Wall clock time and date at job start Mon Mar 30 2020 01:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00126 * 2 1 4 4 H 1.48502 * 109.47038 * 269.99662 * 3 2 1 5 5 H 1.48501 * 109.47038 * 29.99881 * 3 2 1 6 6 H 1.48496 * 109.47143 * 149.99412 * 3 2 1 7 7 C 1.38812 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00114 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00153 * 180.02562 * 7 2 1 10 10 O 1.41600 * 120.00442 * 180.02562 * 9 7 2 11 11 C 1.42893 * 113.99989 * 180.02562 * 10 9 7 12 12 C 1.50707 * 109.47070 * 179.97438 * 11 10 9 13 13 C 1.38238 * 119.99792 * 89.99993 * 12 11 10 14 14 C 1.38235 * 119.99712 * 179.97438 * 13 12 11 15 15 C 1.38234 * 120.00220 * 359.97124 * 14 13 12 16 16 C 1.38233 * 120.00037 * 0.28719 * 15 14 13 17 17 C 1.38234 * 120.00179 * 269.97930 * 12 11 10 18 18 H 0.96997 * 120.00028 * 0.02562 * 1 2 3 19 19 H 0.97001 * 119.99776 * 0.02562 * 9 7 2 20 20 H 1.09005 * 109.47744 * 60.00324 * 11 10 9 21 21 H 1.09000 * 109.47353 * 299.99523 * 11 10 9 22 22 H 1.08005 * 120.00068 * 359.97438 * 13 12 11 23 23 H 1.07999 * 119.99770 * 179.97438 * 14 13 12 24 24 H 1.08002 * 119.99744 * 180.02562 * 15 14 13 25 25 H 1.07998 * 120.00395 * 179.72811 * 16 15 14 26 26 H 1.07999 * 119.99968 * 359.97438 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 8 4.0876 -2.4285 0.0011 11 6 5.5087 -2.2791 0.0022 12 6 6.1569 -3.6397 0.0028 13 6 6.4551 -4.2636 -1.1942 14 6 7.0501 -5.5114 -1.1937 15 6 7.3474 -6.1349 0.0037 16 6 7.0443 -5.5133 1.2006 17 6 6.4536 -4.2635 1.2001 18 1 -0.4850 0.8400 -0.0004 19 1 3.8646 -0.3622 0.0014 20 1 5.8158 -1.7305 0.8927 21 1 5.8171 -1.7298 -0.8873 22 1 6.2232 -3.7762 -2.1297 23 1 7.2827 -5.9990 -2.1288 24 1 7.8127 -7.1095 0.0040 25 1 7.2726 -6.0023 2.1361 26 1 6.2212 -3.7757 2.1353 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060206580.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:46 Heat of formation + Delta-G solvation = 25.926540 kcal Electronic energy + Delta-G solvation = -11180.267263 eV Core-core repulsion = 9032.831989 eV Total energy + Delta-G solvation = -2147.435274 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.23315 -38.12038 -35.12867 -33.09247 -31.82545 -31.40284 -26.95668 -25.00926 -23.50118 -22.32032 -20.07103 -18.37158 -17.73061 -16.62360 -16.59011 -16.06301 -15.07246 -15.05145 -14.42719 -14.28006 -14.27022 -13.61782 -13.25638 -13.04493 -12.29656 -12.19652 -11.95519 -11.88808 -11.84251 -10.89791 -9.85295 -9.80666 -9.36003 -8.11892 -5.50248 0.27983 0.47099 1.33168 1.40460 1.44847 2.02602 2.39568 2.90071 3.18162 3.83212 3.86414 4.11012 4.27508 4.28501 4.32461 4.55420 4.64560 4.72685 5.02675 5.13084 5.52054 5.56920 5.65052 5.77651 6.02764 6.07194 6.99304 7.66966 7.84584 9.08516 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.077594 B = 0.007214 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.764701 B = 3880.313737 C = 3936.591436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.050 4.050 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.251 1.251 7 C -0.236 4.236 8 H 0.054 0.946 9 N -0.622 5.622 10 O -0.193 6.193 11 C 0.076 3.924 12 C -0.105 4.105 13 C -0.115 4.115 14 C -0.127 4.127 15 C -0.115 4.115 16 C -0.127 4.127 17 C -0.115 4.115 18 H 0.268 0.732 19 H 0.386 0.614 20 H 0.063 0.937 21 H 0.065 0.935 22 H 0.125 0.875 23 H 0.149 0.851 24 H 0.155 0.845 25 H 0.149 0.851 26 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.398 -7.781 0.000 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.242 4.242 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.364 4.364 8 H 0.073 0.927 9 N -0.321 5.321 10 O -0.197 6.197 11 C -0.001 4.001 12 C -0.106 4.106 13 C -0.133 4.133 14 C -0.145 4.145 15 C -0.133 4.133 16 C -0.145 4.145 17 C -0.133 4.133 18 H 0.077 0.923 19 H 0.227 0.773 20 H 0.082 0.918 21 H 0.083 0.917 22 H 0.143 0.857 23 H 0.167 0.833 24 H 0.172 0.828 25 H 0.167 0.833 26 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 18.112 -8.075 0.002 19.831 hybrid contribution 0.081 1.146 0.016 1.149 sum 18.193 -6.929 0.017 19.468 Atomic orbital electron populations 1.69829 1.06821 1.27568 1.58128 1.25223 0.96245 1.00990 1.01762 0.85362 0.78533 0.78677 0.78889 1.19281 1.20585 1.17619 1.18685 0.79351 0.94535 1.43868 0.92748 1.43837 1.00048 0.93473 1.94761 1.90247 1.16814 1.15084 1.97562 1.21661 0.81230 0.95638 1.01600 1.19604 1.00418 0.95629 0.94989 1.21310 0.98365 0.96279 0.97338 1.21486 0.98672 0.94452 0.99843 1.21611 0.98884 1.00802 0.91959 1.21484 0.98694 0.94431 0.99855 1.21306 0.98423 0.96270 0.97330 0.92289 0.77315 0.91848 0.91685 0.85659 0.83291 0.82778 0.83314 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.59 13.97 21.65 0.30 -62.29 15 2 C -0.05 -2.97 5.50 84.86 0.47 -2.50 15 3 Si 0.96 44.38 27.74 68.60 1.90 46.28 15 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 6 H -0.25 -10.43 6.52 99.48 0.65 -9.78 15 7 C -0.24 -14.52 10.89 84.03 0.92 -13.60 15 8 H 0.05 3.74 8.06 -2.91 -0.02 3.71 15 9 N -0.62 -32.73 6.25 -54.27 -0.34 -33.07 15 10 O -0.19 -9.34 11.41 -38.78 -0.44 -9.78 15 11 C 0.08 2.70 6.35 71.24 0.45 3.16 15 12 C -0.11 -3.27 5.51 -19.86 -0.11 -3.37 15 13 C -0.11 -3.14 9.70 22.27 0.22 -2.92 15 14 C -0.13 -2.72 10.05 22.27 0.22 -2.50 15 15 C -0.11 -2.21 10.05 22.27 0.22 -1.99 15 16 C -0.13 -2.73 10.05 22.27 0.22 -2.51 15 17 C -0.12 -3.16 9.70 22.27 0.22 -2.94 15 18 H 0.27 16.04 8.31 -92.71 -0.77 15.27 15 19 H 0.39 18.19 5.60 -92.71 -0.52 17.67 15 20 H 0.06 2.09 8.08 -2.38 -0.02 2.07 15 21 H 0.06 2.13 8.09 -2.39 -0.02 2.11 15 22 H 0.13 3.25 8.06 -2.91 -0.02 3.23 15 23 H 0.15 2.31 8.06 -2.91 -0.02 2.29 15 24 H 0.15 1.90 8.06 -2.91 -0.02 1.87 15 25 H 0.15 2.32 8.06 -2.91 -0.02 2.29 15 26 H 0.12 3.26 8.06 -2.91 -0.02 3.23 15 Total: -1.00 -72.10 236.32 4.85 -67.26 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.59 Total: 20.80 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 2.83 Total: -29.19 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -0.04 Total: -95.36 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.44 Total: -9.78 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.90 Total: 46.28 kcal Total: -72.10 4.85 -67.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060206580.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.183 kcal (2) G-P(sol) polarization free energy of solvation -72.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds