Wall clock time and date at job start Mon Mar 30 2020 02:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00307 * 2 1 4 4 H 1.48498 * 109.47281 * 240.00108 * 3 2 1 5 5 H 1.48504 * 109.47117 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47454 * 119.99808 * 3 2 1 7 7 C 1.37877 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00421 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99858 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47041 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99855 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47055 * 179.97438 * 11 10 9 13 13 C 1.38624 * 120.44417 * 94.99492 * 12 11 10 14 14 C 1.38574 * 118.39673 * 179.70022 * 13 12 11 15 15 N 1.32345 * 119.10916 * 0.28037 * 14 13 12 16 16 C 1.31789 * 120.81651 * 359.97438 * 15 14 13 17 17 N 1.31809 * 121.75220 * 0.02562 * 16 15 14 18 18 H 0.97003 * 120.00011 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.47189 * 60.00152 * 9 7 2 20 20 H 1.09001 * 109.47557 * 300.00011 * 9 7 2 21 21 H 1.00900 * 110.99903 * 303.95212 * 10 9 7 22 22 H 1.09001 * 109.46935 * 59.99579 * 11 10 9 23 23 H 1.08999 * 109.47081 * 299.99449 * 11 10 9 24 24 H 1.08002 * 120.80485 * 359.97438 * 13 12 11 25 25 H 1.08001 * 120.45088 * 180.29937 * 14 13 12 26 26 H 1.08001 * 119.12241 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2056 -3.6157 0.0027 11 6 1.5052 -4.9071 0.0032 12 6 2.5147 -6.0260 0.0036 13 6 2.9080 -6.6168 1.1944 14 6 3.8341 -7.6464 1.1449 15 7 4.3134 -8.0253 -0.0291 16 6 3.9201 -7.4369 -1.1407 17 7 3.0411 -6.4546 -1.1321 18 1 -0.4850 0.8401 -0.0004 19 1 0.6240 -2.5575 -0.8880 20 1 0.6246 -2.5563 0.8919 21 1 2.8404 -3.5494 -0.7787 22 1 0.8806 -4.9820 -0.8869 23 1 0.8801 -4.9810 0.8931 24 1 2.4992 -6.2856 2.1376 25 1 4.1602 -8.1334 2.0521 26 1 4.3287 -7.7683 -2.0839 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054788863.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:59 Heat of formation + Delta-G solvation = 21.004678 kcal Electronic energy + Delta-G solvation = -11134.526290 eV Core-core repulsion = 9019.170339 eV Total energy + Delta-G solvation = -2115.355951 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.90946 -37.43414 -35.12091 -34.11931 -32.99357 -29.52639 -26.81453 -25.28868 -23.84925 -23.05834 -18.83886 -18.48703 -17.64328 -16.72569 -16.36444 -16.25972 -15.80097 -14.92197 -14.86982 -14.45795 -13.94899 -13.30012 -13.11859 -12.68361 -12.61562 -12.10354 -11.81816 -11.65390 -11.38362 -10.67837 -10.55825 -10.22169 -9.26359 -8.23994 -6.35249 -0.03567 0.10734 1.41733 1.44884 1.53062 2.39381 2.78528 3.06324 3.09686 3.31251 3.55182 3.73676 4.07667 4.20320 4.42133 4.61878 4.67389 4.89989 5.04149 5.22214 5.46303 5.57177 5.96423 6.05198 6.31926 6.56361 6.82028 7.13079 7.35243 8.87366 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.076425 B = 0.006654 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.284819 B = 4207.235156 C = 4289.551541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.208 3.792 10 N -0.678 5.678 11 C 0.104 3.896 12 C 0.170 3.830 13 C -0.207 4.207 14 C 0.149 3.851 15 N -0.539 5.539 16 C 0.284 3.716 17 N -0.545 5.545 18 H 0.266 0.734 19 H -0.035 1.035 20 H 0.012 0.988 21 H 0.333 0.667 22 H 0.035 0.965 23 H 0.097 0.903 24 H 0.168 0.832 25 H 0.207 0.793 26 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.931 -12.945 1.890 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.081 3.919 10 N -0.308 5.308 11 C -0.026 4.026 12 C 0.024 3.976 13 C -0.229 4.229 14 C -0.017 4.017 15 N -0.253 5.253 16 C -0.004 4.004 17 N -0.260 5.260 18 H 0.075 0.925 19 H -0.018 1.018 20 H 0.030 0.970 21 H 0.150 0.850 22 H 0.053 0.947 23 H 0.115 0.885 24 H 0.185 0.815 25 H 0.223 0.777 26 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 6.213 -13.117 1.712 14.615 hybrid contribution -0.668 1.180 -0.293 1.387 sum 5.546 -11.937 1.419 13.239 Atomic orbital electron populations 1.70070 1.07709 1.28193 1.51180 1.25920 0.95808 1.03284 0.94443 0.85379 0.78123 0.77641 0.79117 1.19346 1.20627 1.19228 1.21465 0.93734 0.91413 1.51142 0.91986 1.19266 0.90509 0.88249 0.93901 1.60670 1.20335 1.00682 1.49156 1.20867 0.93024 0.86753 1.01909 1.21670 0.93135 0.93342 0.89449 1.23027 1.00605 0.98704 1.00602 1.23850 0.89444 0.91253 0.97107 1.68477 1.26711 1.30110 0.99998 1.25463 0.89333 0.87420 0.98162 1.68226 1.11840 1.14561 1.31390 0.92477 1.01767 0.97002 0.85043 0.94663 0.88475 0.81458 0.77680 0.76423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.90 13.29 21.45 0.28 -55.61 15 2 C 0.00 0.23 5.46 84.65 0.46 0.69 15 3 Si 0.97 44.19 29.54 68.60 2.03 46.21 15 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 7 C -0.54 -30.88 9.32 25.60 0.24 -30.64 15 8 H 0.06 3.47 7.81 -2.91 -0.02 3.45 15 9 C 0.21 11.12 5.44 85.56 0.47 11.59 15 10 N -0.68 -29.67 6.48 -521.96 -3.38 -33.05 15 11 C 0.10 3.73 6.04 85.56 0.52 4.25 15 12 C 0.17 5.27 6.34 42.58 0.27 5.54 15 13 C -0.21 -5.05 9.84 22.44 0.22 -4.83 15 14 C 0.15 3.11 11.30 84.70 0.96 4.07 15 15 N -0.54 -13.18 10.44 -200.05 -2.09 -15.27 15 16 C 0.28 7.26 12.29 180.88 2.22 9.48 15 17 N -0.54 -17.01 10.38 -188.06 -1.95 -18.96 15 18 H 0.27 14.99 8.31 -92.71 -0.77 14.22 15 19 H -0.04 -2.03 8.14 -2.39 -0.02 -2.05 15 20 H 0.01 0.67 8.14 -2.39 -0.02 0.65 15 21 H 0.33 14.69 8.71 -89.69 -0.78 13.91 15 22 H 0.04 1.32 8.14 -2.39 -0.02 1.30 15 23 H 0.10 3.20 8.06 -2.39 -0.02 3.18 15 24 H 0.17 3.34 8.06 -2.91 -0.02 3.32 15 25 H 0.21 2.48 8.06 -2.91 -0.02 2.46 15 26 H 0.22 4.02 8.06 -2.91 -0.02 3.99 15 Total: -1.00 -66.49 238.96 0.64 -65.85 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.40 Total: 10.68 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 5.35 Total: 0.15 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -7.14 Total: -122.89 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -66.49 0.64 -65.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054788863.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.851 kcal (2) G-P(sol) polarization free energy of solvation -66.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds