Wall clock time and date at job start Mon Mar 30 2020 02:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39678 * 119.99824 * 2 1 4 4 C 1.39004 * 120.03795 * 359.97438 * 3 2 1 5 5 C 1.38148 * 120.05687 * 179.97438 * 4 3 2 6 6 C 1.38172 * 120.14824 * 0.04704 * 5 4 3 7 7 C 1.38918 * 120.07741 * 359.96845 * 6 5 4 8 8 O 1.35745 * 120.03251 * 179.97438 * 7 6 5 9 9 C 1.34834 * 116.99917 * 174.48470 * 8 7 6 10 10 H 1.07996 * 120.00172 * 5.04345 * 9 8 7 11 11 C 1.38655 * 119.99896 * 185.05339 * 9 8 7 12 12 N 1.31560 * 119.99998 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99953 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47111 * 89.99762 * 13 11 9 15 15 H 1.48500 * 109.47020 * 209.99643 * 13 11 9 16 16 H 1.48495 * 109.47055 * 329.99324 * 13 11 9 17 17 C 1.38750 * 120.03487 * 180.02562 * 3 2 1 18 18 H 1.08998 * 109.46858 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.46767 * 299.99844 * 1 2 3 20 20 H 1.08996 * 109.47116 * 59.99349 * 1 2 3 21 21 H 0.97000 * 119.99891 * 180.02562 * 2 1 3 22 22 H 1.07996 * 119.97142 * 359.97438 * 4 3 2 23 23 H 1.08002 * 119.92904 * 180.02562 * 5 4 3 24 24 H 1.08001 * 119.96097 * 180.02562 * 6 5 4 25 25 H 0.96994 * 120.00074 * 179.97438 * 12 11 9 26 26 H 1.07991 * 120.07491 * 0.27605 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 1.4691 2.4139 -0.0005 5 6 2.1594 3.6106 0.0000 6 6 3.5412 3.6146 0.0001 7 6 4.2409 2.4146 0.0003 8 8 5.5983 2.4196 -0.0001 9 6 6.2150 1.2262 0.1156 10 1 5.6334 0.3162 0.1211 11 6 7.5957 1.1672 0.2276 12 7 8.3042 2.2757 0.2205 13 14 8.4499 -0.4863 0.3886 14 1 8.7859 -1.0034 -0.9622 15 1 9.6956 -0.3248 1.1808 16 1 7.5474 -1.4448 1.0754 17 6 3.5509 1.2106 -0.0005 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 1.9500 -0.8401 -0.0004 22 1 0.3892 2.4141 -0.0014 23 1 1.6179 4.5450 0.0000 24 1 4.0778 4.5519 0.0009 25 1 9.2701 2.2345 0.2993 26 1 4.0927 0.2764 -0.0055 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062796829.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:54 Heat of formation + Delta-G solvation = -22.802678 kcal Electronic energy + Delta-G solvation = -11483.769611 eV Core-core repulsion = 9334.221279 eV Total energy + Delta-G solvation = -2149.548331 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.74225 -38.67042 -35.88067 -34.19077 -31.14398 -29.99023 -27.28872 -26.54230 -23.39026 -22.14078 -19.77252 -19.05537 -17.35431 -16.73446 -16.17308 -15.76390 -15.56398 -15.38143 -14.83226 -14.46613 -14.07805 -13.48669 -13.00978 -12.92098 -12.57579 -12.47088 -12.17036 -12.02658 -11.29566 -10.96807 -10.61839 -9.10863 -8.45121 -8.23902 -6.13806 0.75673 0.91390 1.34707 1.45313 1.52767 2.19174 2.68597 2.89473 3.26533 3.59472 4.20389 4.41345 4.45675 4.61409 4.74687 4.75179 4.96205 5.06518 5.13627 5.16564 5.46922 5.75139 5.80193 6.03909 6.11383 6.60452 6.89169 7.00019 7.83029 8.78585 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.046499 B = 0.010195 C = 0.008405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.016122 B = 2745.805915 C = 3330.605492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.755 5.755 3 C 0.249 3.751 4 C -0.266 4.266 5 C -0.027 4.027 6 C -0.262 4.262 7 C 0.150 3.850 8 O -0.233 6.233 9 C -0.413 4.413 10 H 0.099 0.901 11 C -0.024 4.024 12 N -0.922 5.922 13 Si 1.021 2.979 14 H -0.263 1.263 15 H -0.270 1.270 16 H -0.254 1.254 17 C -0.319 4.319 18 H 0.096 0.904 19 H 0.054 0.946 20 H 0.054 0.946 21 H 0.401 0.599 22 H 0.144 0.856 23 H 0.154 0.846 24 H 0.107 0.893 25 H 0.272 0.728 26 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.366 -5.555 -0.021 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.385 5.385 3 C 0.144 3.856 4 C -0.288 4.288 5 C -0.045 4.045 6 C -0.283 4.283 7 C 0.099 3.901 8 O -0.139 6.139 9 C -0.489 4.489 10 H 0.116 0.884 11 C -0.221 4.221 12 N -0.561 5.561 13 Si 0.840 3.160 14 H -0.188 1.188 15 H -0.195 1.195 16 H -0.178 1.178 17 C -0.343 4.343 18 H 0.114 0.886 19 H 0.072 0.928 20 H 0.073 0.927 21 H 0.235 0.765 22 H 0.161 0.839 23 H 0.171 0.829 24 H 0.126 0.874 25 H 0.081 0.919 26 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.241 -5.285 -0.024 14.257 hybrid contribution 1.033 -0.746 0.036 1.275 sum -12.208 -6.031 0.012 13.616 Atomic orbital electron populations 1.21681 0.78345 1.03753 1.01278 1.44585 1.06783 1.04536 1.82552 1.17661 0.89515 0.87771 0.90630 1.20596 1.00006 0.90387 1.17857 1.20854 0.91509 0.98793 0.93366 1.20284 0.95088 0.94987 1.17948 1.19669 0.83696 0.94848 0.91869 1.83946 1.15087 1.33526 1.81326 1.21806 0.90906 0.83716 1.52472 0.88368 1.26613 0.95822 1.03776 0.95933 1.70192 1.07235 1.29714 1.48922 0.84567 0.77598 0.74747 0.79128 1.18757 1.19498 1.17773 1.20554 0.93639 0.97603 1.22534 0.88558 0.92770 0.92743 0.76481 0.83851 0.82864 0.87444 0.91862 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.74 9.94 127.77 1.27 3.01 15 2 N -0.75 -21.06 5.89 -360.86 -2.13 -23.19 15 3 C 0.25 9.21 6.65 38.20 0.25 9.47 15 4 C -0.27 -8.88 9.31 22.43 0.21 -8.67 15 5 C -0.03 -0.95 10.03 22.23 0.22 -0.72 15 6 C -0.26 -11.92 9.99 22.42 0.22 -11.69 15 7 C 0.15 7.95 6.64 22.56 0.15 8.10 15 8 O -0.23 -14.63 9.76 -22.72 -0.22 -14.85 15 9 C -0.41 -24.91 9.49 67.92 0.64 -24.27 15 10 H 0.10 5.48 5.20 -2.91 -0.02 5.46 15 11 C -0.02 -1.42 5.49 84.83 0.47 -0.96 15 12 N -0.92 -57.95 13.67 21.61 0.30 -57.65 15 13 Si 1.02 43.79 29.55 68.60 2.03 45.81 15 14 H -0.26 -10.67 7.11 99.48 0.71 -9.96 15 15 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 16 H -0.25 -10.12 7.11 99.48 0.71 -9.41 15 17 C -0.32 -14.81 9.01 22.52 0.20 -14.60 15 18 H 0.10 1.23 8.14 -2.39 -0.02 1.21 15 19 H 0.05 0.98 7.95 -2.39 -0.02 0.96 15 20 H 0.05 0.98 7.95 -2.39 -0.02 0.96 15 21 H 0.40 10.32 8.84 -92.71 -0.82 9.50 15 22 H 0.14 3.71 6.72 -2.91 -0.02 3.69 15 23 H 0.15 4.09 8.06 -2.91 -0.02 4.06 15 24 H 0.11 4.85 8.06 -2.91 -0.02 4.83 15 25 H 0.27 15.62 8.31 -92.71 -0.77 14.85 15 26 H 0.11 5.36 5.64 -2.92 -0.02 5.34 15 Total: -1.00 -73.13 231.61 3.99 -69.14 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.38 Total: 21.07 kcal Atomic # 6 Polarization: -43.97 SS G_CDS: 3.64 Total: -40.33 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -1.83 Total: -80.84 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.22 Total: -14.85 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -73.13 3.99 -69.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062796829.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.338 kcal (2) G-P(sol) polarization free energy of solvation -73.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds