15 C -0.207 4.207 16 C -0.064 4.064 17 N -0.199 5.199 18 H 0.074 0.926 19 H 0.027 0.973 20 H 0.027 0.973 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.169 0.831 24 H 0.150 0.850 25 H 0.147 0.853 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.225 -12.092 -0.002 13.600 hybrid contribution 0.958 0.997 -0.002 1.382 sum 7.183 -11.096 -0.004 13.217 Atomic orbital electron populations 1.69975 1.06108 1.27151 1.50361 1.24956 0.94996 0.99476 0.95083 0.86265 0.79969 0.82514 0.77648 1.19479 1.20823 1.20817 1.21064 0.94098 0.89195 1.51046 0.91424 1.20266 0.88699 0.83062 0.95792 1.87770 1.35747 1.12537 1.95408 1.20767 0.91690 0.83271 1.01013 1.21189 0.93843 0.91106 0.93913 1.22124 0.93217 1.01973 0.98956 1.21639 1.00103 0.92795 0.96180 1.22062 0.97557 0.97305 1.03733 1.22610 0.89282 0.98265 0.96200 1.67274 1.39320 1.00364 1.12893 0.92626 0.97339 0.97332 0.91938 0.91927 0.83146 0.85031 0.85256 0.83032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.64 13.29 55.43 0.74 -25.91 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 15 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.52 -14.96 9.43 -34.44 -0.32 -15.29 15 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 15 9 C 0.20 5.31 5.69 36.01 0.20 5.51 15 10 O -0.39 -9.39 8.78 -35.23 -0.31 -9.70 15 11 C 0.11 2.19 6.48 36.01 0.23 2.43 15 12 C 0.14 2.46 6.78 -82.59 -0.56 1.90 15 13 C -0.14 -2.37 9.41 -39.44 -0.37 -2.74 15 14 C -0.08 -1.06 10.18 -39.28 -0.40 -1.46 15 15 C -0.19 -2.19 10.11 -39.44 -0.40 -2.59 15 16 C 0.09 1.23 11.18 -17.55 -0.20 1.04 15 17 N -0.49 -8.15 10.27 -9.47 -0.10 -8.25 15 18 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 19 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 15 20 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 15 21 H 0.06 1.21 8.14 -51.93 -0.42 0.78 15 22 H 0.06 1.21 8.14 -51.93 -0.42 0.78 15 23 H 0.15 2.65 7.00 -52.49 -0.37 2.28 15 24 H 0.13 1.34 8.06 -52.48 -0.42 0.92 15 25 H 0.13 1.08 8.06 -52.49 -0.42 0.66 15 26 H 0.15 1.47 8.06 -52.49 -0.42 1.05 15 LS Contribution 237.79 15.07 3.58 3.58 Total: -1.00 -31.15 237.79 -5.89 -37.04 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: -2.87 Total: -3.65 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -1.91 Total: -9.70 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.64 Total: -34.16 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.31 Total: -9.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.15 -5.89 -37.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039322154.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.834 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds