Wall clock time and date at job start Mon Mar 30 2020 01:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35495 * 117.00297 * 2 1 4 4 C 1.39431 * 119.41069 * 180.02562 * 3 2 1 5 5 C 1.36678 * 119.51097 * 180.02562 * 4 3 2 6 6 C 1.41261 * 118.38198 * 359.93681 * 5 4 3 7 7 C 1.41270 * 120.59044 * 180.29581 * 6 5 4 8 8 H 1.08000 * 120.00140 * 154.63255 * 7 6 5 9 9 C 1.39892 * 120.00194 * 334.63247 * 7 6 5 10 10 N 1.30882 * 119.99598 * 344.17492 * 9 7 6 11 11 Si 1.86798 * 120.00091 * 164.17372 * 9 7 6 12 12 H 1.48493 * 109.47298 * 60.00181 * 11 9 7 13 13 H 1.48506 * 109.46770 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47014 * 299.99752 * 11 9 7 15 15 C 1.40727 * 118.81576 * 0.02562 * 6 5 4 16 16 C 1.50699 * 119.82359 * 179.97438 * 15 6 5 17 17 N 1.31513 * 120.34859 * 0.02562 * 15 6 5 18 18 H 1.08994 * 109.47588 * 300.00219 * 1 2 3 19 19 H 1.09005 * 109.46702 * 59.99992 * 1 2 3 20 20 H 1.08994 * 109.46941 * 179.97438 * 1 2 3 21 21 H 1.07999 * 120.24142 * 359.97438 * 4 3 2 22 22 H 1.07995 * 120.80958 * 179.97438 * 5 4 3 23 23 H 0.97002 * 119.99579 * 179.97438 * 10 9 7 24 24 H 1.09010 * 109.47132 * 90.00552 * 16 15 6 25 25 H 1.08998 * 109.47263 * 209.99870 * 16 15 6 26 26 H 1.08999 * 109.47727 * 330.00349 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 3.4372 1.2658 -0.0005 5 6 4.0599 2.4825 0.0000 6 6 3.2595 3.6465 -0.0003 7 6 3.8542 4.9279 -0.0060 8 1 3.3135 5.7724 -0.4071 9 6 5.1435 5.1030 0.5077 10 7 5.6777 4.1780 1.2640 11 14 6.1026 6.6570 0.1144 12 1 5.3547 7.8395 0.6116 13 1 7.4320 6.5983 0.7737 14 1 6.2840 6.7680 -1.3553 15 6 1.8592 3.5067 -0.0006 16 6 0.9836 4.7332 -0.0003 17 7 1.3107 2.3114 0.0000 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 4.0199 0.3565 -0.0005 22 1 5.1376 2.5523 0.0000 23 1 6.5719 4.2993 1.6200 24 1 0.7726 5.0293 -1.0280 25 1 0.0481 4.5117 0.5133 26 1 1.4967 5.5460 0.5138 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066327851.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:33 Heat of formation + Delta-G solvation = -39.611333 kcal Electronic energy + Delta-G solvation = -11736.332112 eV Core-core repulsion = 9586.054902 eV Total energy + Delta-G solvation = -2150.277209 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.86694 -38.56896 -35.67903 -33.39818 -32.18684 -28.92811 -28.30708 -26.10962 -23.21312 -22.43738 -19.27021 -18.67616 -17.36636 -16.80850 -16.57670 -15.52823 -14.96931 -14.62545 -14.52694 -13.89294 -13.52568 -13.25534 -13.03106 -12.84461 -12.72224 -12.47606 -12.23678 -11.67749 -11.58880 -11.05500 -10.26903 -10.10452 -9.08932 -8.63578 -6.29745 0.73648 0.97718 1.43218 1.53821 1.56970 2.22156 2.65564 2.73233 3.61517 3.88399 4.49721 4.53716 4.57177 4.60161 4.77982 4.85508 4.96515 4.99169 5.14428 5.24686 5.42788 5.52174 5.85397 5.96520 6.35275 6.64975 6.81523 6.93567 7.55396 8.31288 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.062826 B = 0.010889 C = 0.009527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.565445 B = 2570.670811 C = 2938.344524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.336 6.336 3 C 0.171 3.829 4 C -0.170 4.170 5 C -0.121 4.121 6 C 0.018 3.982 7 C -0.472 4.472 8 H 0.092 0.908 9 C 0.033 3.967 10 N -0.828 5.828 11 Si 0.987 3.013 12 H -0.256 1.256 13 H -0.272 1.272 14 H -0.260 1.260 15 C 0.010 3.990 16 C -0.064 4.064 17 N -0.520 5.520 18 H 0.040 0.960 19 H 0.042 0.958 20 H 0.119 0.881 21 H 0.124 0.876 22 H 0.126 0.874 23 H 0.290 0.710 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.539 0.521 -1.689 3.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.246 6.246 3 C -0.007 4.007 4 C -0.190 4.190 5 C -0.147 4.147 6 C 0.014 3.986 7 C -0.501 4.501 8 H 0.110 0.890 9 C -0.182 4.182 10 N -0.455 5.455 11 Si 0.807 3.193 12 H -0.180 1.180 13 H -0.196 1.196 14 H -0.184 1.184 15 C -0.129 4.129 16 C -0.121 4.121 17 N -0.242 5.242 18 H 0.059 0.941 19 H 0.061 0.939 20 H 0.137 0.863 21 H 0.142 0.858 22 H 0.144 0.856 23 H 0.101 0.899 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.136 0.125 -1.537 3.495 hybrid contribution 1.214 0.450 0.051 1.296 sum -1.922 0.575 -1.487 2.497 Atomic orbital electron populations 1.22745 0.77742 1.03349 1.00903 1.85988 1.22863 1.25153 1.90603 1.19473 0.89348 0.84356 1.07549 1.20619 0.91856 0.98935 1.07606 1.21353 1.00274 0.91091 1.02014 1.18635 0.92070 0.95029 0.92903 1.19706 1.00040 0.94639 1.35732 0.88967 1.26836 0.98050 1.01602 0.91666 1.69850 1.16405 1.36006 1.23199 0.85164 0.77145 0.77312 0.79630 1.17998 1.19618 1.18432 1.21354 0.92241 0.91542 1.07802 1.20263 0.97156 0.93040 1.01648 1.66543 1.41321 0.98900 1.17483 0.94146 0.93911 0.86252 0.85775 0.85630 0.89879 0.91595 0.92046 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.62 10.37 113.37 1.18 2.80 15 2 O -0.34 -14.67 10.46 -87.96 -0.92 -15.59 15 3 C 0.17 8.51 7.50 84.87 0.64 9.14 15 4 C -0.17 -8.46 9.97 22.19 0.22 -8.23 15 5 C -0.12 -6.43 8.74 22.65 0.20 -6.23 15 6 C 0.02 0.95 5.58 -21.18 -0.12 0.83 15 7 C -0.47 -23.93 8.14 23.42 0.19 -23.74 15 8 H 0.09 4.36 6.87 -2.91 -0.02 4.34 15 9 C 0.03 1.60 5.20 85.23 0.44 2.04 15 10 N -0.83 -41.74 10.93 21.82 0.24 -41.51 15 11 Si 0.99 36.07 29.59 68.60 2.03 38.10 15 12 H -0.26 -8.96 7.11 99.48 0.71 -8.26 15 13 H -0.27 -9.54 7.11 99.48 0.71 -8.83 15 14 H -0.26 -9.31 7.11 99.48 0.71 -8.60 15 15 C 0.01 0.49 6.86 43.21 0.30 0.78 15 16 C -0.06 -2.60 9.57 71.24 0.68 -1.92 15 17 N -0.52 -26.05 9.08 -294.68 -2.68 -28.73 15 18 H 0.04 1.39 8.10 -2.39 -0.02 1.37 15 19 H 0.04 1.45 8.10 -2.38 -0.02 1.43 15 20 H 0.12 2.96 8.14 -2.39 -0.02 2.94 15 21 H 0.12 5.54 8.06 -2.91 -0.02 5.51 15 22 H 0.13 6.73 6.24 -2.91 -0.02 6.71 15 23 H 0.29 13.25 8.30 -92.71 -0.77 12.48 15 24 H 0.07 2.44 8.14 -2.38 -0.02 2.42 15 25 H 0.06 2.30 8.14 -2.39 -0.02 2.28 15 26 H 0.07 2.87 6.77 -2.39 -0.02 2.85 15 Total: -1.00 -59.17 230.16 3.57 -55.60 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 1.18 Total: 16.66 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 3.72 Total: -24.54 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -2.44 Total: -70.23 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.92 Total: -15.59 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Total: -59.17 3.57 -55.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066327851.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.987 kcal (2) G-P(sol) polarization free energy of solvation -59.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds