Wall clock time and date at job start Mon Mar 30 2020 01:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 O 1.42907 * 109.46675 * 294.99903 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.38668 * 120.41818 * 265.00097 * 13 10 9 15 15 C 1.38632 * 118.42071 * 180.02562 * 14 13 10 16 16 C 1.38218 * 119.16183 * 359.97438 * 15 14 13 17 17 N 1.31854 * 120.76550 * 0.02562 * 16 15 14 18 18 C 1.31889 * 121.72347 * 359.70085 * 17 16 15 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 0.96700 * 114.00238 * 299.99679 * 12 10 9 23 23 H 1.08001 * 120.79011 * 359.97438 * 14 13 10 24 24 H 1.07998 * 120.41837 * 180.02562 * 15 14 13 25 25 H 1.08001 * 119.62197 * 179.97438 * 16 15 14 26 26 H 1.08003 * 119.61579 * 180.30822 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9292 -3.5590 0.8318 12 8 2.9875 -3.6487 -1.2315 13 6 1.4957 -4.9642 0.1075 14 6 1.3155 -5.5608 1.3463 15 6 0.6201 -6.7586 1.4068 16 6 0.1325 -7.3141 0.2389 17 7 0.3228 -6.7186 -0.9220 18 6 0.9748 -5.5760 -1.0167 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 2.4415 -3.7366 -2.0247 23 1 1.7082 -5.1037 2.2425 24 1 0.4607 -7.2510 2.3547 25 1 -0.4099 -8.2473 0.2774 26 1 1.1066 -5.1154 -1.9846 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041167752.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:55 Heat of formation + Delta-G solvation = -28.128635 kcal Electronic energy + Delta-G solvation = -11507.067011 eV Core-core repulsion = 9357.287728 eV Total energy + Delta-G solvation = -2149.779282 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.95878 -36.69461 -32.94822 -32.34574 -31.10437 -28.95098 -25.11680 -23.27098 -22.52169 -20.60495 -17.36085 -16.47154 -16.11065 -15.54254 -14.77505 -14.21421 -13.74927 -13.64412 -13.17756 -12.78263 -12.29920 -11.88075 -11.17406 -10.91735 -10.78999 -10.58842 -10.21917 -9.62527 -9.36540 -9.20485 -8.95412 -8.44560 -8.43304 -6.05577 -4.07953 1.39082 1.55860 3.30932 3.37069 3.41158 4.08099 4.42792 4.66800 5.04637 5.10095 5.21003 5.30533 5.34660 5.44044 5.76545 5.92990 6.19605 6.33140 6.55033 6.66309 6.95131 7.43460 7.54070 7.91158 8.20330 8.27822 8.38677 8.98549 9.56276 11.05645 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.066294 B = 0.008610 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.259837 B = 3251.433773 C = 3346.510093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.002 3.998 10 C 0.148 3.852 11 H 0.098 0.902 12 O -0.554 6.554 13 C -0.143 4.143 14 C -0.073 4.073 15 C -0.173 4.173 16 C 0.078 3.922 17 N -0.486 5.486 18 C 0.100 3.900 19 H 0.261 0.739 20 H 0.026 0.974 21 H 0.022 0.978 22 H 0.366 0.634 23 H 0.134 0.866 24 H 0.130 0.870 25 H 0.150 0.850 26 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.270 -10.368 1.670 10.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.080 0.920 9 C -0.036 4.036 10 C 0.088 3.912 11 H 0.116 0.884 12 O -0.358 6.358 13 C -0.145 4.145 14 C -0.100 4.100 15 C -0.193 4.193 16 C -0.079 4.079 17 N -0.194 5.194 18 C -0.057 4.057 19 H 0.071 0.929 20 H 0.044 0.956 21 H 0.040 0.960 22 H 0.213 0.787 23 H 0.152 0.848 24 H 0.148 0.852 25 H 0.167 0.833 26 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.289 -10.575 1.328 10.736 hybrid contribution 0.094 1.277 0.521 1.382 sum 1.383 -9.298 1.849 9.581 Atomic orbital electron populations 1.69971 1.06106 1.26770 1.50786 1.25027 0.94846 0.99390 0.95250 0.86526 0.79785 0.83128 0.78174 1.20611 1.21312 1.19792 1.21137 0.93333 0.90201 1.50531 0.92004 1.19759 0.93885 0.91658 0.98255 1.21127 0.93546 0.89199 0.87281 0.88375 1.86539 1.37487 1.96374 1.15447 1.22086 0.99005 0.99000 0.94396 1.21463 0.96440 0.94259 0.97796 1.22068 1.00183 0.97144 0.99885 1.22629 0.97824 0.99402 0.88031 1.67627 1.13880 1.09627 1.28262 1.22456 0.93454 0.91182 0.98589 0.92932 0.95609 0.95997 0.78748 0.84822 0.85173 0.83308 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.87 15 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.27 -6.46 7.11 56.52 0.40 -6.05 15 7 C -0.51 -14.25 8.88 -34.44 -0.31 -14.56 15 8 H 0.06 1.71 7.74 -52.49 -0.41 1.30 15 9 C 0.00 0.04 4.64 -27.88 -0.13 -0.09 15 10 C 0.15 3.00 3.17 -27.89 -0.09 2.91 15 11 H 0.10 1.98 8.06 -51.93 -0.42 1.56 15 12 O -0.55 -11.03 12.90 -35.23 -0.45 -11.48 15 13 C -0.14 -2.53 5.02 -104.49 -0.52 -3.06 15 14 C -0.07 -1.15 9.84 -39.28 -0.39 -1.53 15 15 C -0.17 -2.33 10.11 -39.44 -0.40 -2.73 15 16 C 0.08 1.11 11.18 -17.55 -0.20 0.91 15 17 N -0.49 -8.11 10.36 -13.25 -0.14 -8.25 15 18 C 0.10 1.71 10.49 -17.55 -0.18 1.53 15 19 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 20 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.02 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.37 6.12 7.42 45.56 0.34 6.46 15 23 H 0.13 1.85 8.06 -52.49 -0.42 1.43 15 24 H 0.13 1.31 8.06 -52.49 -0.42 0.89 15 25 H 0.15 1.60 8.06 -52.49 -0.42 1.17 15 26 H 0.15 2.32 6.64 -52.48 -0.35 1.97 15 LS Contribution 234.83 15.07 3.54 3.54 Total: -1.00 -31.50 234.83 -5.73 -37.23 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -2.08 Total: 3.41 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -2.31 Total: -15.14 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.60 Total: -34.12 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.45 Total: -11.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.50 -5.73 -37.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041167752.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.104 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds