Wall clock time and date at job start Mon Mar 30 2020 01:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00126 * 2 1 4 4 H 1.48502 * 109.47038 * 269.99662 * 3 2 1 5 5 H 1.48501 * 109.47038 * 29.99881 * 3 2 1 6 6 H 1.48496 * 109.47143 * 149.99412 * 3 2 1 7 7 C 1.38812 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00114 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00153 * 180.02562 * 7 2 1 10 10 O 1.41600 * 120.00442 * 180.02562 * 9 7 2 11 11 C 1.42893 * 113.99989 * 180.02562 * 10 9 7 12 12 C 1.50707 * 109.47070 * 179.97438 * 11 10 9 13 13 C 1.38238 * 119.99792 * 89.99993 * 12 11 10 14 14 C 1.38235 * 119.99712 * 179.97438 * 13 12 11 15 15 C 1.38234 * 120.00220 * 359.97124 * 14 13 12 16 16 C 1.38233 * 120.00037 * 0.28719 * 15 14 13 17 17 C 1.38234 * 120.00179 * 269.97930 * 12 11 10 18 18 H 0.96997 * 120.00028 * 0.02562 * 1 2 3 19 19 H 0.97001 * 119.99776 * 0.02562 * 9 7 2 20 20 H 1.09005 * 109.47744 * 60.00324 * 11 10 9 21 21 H 1.09000 * 109.47353 * 299.99523 * 11 10 9 22 22 H 1.08005 * 120.00068 * 359.97438 * 13 12 11 23 23 H 1.07999 * 119.99770 * 179.97438 * 14 13 12 24 24 H 1.08002 * 119.99744 * 180.02562 * 15 14 13 25 25 H 1.07998 * 120.00395 * 179.72811 * 16 15 14 26 26 H 1.07999 * 119.99968 * 359.97438 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 8 4.0876 -2.4285 0.0011 11 6 5.5087 -2.2791 0.0022 12 6 6.1569 -3.6397 0.0028 13 6 6.4551 -4.2636 -1.1942 14 6 7.0501 -5.5114 -1.1937 15 6 7.3474 -6.1349 0.0037 16 6 7.0443 -5.5133 1.2006 17 6 6.4536 -4.2635 1.2001 18 1 -0.4850 0.8400 -0.0004 19 1 3.8646 -0.3622 0.0014 20 1 5.8158 -1.7305 0.8927 21 1 5.8171 -1.7298 -0.8873 22 1 6.2232 -3.7762 -2.1297 23 1 7.2827 -5.9990 -2.1288 24 1 7.8127 -7.1095 0.0040 25 1 7.2726 -6.0023 2.1361 26 1 6.2212 -3.7757 2.1353 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060206580.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:46 Heat of formation + Delta-G solvation = 47.469330 kcal Electronic energy + Delta-G solvation = -11179.333097 eV Core-core repulsion = 9032.831989 eV Total energy + Delta-G solvation = -2146.501109 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.17853 -36.38639 -33.08836 -31.58235 -30.84701 -29.46784 -25.60220 -22.80606 -22.51336 -21.20144 -17.97481 -16.69603 -16.41129 -15.34852 -15.18131 -14.44344 -13.70042 -13.41741 -13.29177 -12.85259 -12.61688 -11.94277 -11.76788 -11.17588 -10.98412 -10.84208 -10.35744 -10.24725 -9.68581 -8.86979 -8.81163 -8.76352 -7.24210 -5.82679 -3.19316 1.33504 1.45893 3.29576 3.31834 3.35960 3.62295 4.08898 4.49387 4.90726 4.96850 5.06428 5.21384 5.43353 5.49068 5.53421 5.74999 5.77677 6.03166 6.11126 6.23622 6.49526 6.52487 6.71989 7.03562 8.06064 8.30348 9.20628 9.87901 9.92915 11.34589 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.077594 B = 0.007214 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.764701 B = 3880.313737 C = 3936.591436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.880 3.120 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.223 4.223 8 H 0.100 0.900 9 N -0.621 5.621 10 O -0.169 6.169 11 C 0.080 3.920 12 C -0.076 4.076 13 C -0.098 4.098 14 C -0.126 4.126 15 C -0.121 4.121 16 C -0.126 4.126 17 C -0.098 4.098 18 H 0.264 0.736 19 H 0.376 0.624 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.124 0.876 23 H 0.122 0.878 24 H 0.120 0.880 25 H 0.122 0.878 26 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.004 -7.702 -0.003 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.710 3.290 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.205 1.205 7 C -0.351 4.351 8 H 0.117 0.883 9 N -0.320 5.320 10 O -0.172 6.172 11 C 0.002 3.998 12 C -0.078 4.078 13 C -0.116 4.116 14 C -0.144 4.144 15 C -0.139 4.139 16 C -0.144 4.144 17 C -0.117 4.117 18 H 0.075 0.925 19 H 0.215 0.785 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.142 0.858 23 H 0.140 0.860 24 H 0.138 0.862 25 H 0.140 0.860 26 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 15.683 -7.984 -0.002 17.598 hybrid contribution 0.791 1.291 0.021 1.514 sum 16.473 -6.693 0.019 17.781 Atomic orbital electron populations 1.69641 1.04566 1.26033 1.57458 1.24278 0.95187 0.96563 1.02659 0.86624 0.79131 0.85166 0.78089 1.20611 1.20963 1.20454 1.18846 0.77507 0.95724 1.43012 0.88258 1.44182 1.00924 0.91950 1.94949 1.90285 1.13459 1.16147 1.97285 1.21379 0.84341 0.93392 1.00674 1.19624 0.98597 0.95971 0.93563 1.21130 0.97610 0.95113 0.97791 1.21120 0.99776 0.95380 0.98093 1.21145 1.00305 0.99736 0.92695 1.21120 0.99783 0.95358 0.98100 1.21129 0.97642 0.95094 0.97788 0.92546 0.78523 0.92826 0.92804 0.85772 0.86046 0.86244 0.86048 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.22 13.97 55.49 0.78 -28.45 15 2 C 0.01 0.27 5.50 -17.43 -0.10 0.18 15 3 Si 0.88 21.71 27.74 -169.99 -4.71 17.00 15 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 5 H -0.28 -6.99 7.11 56.52 0.40 -6.59 15 6 H -0.28 -6.42 6.52 56.52 0.37 -6.05 15 7 C -0.22 -6.68 10.89 -15.06 -0.16 -6.84 15 8 H 0.10 3.22 8.06 -52.49 -0.42 2.79 15 9 N -0.62 -16.26 6.25 31.50 0.20 -16.07 15 10 O -0.17 -4.03 11.41 -11.47 -0.13 -4.16 15 11 C 0.08 1.44 6.35 36.01 0.23 1.67 15 12 C -0.08 -1.20 5.51 -104.62 -0.58 -1.78 15 13 C -0.10 -1.39 9.70 -39.58 -0.38 -1.78 15 14 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 15 15 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 15 16 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 15 17 C -0.10 -1.40 9.70 -39.58 -0.38 -1.78 15 18 H 0.26 7.81 8.31 -40.82 -0.34 7.47 15 19 H 0.38 9.10 5.60 -40.82 -0.23 8.87 15 20 H 0.05 0.90 8.08 -51.93 -0.42 0.48 15 21 H 0.05 0.89 8.09 -51.93 -0.42 0.47 15 22 H 0.12 1.64 8.06 -52.48 -0.42 1.22 15 23 H 0.12 1.15 8.06 -52.49 -0.42 0.73 15 24 H 0.12 1.03 8.06 -52.49 -0.42 0.60 15 25 H 0.12 1.15 8.06 -52.49 -0.42 0.73 15 26 H 0.12 1.64 8.06 -52.49 -0.42 1.22 15 LS Contribution 236.32 15.07 3.56 3.56 Total: -1.00 -32.84 236.32 -5.65 -38.49 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -2.77 Total: 5.57 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -2.57 Total: -15.93 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.97 Total: -44.52 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.13 Total: -4.16 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.84 -5.65 -38.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060206580.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.960 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds