Wall clock time and date at job start Mon Mar 30 2020 01:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36399 * 120.34616 * 2 1 4 4 C 1.40203 * 119.26250 * 180.02562 * 3 2 1 5 5 C 1.35344 * 119.94860 * 359.74550 * 4 3 2 6 6 N 1.35760 * 120.70372 * 0.51331 * 5 4 3 7 7 C 1.46506 * 119.62759 * 179.75864 * 6 5 4 8 8 C 1.50695 * 109.46878 * 269.72813 * 7 6 5 9 9 H 1.08004 * 120.00546 * 0.27446 * 8 7 6 10 10 C 1.37885 * 119.99721 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99913 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47326 * 90.00142 * 12 10 8 14 14 H 1.48506 * 109.46545 * 209.99892 * 12 10 8 15 15 H 1.48498 * 109.47210 * 329.99603 * 12 10 8 16 16 C 1.34662 * 120.75141 * 359.48169 * 6 5 4 17 17 O 1.22056 * 119.98833 * 180.27714 * 16 6 5 18 18 H 1.09003 * 109.47211 * 269.97536 * 1 2 3 19 19 H 1.08995 * 109.47353 * 29.97529 * 1 2 3 20 20 H 1.09003 * 109.46916 * 149.97897 * 1 2 3 21 21 H 1.07994 * 120.36714 * 0.04578 * 3 2 1 22 22 H 1.07994 * 120.02049 * 179.97438 * 4 3 2 23 23 H 1.08004 * 119.65063 * 180.27390 * 5 4 3 24 24 H 1.08992 * 109.47424 * 149.72710 * 7 6 5 25 25 H 1.08997 * 109.46711 * 29.72310 * 7 6 5 26 26 H 0.97000 * 119.99651 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1771 0.0000 4 6 3.5979 1.1506 -0.0005 5 6 4.2512 -0.0347 0.0041 6 7 3.5636 -1.2053 -0.0011 7 6 4.2949 -2.4748 -0.0012 8 6 4.5451 -2.9102 -1.4220 9 1 4.1984 -2.2999 -2.2429 10 6 5.2221 -4.0846 -1.6740 11 7 5.4400 -4.4649 -2.9140 12 14 5.8284 -5.1363 -0.2543 13 1 4.7763 -6.1142 0.1221 14 1 7.0558 -5.8637 -0.6662 15 1 6.1355 -4.2669 0.9098 16 6 2.2170 -1.2128 -0.0005 17 8 1.6129 -2.2734 -0.0001 18 1 -0.3634 -0.0004 1.0277 19 1 -0.3634 0.8901 -0.5134 20 1 -0.3633 -0.8898 -0.5142 21 1 1.6678 2.1190 0.0007 22 1 4.1558 2.0753 -0.0010 23 1 5.3312 -0.0495 0.0082 24 1 3.7053 -3.2338 0.5129 25 1 5.2476 -2.3453 0.5122 26 1 5.9159 -5.2913 -3.0913 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057792377.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:32 Heat of formation + Delta-G solvation = -9.116621 kcal Electronic energy + Delta-G solvation = -11770.100461 eV Core-core repulsion = 9621.145601 eV Total energy + Delta-G solvation = -2148.954860 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.59006 -36.15698 -34.88901 -32.63445 -30.62532 -28.24883 -26.68854 -23.74682 -21.80924 -21.22183 -17.16975 -16.81061 -16.50928 -15.43100 -14.91385 -14.20974 -13.75580 -13.29632 -12.69464 -12.52095 -12.48056 -11.81473 -11.79394 -11.45793 -11.13657 -10.96028 -10.69481 -10.32275 -9.75731 -9.13425 -8.99993 -8.74228 -7.19411 -6.23614 -4.26460 1.42265 2.46974 3.19302 3.24655 3.27665 3.56576 4.25710 4.30325 5.04713 5.16293 5.19197 5.41938 5.59697 5.79451 5.92325 6.01575 6.28007 6.42356 6.55786 6.62305 6.71501 6.85140 7.18887 7.33991 7.91705 8.26233 8.76612 8.84305 9.32367 10.89026 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.052376 B = 0.011165 C = 0.010449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.466554 B = 2507.157094 C = 2678.961921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.228 4.228 3 C -0.026 4.026 4 C -0.264 4.264 5 C 0.157 3.843 6 N -0.469 5.469 7 C 0.190 3.810 8 C -0.540 4.540 9 H 0.078 0.922 10 C 0.079 3.921 11 N -0.888 5.888 12 Si 0.877 3.123 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.265 1.265 16 C 0.512 3.488 17 O -0.548 6.548 18 H 0.059 0.941 19 H 0.059 0.941 20 H 0.069 0.931 21 H 0.123 0.877 22 H 0.135 0.865 23 H 0.156 0.844 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.186 10.422 7.176 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.233 4.233 3 C -0.047 4.047 4 C -0.287 4.287 5 C 0.025 3.975 6 N -0.174 5.174 7 C 0.071 3.929 8 C -0.577 4.577 9 H 0.096 0.904 10 C -0.125 4.125 11 N -0.525 5.525 12 Si 0.704 3.296 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.190 1.190 16 C 0.313 3.687 17 O -0.431 6.431 18 H 0.078 0.922 19 H 0.078 0.922 20 H 0.088 0.912 21 H 0.141 0.859 22 H 0.153 0.847 23 H 0.174 0.826 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.468 9.490 7.053 12.078 hybrid contribution 0.537 -0.517 0.473 0.883 sum -1.931 8.972 7.526 11.869 Atomic orbital electron populations 1.20340 0.89969 1.02317 1.01487 1.20753 0.97437 0.92517 1.12583 1.21128 0.93921 0.97402 0.92298 1.20408 0.94458 0.96995 1.16861 1.21977 0.98646 0.85164 0.91663 1.45734 1.08177 1.08646 1.54837 1.20259 0.91736 0.80735 1.00198 1.21093 1.37998 1.08544 0.90107 0.90362 1.24815 0.95085 0.96787 0.95843 1.69878 1.40601 1.23336 1.18695 0.86830 0.78955 0.81305 0.82546 1.19558 1.20655 1.18991 1.16856 0.81124 0.90786 0.79904 1.90895 1.66633 1.32972 1.52581 0.92182 0.92242 0.91158 0.85892 0.84680 0.82635 0.92867 0.93804 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 9.81 36.00 0.35 -0.94 15 2 C -0.23 -4.16 5.90 -104.42 -0.62 -4.77 15 3 C -0.03 -0.38 9.75 -39.51 -0.39 -0.76 15 4 C -0.26 -3.78 10.01 -39.88 -0.40 -4.18 15 5 C 0.16 2.67 10.28 -16.85 -0.17 2.50 15 6 N -0.47 -10.20 2.57 -121.07 -0.31 -10.51 15 7 C 0.19 4.62 4.16 -5.19 -0.02 4.60 15 8 C -0.54 -15.42 9.94 -34.44 -0.34 -15.77 15 9 H 0.08 2.48 8.06 -52.48 -0.42 2.06 15 10 C 0.08 2.26 5.47 -17.82 -0.10 2.16 15 11 N -0.89 -26.97 13.96 55.43 0.77 -26.19 15 12 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 15 13 H -0.27 -6.52 7.11 56.52 0.40 -6.11 15 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 15 H -0.27 -5.87 6.54 56.52 0.37 -5.50 15 16 C 0.51 11.70 7.39 -15.44 -0.11 11.58 15 17 O -0.55 -14.61 15.76 4.87 0.08 -14.54 15 18 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 19 H 0.06 0.73 8.09 -51.93 -0.42 0.31 15 20 H 0.07 1.21 7.62 -51.93 -0.40 0.82 15 21 H 0.12 1.37 8.06 -52.49 -0.42 0.95 15 22 H 0.14 1.45 8.06 -52.49 -0.42 1.03 15 23 H 0.16 2.20 8.03 -52.48 -0.42 1.78 15 24 H 0.05 1.37 6.81 -51.93 -0.35 1.02 15 25 H 0.04 0.96 7.07 -51.93 -0.37 0.59 15 26 H 0.27 7.55 8.31 -40.82 -0.34 7.21 15 LS Contribution 231.46 15.07 3.49 3.49 Total: -1.00 -33.39 231.46 -5.25 -38.64 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -2.82 Total: -1.57 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.80 Total: -5.58 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.46 Total: -36.70 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.08 Total: -14.54 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -33.39 -5.25 -38.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057792377.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.525 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds