Wall clock time and date at job start Mon Mar 30 2020 02:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 119.99773 * 2 1 4 4 H 1.48501 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47034 * 300.00651 * 3 2 1 6 6 H 1.48500 * 109.46965 * 60.00514 * 3 2 1 7 7 C 1.38807 * 120.00479 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00501 * 164.49161 * 7 2 1 9 9 N 1.36936 * 119.99939 * 344.49735 * 7 2 1 10 10 C 1.47083 * 120.97774 * 155.81501 * 9 7 2 11 11 C 1.53277 * 109.15943 * 116.11090 * 10 9 7 12 12 N 1.46432 * 109.23888 * 45.78708 * 11 10 9 13 13 C 1.36407 * 127.54937 * 161.54290 * 12 11 10 14 14 C 1.34844 * 106.73986 * 179.54902 * 13 12 11 15 15 N 1.34300 * 108.07337 * 0.08511 * 14 13 12 16 16 C 1.29988 * 109.16248 * 0.14647 * 15 14 13 17 17 C 1.47455 * 120.97340 * 335.52850 * 9 7 2 18 18 H 0.97002 * 120.00555 * 359.97438 * 1 2 3 19 19 H 1.09011 * 109.52146 * 236.01286 * 10 9 7 20 20 H 1.09001 * 109.52545 * 356.13608 * 10 9 7 21 21 H 1.09004 * 109.50732 * 165.71405 * 11 10 9 22 22 H 1.09001 * 109.50951 * 285.85806 * 11 10 9 23 23 H 1.08007 * 126.62672 * 359.53393 * 13 12 11 24 24 H 1.07999 * 125.96007 * 180.02562 * 14 13 12 25 25 H 1.09004 * 109.93933 * 342.87030 * 17 9 7 26 26 H 1.09005 * 109.93896 * 104.10224 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8912 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0608 -1.2190 -0.2506 9 7 1.3631 -2.3666 0.3159 10 6 1.8638 -3.6647 -0.1610 11 6 2.2810 -4.5162 1.0433 12 7 1.2396 -4.4427 2.0701 13 6 1.0431 -5.2944 3.1173 14 6 -0.0221 -4.8298 3.8013 15 7 -0.4637 -3.7225 3.1827 16 6 0.2826 -3.4871 2.1448 17 6 0.1471 -2.3564 1.1500 18 1 -0.4851 0.8400 0.0004 19 1 1.0772 -4.1775 -0.7147 20 1 2.7237 -3.5066 -0.8120 21 1 2.4103 -5.5520 0.7294 22 1 3.2194 -4.1381 1.4489 23 1 1.6276 -6.1716 3.3529 24 1 -0.4466 -5.2716 4.6906 25 1 0.0656 -1.4056 1.6768 26 1 -0.7329 -2.5135 0.5262 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060394343.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:15 Heat of formation + Delta-G solvation = 69.755445 kcal Electronic energy + Delta-G solvation = -12089.916072 eV Core-core repulsion = 9976.674113 eV Total energy + Delta-G solvation = -2113.241959 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.99555 -37.96814 -35.13312 -33.17836 -31.02703 -29.93704 -27.37256 -25.23021 -23.33547 -22.14495 -20.08996 -18.59552 -18.05014 -16.88982 -16.53216 -15.59788 -15.44988 -14.91777 -14.66915 -14.38559 -13.86237 -13.27953 -13.07853 -12.77771 -12.60468 -12.28981 -12.13463 -11.88399 -10.90183 -10.74336 -10.44914 -9.14967 -8.96159 -7.97897 -5.43774 1.23529 1.46803 1.49530 1.59243 2.02491 2.26903 2.46217 3.17730 3.39489 3.79255 3.91782 4.10168 4.28363 4.38743 4.62689 4.80149 4.81130 4.90530 5.09256 5.29746 5.52506 5.60503 5.97397 6.21418 6.35870 6.95181 7.30383 7.66017 8.17857 9.12691 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.056248 B = 0.012038 C = 0.010899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.678142 B = 2325.413198 C = 2568.412806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.049 4.049 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.294 1.294 7 C -0.270 4.270 8 H 0.085 0.915 9 N -0.614 5.614 10 C 0.124 3.876 11 C 0.088 3.912 12 N -0.450 5.450 13 C -0.053 4.053 14 C -0.065 4.065 15 N -0.538 5.538 16 C 0.176 3.824 17 C 0.271 3.729 18 H 0.254 0.746 19 H 0.035 0.965 20 H 0.100 0.900 21 H 0.125 0.875 22 H 0.085 0.915 23 H 0.217 0.783 24 H 0.192 0.808 25 H 0.069 0.931 26 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 -10.057 2.374 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.245 4.245 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.221 1.221 7 C -0.399 4.399 8 H 0.103 0.897 9 N -0.337 5.337 10 C -0.002 4.002 11 C -0.035 4.035 12 N -0.132 5.132 13 C -0.187 4.187 14 C -0.212 4.212 15 N -0.259 5.259 16 C -0.089 4.089 17 C 0.144 3.856 18 H 0.063 0.937 19 H 0.053 0.947 20 H 0.118 0.882 21 H 0.143 0.857 22 H 0.104 0.896 23 H 0.234 0.766 24 H 0.209 0.791 25 H 0.087 0.913 26 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 5.408 -9.461 2.460 11.171 hybrid contribution 0.543 0.594 -0.167 0.822 sum 5.950 -8.866 2.292 10.921 Atomic orbital electron populations 1.70142 1.06849 1.26372 1.54890 1.25890 0.96150 1.01919 1.00560 0.85113 0.78705 0.79309 0.76714 1.18504 1.21523 1.22146 1.19600 0.93020 0.84913 1.42363 0.89744 1.44380 1.29482 1.02931 1.56941 1.21443 0.99471 0.85547 0.93748 1.22737 0.89151 1.03447 0.88193 1.45571 1.24309 1.20650 1.22704 1.23240 1.03364 1.00248 0.91854 1.22889 0.98950 0.95694 1.03715 1.69961 1.29396 1.18585 1.07940 1.24514 0.90076 0.95873 0.98396 1.18937 0.88653 0.91006 0.87037 0.93697 0.94676 0.88190 0.85661 0.89637 0.76648 0.79108 0.91319 0.95607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.54 11.08 21.65 0.24 -55.30 15 2 C -0.05 -2.73 5.00 84.86 0.42 -2.30 15 3 Si 0.97 44.19 29.58 68.60 2.03 46.22 15 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 15 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 15 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 15 7 C -0.27 -14.33 9.66 84.03 0.81 -13.52 15 8 H 0.08 4.20 7.88 -2.91 -0.02 4.17 15 9 N -0.61 -30.42 3.01 -700.89 -2.11 -32.53 15 10 C 0.12 4.58 6.50 86.36 0.56 5.14 15 11 C 0.09 2.62 7.15 86.48 0.62 3.24 15 12 N -0.45 -16.59 3.13 -513.65 -1.61 -18.20 15 13 C -0.05 -1.62 11.63 83.20 0.97 -0.65 15 14 C -0.07 -2.29 11.87 83.54 0.99 -1.29 15 15 N -0.54 -24.64 11.24 -187.39 -2.11 -26.75 15 16 C 0.18 8.16 7.78 138.31 1.08 9.24 15 17 C 0.27 14.29 5.38 85.61 0.46 14.75 15 18 H 0.25 14.56 8.31 -92.71 -0.77 13.79 15 19 H 0.04 1.31 8.14 -2.38 -0.02 1.29 15 20 H 0.10 3.28 7.94 -2.39 -0.02 3.26 15 21 H 0.13 2.57 8.14 -2.38 -0.02 2.55 15 22 H 0.09 2.44 8.14 -2.39 -0.02 2.42 15 23 H 0.22 4.12 8.06 -2.91 -0.02 4.10 15 24 H 0.19 5.19 8.06 -2.91 -0.02 5.16 15 25 H 0.07 4.10 6.45 -2.39 -0.02 4.09 15 26 H 0.03 1.48 8.14 -2.38 -0.02 1.46 15 Total: -1.00 -68.71 223.60 3.52 -65.18 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 1.17 Total: 6.76 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 5.91 Total: 14.61 kcal Atomic # 7 Polarization: -127.19 SS G_CDS: -5.58 Total: -132.77 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -68.71 3.52 -65.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060394343.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.937 kcal (2) G-P(sol) polarization free energy of solvation -68.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds