Wall clock time and date at job start Mon Mar 30 2020 01:44:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86797 * 120.00126 * 2 1
4 4 H 1.48502 * 109.47038 * 269.99662 * 3 2 1
5 5 H 1.48501 * 109.47038 * 29.99881 * 3 2 1
6 6 H 1.48496 * 109.47143 * 149.99412 * 3 2 1
7 7 C 1.38812 * 119.99881 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00114 * 0.02562 * 7 2 1
9 9 N 1.36935 * 120.00153 * 180.02562 * 7 2 1
10 10 O 1.41600 * 120.00442 * 180.02562 * 9 7 2
11 11 C 1.42893 * 113.99989 * 180.02562 * 10 9 7
12 12 C 1.50707 * 109.47070 * 179.97438 * 11 10 9
13 13 C 1.38238 * 119.99792 * 89.99993 * 12 11 10
14 14 C 1.38235 * 119.99712 * 179.97438 * 13 12 11
15 15 C 1.38234 * 120.00220 * 359.97124 * 14 13 12
16 16 C 1.38233 * 120.00037 * 0.28719 * 15 14 13
17 17 C 1.38234 * 120.00179 * 269.97930 * 12 11 10
18 18 H 0.96997 * 120.00028 * 0.02562 * 1 2 3
19 19 H 0.97001 * 119.99776 * 0.02562 * 9 7 2
20 20 H 1.09005 * 109.47744 * 60.00324 * 11 10 9
21 21 H 1.09000 * 109.47353 * 299.99523 * 11 10 9
22 22 H 1.08005 * 120.00068 * 359.97438 * 13 12 11
23 23 H 1.07999 * 119.99770 * 179.97438 * 14 13 12
24 24 H 1.08002 * 119.99744 * 180.02562 * 15 14 13
25 25 H 1.07998 * 120.00395 * 179.72811 * 16 15 14
26 26 H 1.07999 * 119.99968 * 359.97438 * 17 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4978 2.0463 -1.4001
5 1 1.4477 2.6526 0.7000
6 1 3.5477 1.4401 0.7001
7 6 2.0102 -1.2022 0.0005
8 1 1.4702 -2.1375 0.0005
9 7 3.3796 -1.2022 0.0011
10 8 4.0876 -2.4285 0.0011
11 6 5.5087 -2.2791 0.0022
12 6 6.1569 -3.6397 0.0028
13 6 6.4551 -4.2636 -1.1942
14 6 7.0501 -5.5114 -1.1937
15 6 7.3474 -6.1349 0.0037
16 6 7.0443 -5.5133 1.2006
17 6 6.4536 -4.2635 1.2001
18 1 -0.4850 0.8400 -0.0004
19 1 3.8646 -0.3622 0.0014
20 1 5.8158 -1.7305 0.8927
21 1 5.8171 -1.7298 -0.8873
22 1 6.2232 -3.7762 -2.1297
23 1 7.2827 -5.9990 -2.1288
24 1 7.8127 -7.1095 0.0040
25 1 7.2726 -6.0023 2.1361
26 1 6.2212 -3.7757 2.1353
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000060206580.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:44:46
Heat of formation + Delta-G solvation = 47.469330 kcal
Electronic energy + Delta-G solvation = -11179.333097 eV
Core-core repulsion = 9032.831989 eV
Total energy + Delta-G solvation = -2146.501109 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 193.084 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-39.17853 -36.38639 -33.08836 -31.58235 -30.84701 -29.46784 -25.60220 -22.80606
-22.51336 -21.20144 -17.97481 -16.69603 -16.41129 -15.34852 -15.18131 -14.44344
-13.70042 -13.41741 -13.29177 -12.85259 -12.61688 -11.94277 -11.76788 -11.17588
-10.98412 -10.84208 -10.35744 -10.24725 -9.68581 -8.86979 -8.81163 -8.76352
-7.24210 -5.82679 -3.19316 1.33504 1.45893 3.29576 3.31834 3.35960
3.62295 4.08898 4.49387 4.90726 4.96850 5.06428 5.21384 5.43353
5.49068 5.53421 5.74999 5.77677 6.03166 6.11126 6.23622 6.49526
6.52487 6.71989 7.03562 8.06064 8.30348 9.20628 9.87901 9.92915
11.34589
Molecular weight = 193.08amu
Principal moments of inertia in cm(-1)
A = 0.077594 B = 0.007214 C = 0.007111
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 360.764701 B = 3880.313737 C = 3936.591436
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.928 5.928
2 C 0.009 3.991
3 Si 0.880 3.120
4 H -0.280 1.280
5 H -0.284 1.284
6 H -0.278 1.278
7 C -0.223 4.223
8 H 0.100 0.900
9 N -0.621 5.621
10 O -0.169 6.169
11 C 0.080 3.920
12 C -0.076 4.076
13 C -0.098 4.098
14 C -0.126 4.126
15 C -0.121 4.121
16 C -0.126 4.126
17 C -0.098 4.098
18 H 0.264 0.736
19 H 0.376 0.624
20 H 0.054 0.946
21 H 0.054 0.946
22 H 0.124 0.876
23 H 0.122 0.878
24 H 0.120 0.880
25 H 0.122 0.878
26 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.004 -7.702 -0.003 17.761
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.577 5.577
2 C -0.187 4.187
3 Si 0.710 3.290
4 H -0.206 1.206
5 H -0.210 1.210
6 H -0.205 1.205
7 C -0.351 4.351
8 H 0.117 0.883
9 N -0.320 5.320
10 O -0.172 6.172
11 C 0.002 3.998
12 C -0.078 4.078
13 C -0.116 4.116
14 C -0.144 4.144
15 C -0.139 4.139
16 C -0.144 4.144
17 C -0.117 4.117
18 H 0.075 0.925
19 H 0.215 0.785
20 H 0.072 0.928
21 H 0.072 0.928
22 H 0.142 0.858
23 H 0.140 0.860
24 H 0.138 0.862
25 H 0.140 0.860
26 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges 15.683 -7.984 -0.002 17.598
hybrid contribution 0.791 1.291 0.021 1.514
sum 16.473 -6.693 0.019 17.781
Atomic orbital electron populations
1.69641 1.04566 1.26033 1.57458 1.24278 0.95187 0.96563 1.02659
0.86624 0.79131 0.85166 0.78089 1.20611 1.20963 1.20454 1.18846
0.77507 0.95724 1.43012 0.88258 1.44182 1.00924 0.91950 1.94949
1.90285 1.13459 1.16147 1.97285 1.21379 0.84341 0.93392 1.00674
1.19624 0.98597 0.95971 0.93563 1.21130 0.97610 0.95113 0.97791
1.21120 0.99776 0.95380 0.98093 1.21145 1.00305 0.99736 0.92695
1.21120 0.99783 0.95358 0.98100 1.21129 0.97642 0.95094 0.97788
0.92546 0.78523 0.92826 0.92804 0.85772 0.86046 0.86244 0.86048
0.85789
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 39.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -29.22 13.97 55.49 0.78 -28.45 15
2 C 0.01 0.27 5.50 -17.43 -0.10 0.18 15
3 Si 0.88 21.71 27.74 -169.99 -4.71 17.00 15
4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15
5 H -0.28 -6.99 7.11 56.52 0.40 -6.59 15
6 H -0.28 -6.42 6.52 56.52 0.37 -6.05 15
7 C -0.22 -6.68 10.89 -15.06 -0.16 -6.84 15
8 H 0.10 3.22 8.06 -52.49 -0.42 2.79 15
9 N -0.62 -16.26 6.25 31.50 0.20 -16.07 15
10 O -0.17 -4.03 11.41 -11.47 -0.13 -4.16 15
11 C 0.08 1.44 6.35 36.01 0.23 1.67 15
12 C -0.08 -1.20 5.51 -104.62 -0.58 -1.78 15
13 C -0.10 -1.39 9.70 -39.58 -0.38 -1.78 15
14 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 15
15 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 15
16 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 15
17 C -0.10 -1.40 9.70 -39.58 -0.38 -1.78 15
18 H 0.26 7.81 8.31 -40.82 -0.34 7.47 15
19 H 0.38 9.10 5.60 -40.82 -0.23 8.87 15
20 H 0.05 0.90 8.08 -51.93 -0.42 0.48 15
21 H 0.05 0.89 8.09 -51.93 -0.42 0.47 15
22 H 0.12 1.64 8.06 -52.48 -0.42 1.22 15
23 H 0.12 1.15 8.06 -52.49 -0.42 0.73 15
24 H 0.12 1.03 8.06 -52.49 -0.42 0.60 15
25 H 0.12 1.15 8.06 -52.49 -0.42 0.73 15
26 H 0.12 1.64 8.06 -52.49 -0.42 1.22 15
LS Contribution 236.32 15.07 3.56 3.56
Total: -1.00 -32.84 236.32 -5.65 -38.49
By element:
Atomic # 1 Polarization: 8.34 SS G_CDS: -2.77 Total: 5.57 kcal
Atomic # 6 Polarization: -13.36 SS G_CDS: -2.57 Total: -15.93 kcal
Atomic # 7 Polarization: -45.49 SS G_CDS: 0.97 Total: -44.52 kcal
Atomic # 8 Polarization: -4.03 SS G_CDS: -0.13 Total: -4.16 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal
Total LS contribution 3.56 Total: 3.56 kcal
Total: -32.84 -5.65 -38.49 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000060206580.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.960 kcal
(2) G-P(sol) polarization free energy of solvation -32.836 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.124 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.655 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.469 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds