Wall clock time and date at job start Mon Mar 30 2020 02:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00210 * 2 1 4 4 H 1.48499 * 109.46684 * 269.99601 * 3 2 1 5 5 H 1.48496 * 109.47213 * 29.99328 * 3 2 1 6 6 H 1.48502 * 109.47140 * 149.99604 * 3 2 1 7 7 C 1.37881 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00097 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.46895 * 110.99625 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47056 * 179.97438 * 11 10 9 13 13 C 1.38602 * 120.79596 * 90.00315 * 12 11 10 14 14 N 1.32331 * 119.10423 * 179.97438 * 13 12 11 15 15 C 1.31794 * 120.81888 * 359.97438 * 14 13 12 16 16 N 1.31795 * 121.75372 * 0.02562 * 15 14 13 17 17 C 1.32334 * 120.81807 * 0.02562 * 16 15 14 18 18 H 0.97005 * 120.00071 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.46734 * 59.99499 * 9 7 2 20 20 H 1.09002 * 109.46804 * 299.99406 * 9 7 2 21 21 H 1.00897 * 110.99867 * 303.95519 * 10 9 7 22 22 H 1.08998 * 109.47030 * 60.00387 * 11 10 9 23 23 H 1.08997 * 109.47730 * 300.00600 * 11 10 9 24 24 H 1.07994 * 120.45169 * 359.95292 * 13 12 11 25 25 H 1.08003 * 119.12654 * 179.71869 * 15 14 13 26 26 H 1.07998 * 120.44737 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5052 -4.9070 0.0011 12 6 2.5146 -6.0260 0.0005 13 6 2.9908 -6.5528 1.1908 14 7 3.8764 -7.5353 1.1511 15 6 4.3045 -8.0124 -0.0004 16 7 3.8741 -7.5363 -1.1515 17 6 2.9891 -6.5531 -1.1902 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5570 -0.8896 20 1 0.6240 -2.5567 0.8904 21 1 2.8404 -3.5487 -0.7808 22 1 0.8800 -4.9817 -0.8886 23 1 0.8805 -4.9812 0.8912 24 1 2.6440 -6.1666 2.1378 25 1 5.0311 -8.8115 -0.0009 26 1 2.6408 -6.1672 -2.1368 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054767174.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:30 Heat of formation + Delta-G solvation = 41.943980 kcal Electronic energy + Delta-G solvation = -11137.117794 eV Core-core repulsion = 9022.669839 eV Total energy + Delta-G solvation = -2114.447955 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.86078 -35.83806 -33.58239 -33.03123 -31.43769 -27.38890 -24.99226 -24.45773 -22.19237 -21.38827 -17.55686 -17.43835 -16.58494 -15.02478 -14.80012 -14.39409 -13.97593 -13.58347 -13.42172 -13.25146 -12.43616 -11.65353 -11.43233 -10.94698 -10.80026 -10.71438 -10.56046 -10.05658 -9.39742 -9.20359 -9.13632 -8.54962 -7.47411 -6.09880 -4.12342 0.99932 1.16828 3.28410 3.34787 3.39416 3.86576 4.21478 4.31263 4.38534 4.75088 4.92832 5.01110 5.26384 5.41829 5.52819 5.78767 6.01453 6.16780 6.48640 7.02335 7.09776 7.29289 7.68576 8.02135 8.13721 8.22416 8.46475 8.96186 9.53021 11.01097 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.076258 B = 0.006644 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.087265 B = 4213.272946 C = 4291.061984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.685 5.685 11 C 0.101 3.899 12 C -0.169 4.169 13 C 0.163 3.837 14 N -0.523 5.523 15 C 0.277 3.723 16 N -0.523 5.523 17 C 0.146 3.854 18 H 0.262 0.738 19 H -0.011 1.011 20 H 0.031 0.969 21 H 0.330 0.670 22 H 0.036 0.964 23 H 0.080 0.920 24 H 0.169 0.831 25 H 0.191 0.809 26 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 -11.597 -0.737 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.315 5.315 11 C -0.030 4.030 12 C -0.173 4.173 13 C -0.003 4.003 14 N -0.236 5.236 15 C -0.011 4.011 16 N -0.236 5.236 17 C -0.020 4.020 18 H 0.072 0.928 19 H 0.007 0.993 20 H 0.049 0.951 21 H 0.147 0.853 22 H 0.054 0.946 23 H 0.099 0.901 24 H 0.186 0.814 25 H 0.208 0.792 26 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.531 -12.196 -0.041 13.011 hybrid contribution -0.556 1.618 -0.925 1.945 sum 3.975 -10.578 -0.965 11.341 Atomic orbital electron populations 1.69954 1.06090 1.26939 1.50654 1.24985 0.94895 0.99422 0.95191 0.86463 0.79807 0.82874 0.78080 1.20681 1.21173 1.19736 1.21154 0.93545 0.90121 1.50725 0.91935 1.19607 0.90513 0.87087 0.96071 1.60775 1.21173 1.00446 1.49127 1.20761 0.92689 0.88020 1.01492 1.21859 1.00724 0.99411 0.95308 1.23183 0.89338 0.89125 0.98702 1.68421 1.12145 1.12047 1.31021 1.24862 0.96107 0.97150 0.83004 1.68388 1.12080 1.11991 1.31165 1.23159 0.90262 0.90139 0.98460 0.92811 0.99294 0.95113 0.85348 0.94619 0.90135 0.81383 0.79217 0.81846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 13.29 55.43 0.74 -25.54 15 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 15 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 7 C -0.52 -14.34 9.32 -34.44 -0.32 -14.66 15 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 15 9 C 0.19 4.86 5.44 -4.97 -0.03 4.83 15 10 N -0.68 -13.87 6.48 -116.34 -0.75 -14.62 15 11 C 0.10 1.62 5.86 -4.98 -0.03 1.59 15 12 C -0.17 -2.42 5.43 -104.36 -0.57 -2.98 15 13 C 0.16 2.29 11.01 -17.20 -0.19 2.10 15 14 N -0.52 -7.40 10.44 -14.58 -0.15 -7.55 15 15 C 0.28 3.58 12.29 -92.15 -1.13 2.45 15 16 N -0.52 -7.28 10.44 -14.58 -0.15 -7.43 15 17 C 0.15 1.99 11.01 -17.21 -0.19 1.80 15 18 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 19 H -0.01 -0.28 8.14 -51.93 -0.42 -0.71 15 20 H 0.03 0.83 8.14 -51.93 -0.42 0.40 15 21 H 0.33 6.48 8.72 -39.29 -0.34 6.14 15 22 H 0.04 0.55 8.10 -51.93 -0.42 0.13 15 23 H 0.08 1.27 8.10 -51.93 -0.42 0.85 15 24 H 0.17 2.10 8.06 -52.49 -0.42 1.68 15 25 H 0.19 1.77 8.06 -52.48 -0.42 1.35 15 26 H 0.16 1.89 8.06 -52.49 -0.42 1.47 15 LS Contribution 238.81 15.07 3.60 3.60 Total: -1.00 -30.37 238.81 -7.14 -37.51 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -2.84 Total: 1.03 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.55 Total: -3.37 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.32 Total: -55.15 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.37 -7.14 -37.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054767174.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.456 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds