Wall clock time and date at job start Mon Mar 30 2020 01:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.50703 * 109.41412 * 329.04315 * 3 2 1 5 5 H 1.08002 * 119.99859 * 122.45935 * 4 3 2 6 6 C 1.37881 * 120.00010 * 302.46028 * 4 3 2 7 7 N 1.31517 * 119.99839 * 170.18564 * 6 4 3 8 8 Si 1.86796 * 119.99897 * 350.18236 * 6 4 3 9 9 H 1.48504 * 109.47282 * 273.87900 * 8 6 4 10 10 H 1.48497 * 109.47283 * 33.87728 * 8 6 4 11 11 H 1.48501 * 109.47037 * 153.87850 * 8 6 4 12 12 C 1.52959 * 109.35976 * 88.86875 * 3 2 1 13 13 C 1.53233 * 109.40064 * 56.46801 * 12 3 2 14 14 C 1.51265 * 108.53279 * 54.63202 * 13 12 3 15 15 O 1.20770 * 120.84864 * 128.62908 * 14 13 12 16 16 C 1.51264 * 118.30290 * 308.64989 * 14 13 12 17 17 C 1.52961 * 109.41483 * 209.18676 * 3 2 1 18 18 H 0.96998 * 119.99615 * 179.97438 * 7 6 4 19 19 H 1.08994 * 109.48591 * 176.45386 * 12 3 2 20 20 H 1.08998 * 109.47989 * 296.49514 * 12 3 2 21 21 H 1.08996 * 109.62889 * 294.91907 * 13 12 3 22 22 H 1.08998 * 109.62123 * 174.34130 * 13 12 3 23 23 H 1.09000 * 109.62293 * 291.63213 * 16 14 13 24 24 H 1.09004 * 109.62801 * 171.06546 * 16 14 13 25 25 H 1.09009 * 109.47886 * 63.54054 * 17 3 2 26 26 H 1.09000 * 109.48471 * 183.56706 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1095 -1.2180 0.7311 5 1 3.7627 -1.9173 0.2305 6 6 2.7343 -1.4402 2.0392 7 7 3.0085 -2.5900 2.6156 8 14 1.8367 -0.1080 2.9925 9 1 2.8263 0.8130 3.6072 10 1 0.9578 0.6543 2.0697 11 1 1.0125 -0.7321 4.0585 12 6 3.1151 -0.0276 -1.4428 13 6 2.5300 1.1620 -2.2113 14 6 2.8625 2.4312 -1.4586 15 8 3.3799 3.3668 -2.0202 16 6 2.5310 2.4983 0.0158 17 6 3.1159 1.2604 0.7035 18 1 2.7448 -2.7462 3.5360 19 1 4.2031 0.0364 -1.4471 20 1 2.8035 -0.9570 -1.9195 21 1 1.4481 1.0533 -2.2859 22 1 2.9663 1.2033 -3.2093 23 1 1.4491 2.5134 0.1473 24 1 2.9678 3.3983 0.4487 25 1 2.8049 1.2437 1.7482 26 1 4.2040 1.2938 0.6487 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060130427.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:38 Heat of formation + Delta-G solvation = -14.484120 kcal Electronic energy + Delta-G solvation = -12174.770944 eV Core-core repulsion = 10025.583332 eV Total energy + Delta-G solvation = -2149.187612 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.78591 -37.40872 -34.42574 -32.71064 -31.01625 -29.47968 -24.35817 -22.98512 -21.79849 -19.46101 -17.40207 -16.16206 -15.28563 -15.11723 -14.64232 -14.03984 -13.92681 -13.27411 -12.80952 -12.49952 -12.28586 -12.07079 -11.80833 -11.53482 -11.04248 -10.76051 -10.64396 -10.35273 -10.27836 -9.54940 -9.47848 -8.95059 -8.76011 -6.42167 -4.48051 2.21384 3.08050 3.18405 3.24838 3.76946 3.84075 4.14009 4.40952 4.76552 5.07688 5.17882 5.28531 5.41387 5.60319 5.64334 5.90782 5.92439 6.01992 6.19409 6.39722 6.45727 6.67988 6.84410 7.23501 7.73980 8.11123 8.49549 8.72695 9.16702 10.68638 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.046629 B = 0.015395 C = 0.014754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.336216 B = 1818.330578 C = 1897.378803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.242 3.758 3 C 0.127 3.873 4 C -0.521 4.521 5 H 0.095 0.905 6 C 0.086 3.914 7 N -0.872 5.872 8 Si 0.861 3.139 9 H -0.270 1.270 10 H -0.250 1.250 11 H -0.293 1.293 12 C -0.084 4.084 13 C -0.178 4.178 14 C 0.372 3.628 15 O -0.472 6.472 16 C -0.180 4.180 17 C -0.107 4.107 18 H 0.271 0.729 19 H 0.082 0.918 20 H 0.080 0.920 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.309 6.477 -4.376 7.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.074 4.074 3 C 0.123 3.877 4 C -0.558 4.558 5 H 0.113 0.887 6 C -0.121 4.121 7 N -0.506 5.506 8 Si 0.690 3.310 9 H -0.196 1.196 10 H -0.175 1.175 11 H -0.220 1.220 12 C -0.122 4.122 13 C -0.215 4.215 14 C 0.249 3.751 15 O -0.347 6.347 16 C -0.218 4.218 17 C -0.145 4.145 18 H 0.081 0.919 19 H 0.101 0.899 20 H 0.099 0.901 21 H 0.110 0.890 22 H 0.106 0.894 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.083 0.917 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.149 6.828 -4.498 8.177 hybrid contribution -0.225 0.453 0.920 1.050 sum -0.373 7.281 -3.578 8.121 Atomic orbital electron populations 1.80990 1.13811 1.11804 1.11053 1.30254 0.96013 0.90408 0.90692 1.16494 0.79630 0.96461 0.95144 1.20664 1.31930 1.06199 0.97053 0.88723 1.25032 0.94418 0.95001 0.97647 1.69866 1.45095 1.21812 1.13851 0.87344 0.80460 0.82435 0.80745 1.19649 1.17491 1.22004 1.21435 1.01154 0.96383 0.93269 1.22460 1.03328 0.95361 1.00395 1.24887 0.72348 0.87068 0.90832 1.90351 1.33360 1.39123 1.71842 1.22466 1.03298 1.01416 0.94605 1.22053 1.01938 0.91335 0.99210 0.91883 0.89895 0.90104 0.88982 0.89381 0.89090 0.89534 0.91728 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.48 18.13 42.15 0.76 -10.72 15 2 C 0.24 5.24 7.73 -20.76 -0.16 5.08 15 3 C 0.13 2.53 0.47 -158.49 -0.07 2.46 15 4 C -0.52 -12.55 8.59 -34.44 -0.30 -12.85 15 5 H 0.09 2.41 7.99 -52.49 -0.42 1.99 15 6 C 0.09 2.23 5.38 -17.82 -0.10 2.13 15 7 N -0.87 -24.39 13.96 55.43 0.77 -23.62 15 8 Si 0.86 19.99 23.52 -169.99 -4.00 15.99 15 9 H -0.27 -5.91 6.97 56.52 0.39 -5.51 15 10 H -0.25 -5.67 4.69 56.52 0.27 -5.41 15 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 12 C -0.08 -1.36 4.70 -26.63 -0.13 -1.48 15 13 C -0.18 -2.63 5.78 -27.49 -0.16 -2.79 15 14 C 0.37 6.03 6.72 -28.48 -0.19 5.84 15 15 O -0.47 -8.62 17.89 5.99 0.11 -8.51 15 16 C -0.18 -2.90 5.78 -27.49 -0.16 -3.06 15 17 C -0.11 -1.94 4.29 -26.64 -0.11 -2.06 15 18 H 0.27 7.18 8.31 -40.82 -0.34 6.85 15 19 H 0.08 1.23 8.14 -51.93 -0.42 0.81 15 20 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 21 H 0.09 1.37 7.33 -51.93 -0.38 0.99 15 22 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.09 1.50 7.33 -51.93 -0.38 1.12 15 24 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 25 H 0.06 1.27 2.89 -51.92 -0.15 1.12 15 26 H 0.09 1.47 8.14 -51.93 -0.42 1.04 15 LS Contribution 216.26 15.07 3.26 3.26 Total: -1.00 -28.44 216.26 -3.19 -31.63 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -2.72 Total: -1.32 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -1.37 Total: -6.72 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 1.54 Total: -34.34 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.11 Total: -8.51 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.00 Total: 15.99 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -28.44 -3.19 -31.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060130427.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.150 kcal (2) G-P(sol) polarization free energy of solvation -28.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds