Wall clock time and date at job start Mon Mar 30 2020 01:44:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86797 * 120.00126 * 2 1
4 4 H 1.48502 * 109.47038 * 269.99662 * 3 2 1
5 5 H 1.48501 * 109.47038 * 29.99881 * 3 2 1
6 6 H 1.48496 * 109.47143 * 149.99412 * 3 2 1
7 7 C 1.38812 * 119.99881 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00114 * 0.02562 * 7 2 1
9 9 N 1.36935 * 120.00153 * 180.02562 * 7 2 1
10 10 O 1.41600 * 120.00442 * 180.02562 * 9 7 2
11 11 C 1.42893 * 113.99989 * 180.02562 * 10 9 7
12 12 C 1.50707 * 109.47070 * 179.97438 * 11 10 9
13 13 C 1.38238 * 119.99792 * 89.99993 * 12 11 10
14 14 C 1.38235 * 119.99712 * 179.97438 * 13 12 11
15 15 C 1.38234 * 120.00220 * 359.97124 * 14 13 12
16 16 C 1.38233 * 120.00037 * 0.28719 * 15 14 13
17 17 C 1.38234 * 120.00179 * 269.97930 * 12 11 10
18 18 H 0.96997 * 120.00028 * 0.02562 * 1 2 3
19 19 H 0.97001 * 119.99776 * 0.02562 * 9 7 2
20 20 H 1.09005 * 109.47744 * 60.00324 * 11 10 9
21 21 H 1.09000 * 109.47353 * 299.99523 * 11 10 9
22 22 H 1.08005 * 120.00068 * 359.97438 * 13 12 11
23 23 H 1.07999 * 119.99770 * 179.97438 * 14 13 12
24 24 H 1.08002 * 119.99744 * 180.02562 * 15 14 13
25 25 H 1.07998 * 120.00395 * 179.72811 * 16 15 14
26 26 H 1.07999 * 119.99968 * 359.97438 * 17 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4978 2.0463 -1.4001
5 1 1.4477 2.6526 0.7000
6 1 3.5477 1.4401 0.7001
7 6 2.0102 -1.2022 0.0005
8 1 1.4702 -2.1375 0.0005
9 7 3.3796 -1.2022 0.0011
10 8 4.0876 -2.4285 0.0011
11 6 5.5087 -2.2791 0.0022
12 6 6.1569 -3.6397 0.0028
13 6 6.4551 -4.2636 -1.1942
14 6 7.0501 -5.5114 -1.1937
15 6 7.3474 -6.1349 0.0037
16 6 7.0443 -5.5133 1.2006
17 6 6.4536 -4.2635 1.2001
18 1 -0.4850 0.8400 -0.0004
19 1 3.8646 -0.3622 0.0014
20 1 5.8158 -1.7305 0.8927
21 1 5.8171 -1.7298 -0.8873
22 1 6.2232 -3.7762 -2.1297
23 1 7.2827 -5.9990 -2.1288
24 1 7.8127 -7.1095 0.0040
25 1 7.2726 -6.0023 2.1361
26 1 6.2212 -3.7757 2.1353
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000060206580.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:44:46
Heat of formation + Delta-G solvation = 25.926540 kcal
Electronic energy + Delta-G solvation = -11180.267263 eV
Core-core repulsion = 9032.831989 eV
Total energy + Delta-G solvation = -2147.435274 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 193.084 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.23315 -38.12038 -35.12867 -33.09247 -31.82545 -31.40284 -26.95668 -25.00926
-23.50118 -22.32032 -20.07103 -18.37158 -17.73061 -16.62360 -16.59011 -16.06301
-15.07246 -15.05145 -14.42719 -14.28006 -14.27022 -13.61782 -13.25638 -13.04493
-12.29656 -12.19652 -11.95519 -11.88808 -11.84251 -10.89791 -9.85295 -9.80666
-9.36003 -8.11892 -5.50248 0.27983 0.47099 1.33168 1.40460 1.44847
2.02602 2.39568 2.90071 3.18162 3.83212 3.86414 4.11012 4.27508
4.28501 4.32461 4.55420 4.64560 4.72685 5.02675 5.13084 5.52054
5.56920 5.65052 5.77651 6.02764 6.07194 6.99304 7.66966 7.84584
9.08516
Molecular weight = 193.08amu
Principal moments of inertia in cm(-1)
A = 0.077594 B = 0.007214 C = 0.007111
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 360.764701 B = 3880.313737 C = 3936.591436
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.974 5.974
2 C -0.050 4.050
3 Si 0.961 3.039
4 H -0.267 1.267
5 H -0.280 1.280
6 H -0.251 1.251
7 C -0.236 4.236
8 H 0.054 0.946
9 N -0.622 5.622
10 O -0.193 6.193
11 C 0.076 3.924
12 C -0.105 4.105
13 C -0.115 4.115
14 C -0.127 4.127
15 C -0.115 4.115
16 C -0.127 4.127
17 C -0.115 4.115
18 H 0.268 0.732
19 H 0.386 0.614
20 H 0.063 0.937
21 H 0.065 0.935
22 H 0.125 0.875
23 H 0.149 0.851
24 H 0.155 0.845
25 H 0.149 0.851
26 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.398 -7.781 0.000 19.976
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.623 5.623
2 C -0.242 4.242
3 Si 0.785 3.215
4 H -0.193 1.193
5 H -0.206 1.206
6 H -0.176 1.176
7 C -0.364 4.364
8 H 0.073 0.927
9 N -0.321 5.321
10 O -0.197 6.197
11 C -0.001 4.001
12 C -0.106 4.106
13 C -0.133 4.133
14 C -0.145 4.145
15 C -0.133 4.133
16 C -0.145 4.145
17 C -0.133 4.133
18 H 0.077 0.923
19 H 0.227 0.773
20 H 0.082 0.918
21 H 0.083 0.917
22 H 0.143 0.857
23 H 0.167 0.833
24 H 0.172 0.828
25 H 0.167 0.833
26 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges 18.112 -8.075 0.002 19.831
hybrid contribution 0.081 1.146 0.016 1.149
sum 18.193 -6.929 0.017 19.468
Atomic orbital electron populations
1.69829 1.06821 1.27568 1.58128 1.25223 0.96245 1.00990 1.01762
0.85362 0.78533 0.78677 0.78889 1.19281 1.20585 1.17619 1.18685
0.79351 0.94535 1.43868 0.92748 1.43837 1.00048 0.93473 1.94761
1.90247 1.16814 1.15084 1.97562 1.21661 0.81230 0.95638 1.01600
1.19604 1.00418 0.95629 0.94989 1.21310 0.98365 0.96279 0.97338
1.21486 0.98672 0.94452 0.99843 1.21611 0.98884 1.00802 0.91959
1.21484 0.98694 0.94431 0.99855 1.21306 0.98423 0.96270 0.97330
0.92289 0.77315 0.91848 0.91685 0.85659 0.83291 0.82778 0.83314
0.85727
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 35.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -62.59 13.97 21.65 0.30 -62.29 15
2 C -0.05 -2.97 5.50 84.86 0.47 -2.50 15
3 Si 0.96 44.38 27.74 68.60 1.90 46.28 15
4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15
5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15
6 H -0.25 -10.43 6.52 99.48 0.65 -9.78 15
7 C -0.24 -14.52 10.89 84.03 0.92 -13.60 15
8 H 0.05 3.74 8.06 -2.91 -0.02 3.71 15
9 N -0.62 -32.73 6.25 -54.27 -0.34 -33.07 15
10 O -0.19 -9.34 11.41 -38.78 -0.44 -9.78 15
11 C 0.08 2.70 6.35 71.24 0.45 3.16 15
12 C -0.11 -3.27 5.51 -19.86 -0.11 -3.37 15
13 C -0.11 -3.14 9.70 22.27 0.22 -2.92 15
14 C -0.13 -2.72 10.05 22.27 0.22 -2.50 15
15 C -0.11 -2.21 10.05 22.27 0.22 -1.99 15
16 C -0.13 -2.73 10.05 22.27 0.22 -2.51 15
17 C -0.12 -3.16 9.70 22.27 0.22 -2.94 15
18 H 0.27 16.04 8.31 -92.71 -0.77 15.27 15
19 H 0.39 18.19 5.60 -92.71 -0.52 17.67 15
20 H 0.06 2.09 8.08 -2.38 -0.02 2.07 15
21 H 0.06 2.13 8.09 -2.39 -0.02 2.11 15
22 H 0.13 3.25 8.06 -2.91 -0.02 3.23 15
23 H 0.15 2.31 8.06 -2.91 -0.02 2.29 15
24 H 0.15 1.90 8.06 -2.91 -0.02 1.87 15
25 H 0.15 2.32 8.06 -2.91 -0.02 2.29 15
26 H 0.12 3.26 8.06 -2.91 -0.02 3.23 15
Total: -1.00 -72.10 236.32 4.85 -67.26
By element:
Atomic # 1 Polarization: 20.21 SS G_CDS: 0.59 Total: 20.80 kcal
Atomic # 6 Polarization: -32.02 SS G_CDS: 2.83 Total: -29.19 kcal
Atomic # 7 Polarization: -95.33 SS G_CDS: -0.04 Total: -95.36 kcal
Atomic # 8 Polarization: -9.34 SS G_CDS: -0.44 Total: -9.78 kcal
Atomic # 14 Polarization: 44.38 SS G_CDS: 1.90 Total: 46.28 kcal
Total: -72.10 4.85 -67.26 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000060206580.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.183 kcal
(2) G-P(sol) polarization free energy of solvation -72.101 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.081 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.256 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.927 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds