Wall clock time and date at job start Mon Mar 30 2020 02:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39678 * 119.99824 * 2 1 4 4 C 1.39004 * 120.03795 * 359.97438 * 3 2 1 5 5 C 1.38148 * 120.05687 * 179.97438 * 4 3 2 6 6 C 1.38172 * 120.14824 * 0.04704 * 5 4 3 7 7 C 1.38918 * 120.07741 * 359.96845 * 6 5 4 8 8 O 1.35745 * 120.03251 * 179.97438 * 7 6 5 9 9 C 1.34834 * 116.99917 * 174.48470 * 8 7 6 10 10 H 1.07996 * 120.00172 * 5.04345 * 9 8 7 11 11 C 1.38655 * 119.99896 * 185.05339 * 9 8 7 12 12 N 1.31560 * 119.99998 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99953 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47111 * 89.99762 * 13 11 9 15 15 H 1.48500 * 109.47020 * 209.99643 * 13 11 9 16 16 H 1.48495 * 109.47055 * 329.99324 * 13 11 9 17 17 C 1.38750 * 120.03487 * 180.02562 * 3 2 1 18 18 H 1.08998 * 109.46858 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.46767 * 299.99844 * 1 2 3 20 20 H 1.08996 * 109.47116 * 59.99349 * 1 2 3 21 21 H 0.97000 * 119.99891 * 180.02562 * 2 1 3 22 22 H 1.07996 * 119.97142 * 359.97438 * 4 3 2 23 23 H 1.08002 * 119.92904 * 180.02562 * 5 4 3 24 24 H 1.08001 * 119.96097 * 180.02562 * 6 5 4 25 25 H 0.96994 * 120.00074 * 179.97438 * 12 11 9 26 26 H 1.07991 * 120.07491 * 0.27605 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 1.4691 2.4139 -0.0005 5 6 2.1594 3.6106 0.0000 6 6 3.5412 3.6146 0.0001 7 6 4.2409 2.4146 0.0003 8 8 5.5983 2.4196 -0.0001 9 6 6.2150 1.2262 0.1156 10 1 5.6334 0.3162 0.1211 11 6 7.5957 1.1672 0.2276 12 7 8.3042 2.2757 0.2205 13 14 8.4499 -0.4863 0.3886 14 1 8.7859 -1.0034 -0.9622 15 1 9.6956 -0.3248 1.1808 16 1 7.5474 -1.4448 1.0754 17 6 3.5509 1.2106 -0.0005 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 1.9500 -0.8401 -0.0004 22 1 0.3892 2.4141 -0.0014 23 1 1.6179 4.5450 0.0000 24 1 4.0778 4.5519 0.0009 25 1 9.2701 2.2345 0.2993 26 1 4.0927 0.2764 -0.0055 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062796829.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:54 Heat of formation + Delta-G solvation = -0.361959 kcal Electronic energy + Delta-G solvation = -11482.796508 eV Core-core repulsion = 9334.221279 eV Total energy + Delta-G solvation = -2148.575229 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.98195 -36.93997 -34.40057 -32.14627 -29.57630 -28.32266 -25.40791 -25.16461 -21.68478 -20.49116 -17.83865 -17.37411 -15.75333 -15.00655 -14.55273 -14.10584 -13.98552 -13.68615 -13.33775 -12.86630 -12.35192 -11.85924 -11.60062 -11.38582 -10.93207 -10.74943 -10.55639 -10.36279 -9.39286 -9.33859 -8.72817 -7.31342 -6.74057 -6.37915 -3.97127 2.41926 2.61068 3.16222 3.17131 3.21594 3.94471 4.02722 4.74449 5.18508 5.30156 5.41218 5.64732 5.72792 5.82612 6.04085 6.31410 6.40237 6.67388 6.69631 7.08328 7.19066 7.42690 7.52750 7.70519 8.06721 8.08594 8.24420 9.08230 9.81228 10.80571 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.046499 B = 0.010195 C = 0.008405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.016122 B = 2745.805915 C = 3330.605492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.761 5.761 3 C 0.245 3.755 4 C -0.280 4.280 5 C -0.041 4.041 6 C -0.236 4.236 7 C 0.189 3.811 8 O -0.179 6.179 9 C -0.389 4.389 10 H 0.091 0.909 11 C 0.038 3.962 12 N -0.865 5.865 13 Si 0.940 3.060 14 H -0.274 1.274 15 H -0.278 1.278 16 H -0.269 1.269 17 C -0.303 4.303 18 H 0.063 0.937 19 H 0.046 0.954 20 H 0.046 0.954 21 H 0.395 0.605 22 H 0.104 0.896 23 H 0.110 0.890 24 H 0.113 0.887 25 H 0.269 0.731 26 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.574 -4.075 -0.104 11.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.393 5.393 3 C 0.144 3.856 4 C -0.302 4.302 5 C -0.060 4.060 6 C -0.257 4.257 7 C 0.134 3.866 8 O -0.082 6.082 9 C -0.466 4.466 10 H 0.108 0.892 11 C -0.166 4.166 12 N -0.500 5.500 13 Si 0.765 3.235 14 H -0.200 1.200 15 H -0.203 1.203 16 H -0.193 1.193 17 C -0.327 4.327 18 H 0.082 0.918 19 H 0.064 0.936 20 H 0.064 0.936 21 H 0.228 0.772 22 H 0.122 0.878 23 H 0.128 0.872 24 H 0.131 0.869 25 H 0.079 0.921 26 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.359 -3.777 -0.103 11.027 hybrid contribution 0.538 -1.242 0.076 1.355 sum -9.821 -5.018 -0.027 11.029 Atomic orbital electron populations 1.21368 0.81241 1.01156 1.00623 1.44372 1.04965 1.05667 1.84256 1.17521 0.90537 0.85520 0.92033 1.20089 0.98057 0.91287 1.20802 1.20383 0.93046 0.96498 0.96034 1.20045 0.93347 0.96041 1.16271 1.19078 0.84549 0.92680 0.90272 1.83985 1.12834 1.32851 1.78534 1.21303 0.90046 0.83263 1.51948 0.89212 1.25272 0.95457 0.99126 0.96729 1.70042 1.06788 1.26760 1.46457 0.85728 0.78906 0.80287 0.78565 1.19973 1.20308 1.19332 1.20521 0.91900 0.98857 1.21387 0.91797 0.93558 0.93571 0.77171 0.87813 0.87166 0.86874 0.92139 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.20 9.94 59.85 0.59 1.80 15 2 N -0.76 -11.91 5.89 -65.41 -0.39 -12.30 15 3 C 0.25 4.83 6.65 -83.81 -0.56 4.27 15 4 C -0.28 -5.22 9.31 -39.33 -0.37 -5.59 15 5 C -0.04 -0.78 10.03 -39.64 -0.40 -1.17 15 6 C -0.24 -5.30 9.99 -39.35 -0.39 -5.70 15 7 C 0.19 4.80 6.64 -39.13 -0.26 4.54 15 8 O -0.18 -5.29 9.76 0.06 0.00 -5.29 15 9 C -0.39 -11.18 9.49 30.89 0.29 -10.89 15 10 H 0.09 2.40 5.20 -52.49 -0.27 2.12 15 11 C 0.04 1.06 5.49 -17.51 -0.10 0.97 15 12 N -0.87 -25.89 13.67 55.48 0.76 -25.13 15 13 Si 0.94 20.91 29.55 -169.99 -5.02 15.88 15 14 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 15 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 17 C -0.30 -6.94 9.01 -39.19 -0.35 -7.30 15 18 H 0.06 0.58 8.14 -51.93 -0.42 0.15 15 19 H 0.05 0.54 7.95 -51.93 -0.41 0.13 15 20 H 0.05 0.54 7.95 -51.93 -0.41 0.12 15 21 H 0.40 5.62 8.84 -40.82 -0.36 5.26 15 22 H 0.10 1.66 6.72 -52.49 -0.35 1.31 15 23 H 0.11 1.72 8.06 -52.49 -0.42 1.30 15 24 H 0.11 2.45 8.06 -52.49 -0.42 2.03 15 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 26 H 0.12 2.84 5.64 -52.49 -0.30 2.54 15 LS Contribution 231.61 15.07 3.49 3.49 Total: -1.00 -31.72 231.61 -5.21 -36.93 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -2.51 Total: 5.48 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -1.54 Total: -19.07 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.37 Total: -37.42 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: 0.00 Total: -5.29 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -31.72 -5.21 -36.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062796829.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.568 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds