Wall clock time and date at job start Mon Mar 30 2020 01:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.50703 * 109.41412 * 329.04315 * 3 2 1 5 5 H 1.08002 * 119.99859 * 122.45935 * 4 3 2 6 6 C 1.37881 * 120.00010 * 302.46028 * 4 3 2 7 7 N 1.31517 * 119.99839 * 170.18564 * 6 4 3 8 8 Si 1.86796 * 119.99897 * 350.18236 * 6 4 3 9 9 H 1.48504 * 109.47282 * 273.87900 * 8 6 4 10 10 H 1.48497 * 109.47283 * 33.87728 * 8 6 4 11 11 H 1.48501 * 109.47037 * 153.87850 * 8 6 4 12 12 C 1.52959 * 109.35976 * 88.86875 * 3 2 1 13 13 C 1.53233 * 109.40064 * 56.46801 * 12 3 2 14 14 C 1.51265 * 108.53279 * 54.63202 * 13 12 3 15 15 O 1.20770 * 120.84864 * 128.62908 * 14 13 12 16 16 C 1.51264 * 118.30290 * 308.64989 * 14 13 12 17 17 C 1.52961 * 109.41483 * 209.18676 * 3 2 1 18 18 H 0.96998 * 119.99615 * 179.97438 * 7 6 4 19 19 H 1.08994 * 109.48591 * 176.45386 * 12 3 2 20 20 H 1.08998 * 109.47989 * 296.49514 * 12 3 2 21 21 H 1.08996 * 109.62889 * 294.91907 * 13 12 3 22 22 H 1.08998 * 109.62123 * 174.34130 * 13 12 3 23 23 H 1.09000 * 109.62293 * 291.63213 * 16 14 13 24 24 H 1.09004 * 109.62801 * 171.06546 * 16 14 13 25 25 H 1.09009 * 109.47886 * 63.54054 * 17 3 2 26 26 H 1.09000 * 109.48471 * 183.56706 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1095 -1.2180 0.7311 5 1 3.7627 -1.9173 0.2305 6 6 2.7343 -1.4402 2.0392 7 7 3.0085 -2.5900 2.6156 8 14 1.8367 -0.1080 2.9925 9 1 2.8263 0.8130 3.6072 10 1 0.9578 0.6543 2.0697 11 1 1.0125 -0.7321 4.0585 12 6 3.1151 -0.0276 -1.4428 13 6 2.5300 1.1620 -2.2113 14 6 2.8625 2.4312 -1.4586 15 8 3.3799 3.3668 -2.0202 16 6 2.5310 2.4983 0.0158 17 6 3.1159 1.2604 0.7035 18 1 2.7448 -2.7462 3.5360 19 1 4.2031 0.0364 -1.4471 20 1 2.8035 -0.9570 -1.9195 21 1 1.4481 1.0533 -2.2859 22 1 2.9663 1.2033 -3.2093 23 1 1.4491 2.5134 0.1473 24 1 2.9678 3.3983 0.4487 25 1 2.8049 1.2437 1.7482 26 1 4.2040 1.2938 0.6487 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060130427.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:38 Heat of formation + Delta-G solvation = -33.170540 kcal Electronic energy + Delta-G solvation = -12175.581248 eV Core-core repulsion = 10025.583332 eV Total energy + Delta-G solvation = -2149.997916 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.16882 -38.93053 -36.12160 -34.58646 -32.32241 -31.06277 -26.08961 -24.33030 -23.37598 -20.86706 -19.18499 -17.65811 -16.96093 -16.42516 -16.10609 -15.56379 -15.46729 -14.86823 -14.53787 -14.24899 -13.84462 -13.47741 -13.31233 -13.08957 -12.50377 -12.38718 -12.28187 -11.91653 -11.81701 -11.32551 -11.11196 -10.75268 -10.27372 -8.42176 -6.48292 0.93405 1.24102 1.32587 1.36414 2.04849 2.08834 2.22871 2.90172 3.15463 3.49978 3.81994 3.94985 4.09224 4.25939 4.35098 4.55129 4.62445 4.67406 4.92647 5.08737 5.14459 5.30958 5.44593 5.45831 6.16545 6.47328 6.58375 6.93273 7.19042 8.71901 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.046629 B = 0.015395 C = 0.014754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.336216 B = 1818.330578 C = 1897.378803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C 0.251 3.749 3 C 0.121 3.879 4 C -0.508 4.508 5 H 0.075 0.925 6 C 0.038 3.962 7 N -0.921 5.921 8 Si 0.903 3.097 9 H -0.247 1.247 10 H -0.243 1.243 11 H -0.314 1.314 12 C -0.081 4.081 13 C -0.170 4.170 14 C 0.378 3.622 15 O -0.490 6.490 16 C -0.176 4.176 17 C -0.106 4.106 18 H 0.269 0.731 19 H 0.100 0.900 20 H 0.083 0.917 21 H 0.092 0.908 22 H 0.113 0.887 23 H 0.088 0.912 24 H 0.107 0.893 25 H 0.051 0.949 26 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 8.077 -5.328 9.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.200 5.200 2 C -0.064 4.064 3 C 0.117 3.883 4 C -0.546 4.546 5 H 0.093 0.907 6 C -0.164 4.164 7 N -0.558 5.558 8 Si 0.732 3.268 9 H -0.172 1.172 10 H -0.168 1.168 11 H -0.243 1.243 12 C -0.119 4.119 13 C -0.207 4.207 14 C 0.256 3.744 15 O -0.366 6.366 16 C -0.213 4.213 17 C -0.145 4.145 18 H 0.078 0.922 19 H 0.119 0.881 20 H 0.102 0.898 21 H 0.110 0.890 22 H 0.131 0.869 23 H 0.107 0.893 24 H 0.125 0.875 25 H 0.070 0.930 26 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.169 8.453 -5.466 10.068 hybrid contribution -0.307 -0.084 1.150 1.193 sum -0.139 8.370 -4.316 9.418 Atomic orbital electron populations 1.81004 1.14579 1.12451 1.11985 1.30515 0.96258 0.89732 0.89944 1.16697 0.78551 0.95709 0.97364 1.20920 1.30186 1.06932 0.96581 0.90674 1.25660 0.95529 0.96250 0.98916 1.69981 1.47827 1.23818 1.14211 0.86675 0.79907 0.80878 0.79363 1.17175 1.16785 1.24267 1.21428 1.02250 0.97393 0.90839 1.22416 1.03411 0.93691 1.01213 1.24972 0.71506 0.87119 0.90756 1.90362 1.34214 1.39875 1.72135 1.22431 1.03150 1.01152 0.94606 1.21970 1.03183 0.91103 0.98199 0.92180 0.88130 0.89806 0.88962 0.86887 0.89346 0.87495 0.93046 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -23.19 18.13 20.01 0.36 -22.82 15 2 C 0.25 10.38 7.73 89.44 0.69 11.07 15 3 C 0.12 4.56 0.47 -54.76 -0.03 4.53 15 4 C -0.51 -24.06 8.59 25.60 0.22 -23.84 15 5 H 0.08 3.81 7.99 -2.91 -0.02 3.78 15 6 C 0.04 1.97 5.38 84.66 0.46 2.43 15 7 N -0.92 -52.39 13.96 21.45 0.30 -52.10 15 8 Si 0.90 40.65 23.52 68.60 1.61 42.27 15 9 H -0.25 -10.06 6.97 99.48 0.69 -9.37 15 10 H -0.24 -10.53 4.69 99.48 0.47 -10.06 15 11 H -0.31 -15.12 7.11 99.48 0.71 -14.41 15 12 C -0.08 -2.37 4.70 30.66 0.14 -2.23 15 13 C -0.17 -4.41 5.78 30.11 0.17 -4.24 15 14 C 0.38 10.94 6.72 29.46 0.20 11.14 15 15 O -0.49 -16.23 17.89 -1.48 -0.03 -16.25 15 16 C -0.18 -5.06 5.78 30.10 0.17 -4.88 15 17 C -0.11 -3.53 4.29 30.66 0.13 -3.40 15 18 H 0.27 14.62 8.31 -92.71 -0.77 13.85 15 19 H 0.10 2.63 8.14 -2.39 -0.02 2.62 15 20 H 0.08 2.44 8.14 -2.39 -0.02 2.42 15 21 H 0.09 2.46 7.33 -2.39 -0.02 2.44 15 22 H 0.11 2.44 8.14 -2.39 -0.02 2.42 15 23 H 0.09 2.64 7.33 -2.39 -0.02 2.62 15 24 H 0.11 2.67 8.14 -2.39 -0.02 2.65 15 25 H 0.05 1.87 2.89 -2.38 -0.01 1.86 15 26 H 0.11 3.17 8.14 -2.39 -0.02 3.15 15 Total: -1.00 -59.70 216.26 5.35 -54.35 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 0.93 Total: 3.97 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 2.16 Total: -9.42 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: 0.66 Total: -74.92 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.03 Total: -16.25 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.61 Total: 42.27 kcal Total: -59.70 5.35 -54.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060130427.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.184 kcal (2) G-P(sol) polarization free energy of solvation -59.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds