Wall clock time and date at job start Mon Mar 30 2020 01:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36399 * 120.34616 * 2 1 4 4 C 1.40203 * 119.26250 * 180.02562 * 3 2 1 5 5 C 1.35344 * 119.94860 * 359.74550 * 4 3 2 6 6 N 1.35760 * 120.70372 * 0.51331 * 5 4 3 7 7 C 1.46506 * 119.62759 * 179.75864 * 6 5 4 8 8 C 1.50695 * 109.46878 * 269.72813 * 7 6 5 9 9 H 1.08004 * 120.00546 * 0.27446 * 8 7 6 10 10 C 1.37885 * 119.99721 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99913 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47326 * 90.00142 * 12 10 8 14 14 H 1.48506 * 109.46545 * 209.99892 * 12 10 8 15 15 H 1.48498 * 109.47210 * 329.99603 * 12 10 8 16 16 C 1.34662 * 120.75141 * 359.48169 * 6 5 4 17 17 O 1.22056 * 119.98833 * 180.27714 * 16 6 5 18 18 H 1.09003 * 109.47211 * 269.97536 * 1 2 3 19 19 H 1.08995 * 109.47353 * 29.97529 * 1 2 3 20 20 H 1.09003 * 109.46916 * 149.97897 * 1 2 3 21 21 H 1.07994 * 120.36714 * 0.04578 * 3 2 1 22 22 H 1.07994 * 120.02049 * 179.97438 * 4 3 2 23 23 H 1.08004 * 119.65063 * 180.27390 * 5 4 3 24 24 H 1.08992 * 109.47424 * 149.72710 * 7 6 5 25 25 H 1.08997 * 109.46711 * 29.72310 * 7 6 5 26 26 H 0.97000 * 119.99651 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1771 0.0000 4 6 3.5979 1.1506 -0.0005 5 6 4.2512 -0.0347 0.0041 6 7 3.5636 -1.2053 -0.0011 7 6 4.2949 -2.4748 -0.0012 8 6 4.5451 -2.9102 -1.4220 9 1 4.1984 -2.2999 -2.2429 10 6 5.2221 -4.0846 -1.6740 11 7 5.4400 -4.4649 -2.9140 12 14 5.8284 -5.1363 -0.2543 13 1 4.7763 -6.1142 0.1221 14 1 7.0558 -5.8637 -0.6662 15 1 6.1355 -4.2669 0.9098 16 6 2.2170 -1.2128 -0.0005 17 8 1.6129 -2.2734 -0.0001 18 1 -0.3634 -0.0004 1.0277 19 1 -0.3634 0.8901 -0.5134 20 1 -0.3633 -0.8898 -0.5142 21 1 1.6678 2.1190 0.0007 22 1 4.1558 2.0753 -0.0010 23 1 5.3312 -0.0495 0.0082 24 1 3.7053 -3.2338 0.5129 25 1 5.2476 -2.3453 0.5122 26 1 5.9159 -5.2913 -3.0913 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057792377.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:32 Heat of formation + Delta-G solvation = -32.595946 kcal Electronic energy + Delta-G solvation = -11771.118601 eV Core-core repulsion = 9621.145601 eV Total energy + Delta-G solvation = -2149.972999 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.12193 -37.79555 -36.44388 -34.68700 -32.08728 -30.14793 -27.99055 -25.56986 -23.19272 -22.93508 -19.32222 -18.28295 -18.08063 -16.98999 -16.64041 -15.95270 -15.25321 -14.80961 -14.49344 -14.09169 -13.96360 -13.45635 -13.29314 -12.97705 -12.72644 -12.57651 -12.34101 -12.01345 -11.84630 -10.93888 -10.80378 -10.56792 -8.67084 -8.44301 -6.54300 0.08573 1.06979 1.29046 1.34742 1.42236 2.00367 2.23761 2.83488 2.89720 3.87887 3.94745 4.18616 4.39838 4.46369 4.54096 4.67663 4.84664 4.90280 5.06777 5.23510 5.30261 5.36702 5.53439 5.82219 6.06810 6.38680 6.46598 7.07429 7.24204 8.72443 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.052376 B = 0.011165 C = 0.010449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.466554 B = 2507.157094 C = 2678.961921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.258 4.258 3 C -0.001 4.001 4 C -0.233 4.233 5 C 0.123 3.877 6 N -0.482 5.482 7 C 0.200 3.800 8 C -0.550 4.550 9 H 0.026 0.974 10 C 0.018 3.982 11 N -0.938 5.938 12 Si 0.952 3.048 13 H -0.277 1.277 14 H -0.268 1.268 15 H -0.231 1.231 16 C 0.483 3.517 17 O -0.616 6.616 18 H 0.072 0.928 19 H 0.096 0.904 20 H 0.036 0.964 21 H 0.175 0.825 22 H 0.187 0.813 23 H 0.182 0.818 24 H 0.033 0.967 25 H 0.077 0.923 26 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.218 13.071 9.016 15.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.262 4.262 3 C -0.023 4.023 4 C -0.255 4.255 5 C -0.005 4.005 6 N -0.188 5.188 7 C 0.079 3.921 8 C -0.588 4.588 9 H 0.045 0.955 10 C -0.182 4.182 11 N -0.577 5.577 12 Si 0.773 3.227 13 H -0.202 1.202 14 H -0.193 1.193 15 H -0.154 1.154 16 C 0.288 3.712 17 O -0.504 6.504 18 H 0.090 0.910 19 H 0.115 0.885 20 H 0.055 0.945 21 H 0.193 0.807 22 H 0.204 0.796 23 H 0.199 0.801 24 H 0.051 0.949 25 H 0.095 0.905 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.473 12.224 8.900 15.192 hybrid contribution 0.219 -1.147 -0.187 1.182 sum -1.254 11.077 8.713 14.149 Atomic orbital electron populations 1.20367 0.88510 1.02451 1.02360 1.20970 0.98696 0.91821 1.14725 1.21726 0.94314 0.97984 0.88254 1.21117 0.94651 0.97692 1.12002 1.22681 1.00212 0.84507 0.93106 1.45665 1.08103 1.09250 1.55768 1.19954 0.92910 0.82123 0.97158 1.21260 1.37863 1.08466 0.91211 0.95539 1.25865 0.95082 0.98140 0.99064 1.70030 1.41874 1.24285 1.21469 0.85664 0.78281 0.79257 0.79480 1.20239 1.19313 1.15410 1.17747 0.81600 0.91850 0.79996 1.90834 1.67843 1.35206 1.56550 0.90978 0.88547 0.94464 0.80724 0.79559 0.80055 0.94925 0.90499 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.37 9.81 71.24 0.70 -1.67 15 2 C -0.26 -9.05 5.90 -19.73 -0.12 -9.17 15 3 C 0.00 -0.03 9.75 22.32 0.22 0.19 15 4 C -0.23 -5.48 10.01 22.08 0.22 -5.26 15 5 C 0.12 3.88 10.28 83.42 0.86 4.73 15 6 N -0.48 -21.05 2.57 -655.07 -1.68 -22.73 15 7 C 0.20 9.79 4.16 85.63 0.36 10.14 15 8 C -0.55 -32.70 9.94 25.60 0.25 -32.44 15 9 H 0.03 1.78 8.06 -2.91 -0.02 1.76 15 10 C 0.02 1.05 5.47 84.66 0.46 1.52 15 11 N -0.94 -58.96 13.96 21.45 0.30 -58.66 15 12 Si 0.95 43.32 27.47 68.60 1.88 45.21 15 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 15 14 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 15 H -0.23 -9.18 6.54 99.48 0.65 -8.53 15 16 C 0.48 22.68 7.39 84.82 0.63 23.30 15 17 O -0.62 -34.98 15.76 -5.50 -0.09 -35.06 15 18 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 19 H 0.10 2.07 8.09 -2.39 -0.02 2.05 15 20 H 0.04 1.33 7.62 -2.39 -0.02 1.31 15 21 H 0.18 2.61 8.06 -2.91 -0.02 2.59 15 22 H 0.19 2.58 8.06 -2.91 -0.02 2.56 15 23 H 0.18 4.56 8.03 -2.91 -0.02 4.54 15 24 H 0.03 1.73 6.81 -2.39 -0.02 1.71 15 25 H 0.08 3.22 7.07 -2.39 -0.02 3.21 15 26 H 0.27 15.81 8.31 -92.71 -0.77 15.04 15 Total: -1.00 -79.89 231.46 5.10 -74.79 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.11 Total: 5.12 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 3.58 Total: -8.65 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -1.38 Total: -81.39 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -0.09 Total: -35.06 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.21 kcal Total: -79.89 5.10 -74.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057792377.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.190 kcal (2) G-P(sol) polarization free energy of solvation -79.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds