Wall clock time and date at job start Mon Mar 30 2020 01:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33324 * 126.45911 * 2 1 4 4 C 1.30806 * 109.25100 * 180.17057 * 3 2 1 5 5 C 1.50697 * 125.15474 * 179.82853 * 4 3 2 6 6 C 1.53000 * 117.49504 * 351.07458 * 5 4 3 7 7 C 1.52997 * 60.00347 * 107.48912 * 6 5 4 8 8 O 1.34016 * 109.69184 * 359.56369 * 4 3 2 9 9 C 1.35487 * 107.71614 * 0.26631 * 8 4 3 10 10 C 1.39846 * 126.86818 * 180.02562 * 9 8 4 11 11 H 1.08006 * 119.99489 * 179.97438 * 10 9 8 12 12 C 1.40159 * 120.00389 * 359.97438 * 10 9 8 13 13 N 1.30803 * 120.00179 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99944 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47466 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47137 * 119.99851 * 14 12 10 17 17 H 1.48497 * 109.47264 * 239.99467 * 14 12 10 18 18 H 1.09003 * 109.46937 * 270.30351 * 1 2 3 19 19 H 1.09000 * 109.47138 * 30.30327 * 1 2 3 20 20 H 1.08997 * 109.47413 * 150.30662 * 1 2 3 21 21 H 1.08990 * 115.56356 * 205.38630 * 5 4 3 22 22 H 1.09002 * 117.49696 * 214.98125 * 6 5 4 23 23 H 1.09002 * 117.50343 * 0.02562 * 6 5 4 24 24 H 1.08999 * 117.49685 * 252.51237 * 7 6 5 25 25 H 1.08997 * 117.50044 * 107.48590 * 7 6 5 26 26 H 0.96996 * 120.00319 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2993 1.0723 0.0000 4 6 3.5488 0.6853 -0.0037 5 6 4.7422 1.6056 -0.0086 6 6 4.4821 3.0984 -0.2199 7 6 4.8872 2.5806 1.1616 8 8 3.6069 -0.6536 0.0034 9 6 2.3354 -1.1214 0.0059 10 6 1.9343 -2.4611 0.0135 11 1 0.8833 -2.7101 0.0152 12 6 2.8961 -3.4806 0.0190 13 7 4.1689 -3.1791 0.0164 14 14 2.3602 -5.2701 0.0284 15 1 0.8770 -5.3427 0.0293 16 1 2.8888 -5.9515 -1.1805 17 1 2.8888 -5.9387 1.2444 18 1 -0.3633 0.0054 1.0277 19 1 -0.3633 0.8872 -0.5185 20 1 -0.3634 -0.8927 -0.5090 21 1 5.6556 1.1889 -0.4327 22 1 5.2246 3.6638 -0.7831 23 1 3.4478 3.4150 -0.3550 24 1 4.1195 2.5564 1.9349 25 1 5.8961 2.8053 1.5073 26 1 4.8345 -3.8847 0.0198 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074341517.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:02 Heat of formation + Delta-G solvation = -3.509969 kcal Electronic energy + Delta-G solvation = -11726.524546 eV Core-core repulsion = 9577.812809 eV Total energy + Delta-G solvation = -2148.711737 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.98070 -37.94756 -35.74028 -35.11802 -31.93765 -29.28842 -26.82108 -24.06704 -23.22661 -21.45540 -21.03299 -19.40776 -17.37553 -16.98767 -16.65547 -15.67976 -15.32009 -14.83105 -13.90991 -13.79309 -13.55880 -13.07995 -12.82308 -12.80772 -12.43610 -12.36194 -12.01231 -11.88769 -11.38120 -11.32371 -11.05314 -10.80027 -9.29714 -8.86432 -6.52129 1.03881 1.36219 1.55955 1.59911 2.12909 2.14223 2.66350 3.06518 3.14465 3.79061 3.99246 4.18392 4.24913 4.57862 4.76899 4.80767 4.95343 4.96341 5.01508 5.12662 5.20922 5.33683 5.39774 5.67599 6.09570 6.31517 6.48694 6.58358 7.67947 8.16241 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.048978 B = 0.011444 C = 0.009538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.547351 B = 2446.151509 C = 2934.983313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 C -0.241 4.241 3 N -0.463 5.463 4 C 0.040 3.960 5 C -0.073 4.073 6 C -0.138 4.138 7 C -0.154 4.154 8 O -0.213 6.213 9 C 0.139 3.861 10 C -0.455 4.455 11 H 0.122 0.878 12 C 0.017 3.983 13 N -0.812 5.812 14 Si 1.011 2.989 15 H -0.244 1.244 16 H -0.262 1.262 17 H -0.262 1.262 18 H 0.048 0.952 19 H 0.055 0.945 20 H 0.062 0.938 21 H 0.122 0.878 22 H 0.133 0.867 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.131 0.869 26 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.733 1.564 0.307 1.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.365 4.365 3 N -0.192 5.192 4 C -0.161 4.161 5 C -0.093 4.093 6 C -0.175 4.175 7 C -0.192 4.192 8 O -0.102 6.102 9 C 0.084 3.916 10 C -0.484 4.484 11 H 0.139 0.861 12 C -0.200 4.200 13 N -0.438 5.438 14 Si 0.829 3.171 15 H -0.167 1.167 16 H -0.186 1.186 17 H -0.186 1.186 18 H 0.067 0.933 19 H 0.074 0.926 20 H 0.081 0.919 21 H 0.140 0.860 22 H 0.151 0.849 23 H 0.103 0.897 24 H 0.093 0.907 25 H 0.149 0.851 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.839 2.159 0.307 2.337 hybrid contribution 0.193 -1.419 0.011 1.432 sum 1.032 0.740 0.318 1.310 Atomic orbital electron populations 1.19447 0.86537 1.01056 1.00359 1.22037 0.97646 0.87480 1.29376 1.69170 1.01044 1.33105 1.15877 1.24869 0.94189 0.80572 1.16490 1.19774 0.92760 0.89235 1.07498 1.23002 1.03215 0.92118 0.99152 1.23088 1.03542 1.01236 0.91367 1.84657 1.30534 1.21663 1.73384 1.21004 0.79804 0.95825 0.94956 1.19271 0.96447 0.86743 1.45910 0.86053 1.27353 0.93968 1.07893 0.90821 1.69866 1.02913 1.38420 1.32646 0.84714 0.80453 0.72760 0.79169 1.16709 1.18609 1.18650 0.93287 0.92592 0.91889 0.86014 0.84911 0.89704 0.90701 0.85125 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.73 10.23 71.24 0.73 0.00 15 2 C -0.24 -13.33 7.27 42.62 0.31 -13.02 15 3 N -0.46 -25.47 10.74 -288.41 -3.10 -28.57 15 4 C 0.04 2.14 7.85 88.26 0.69 2.83 15 5 C -0.07 -3.01 6.33 -11.54 -0.07 -3.08 15 6 C -0.14 -4.43 10.13 30.59 0.31 -4.12 15 7 C -0.15 -5.05 10.23 30.60 0.31 -4.74 15 8 O -0.21 -12.97 9.17 -11.88 -0.11 -13.08 15 9 C 0.14 8.21 6.83 22.94 0.16 8.37 15 10 C -0.46 -24.79 9.09 23.13 0.21 -24.58 15 11 H 0.12 6.01 7.35 -2.91 -0.02 5.99 15 12 C 0.02 0.86 5.50 85.31 0.47 1.33 15 13 N -0.81 -43.94 12.06 21.87 0.26 -43.68 15 14 Si 1.01 36.70 29.56 68.60 2.03 38.73 15 15 H -0.24 -8.30 7.11 99.48 0.71 -7.59 15 16 H -0.26 -9.07 7.11 99.48 0.71 -8.36 15 17 H -0.26 -9.10 7.11 99.48 0.71 -8.39 15 18 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 19 H 0.06 2.28 8.14 -2.39 -0.02 2.26 15 20 H 0.06 2.58 7.60 -2.39 -0.02 2.57 15 21 H 0.12 4.61 8.14 -2.39 -0.02 4.59 15 22 H 0.13 3.17 8.14 -2.39 -0.02 3.15 15 23 H 0.08 3.06 7.86 -2.39 -0.02 3.04 15 24 H 0.07 2.73 8.14 -2.39 -0.02 2.71 15 25 H 0.13 3.24 8.14 -2.39 -0.02 3.22 15 26 H 0.30 14.14 8.30 -92.71 -0.77 13.37 15 Total: -1.00 -68.44 236.26 3.38 -65.07 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 1.18 Total: 18.53 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 3.12 Total: -37.01 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -2.83 Total: -72.25 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.11 Total: -13.08 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Total: -68.44 3.38 -65.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074341517.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.555 kcal (2) G-P(sol) polarization free energy of solvation -68.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds