Wall clock time and date at job start Mon Mar 30 2020 01:59:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.33324 * 126.45911 * 2 1
4 4 C 1.30806 * 109.25100 * 180.17057 * 3 2 1
5 5 C 1.50697 * 125.15474 * 179.82853 * 4 3 2
6 6 C 1.53000 * 117.49504 * 351.07458 * 5 4 3
7 7 C 1.52997 * 60.00347 * 107.48912 * 6 5 4
8 8 O 1.34016 * 109.69184 * 359.56369 * 4 3 2
9 9 C 1.35487 * 107.71614 * 0.26631 * 8 4 3
10 10 C 1.39846 * 126.86818 * 180.02562 * 9 8 4
11 11 H 1.08006 * 119.99489 * 179.97438 * 10 9 8
12 12 C 1.40159 * 120.00389 * 359.97438 * 10 9 8
13 13 N 1.30803 * 120.00179 * 359.97438 * 12 10 9
14 14 Si 1.86799 * 119.99944 * 180.02562 * 12 10 9
15 15 H 1.48492 * 109.47466 * 359.97438 * 14 12 10
16 16 H 1.48504 * 109.47137 * 119.99851 * 14 12 10
17 17 H 1.48497 * 109.47264 * 239.99467 * 14 12 10
18 18 H 1.09003 * 109.46937 * 270.30351 * 1 2 3
19 19 H 1.09000 * 109.47138 * 30.30327 * 1 2 3
20 20 H 1.08997 * 109.47413 * 150.30662 * 1 2 3
21 21 H 1.08990 * 115.56356 * 205.38630 * 5 4 3
22 22 H 1.09002 * 117.49696 * 214.98125 * 6 5 4
23 23 H 1.09002 * 117.50343 * 0.02562 * 6 5 4
24 24 H 1.08999 * 117.49685 * 252.51237 * 7 6 5
25 25 H 1.08997 * 117.50044 * 107.48590 * 7 6 5
26 26 H 0.96996 * 120.00319 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2993 1.0723 0.0000
4 6 3.5488 0.6853 -0.0037
5 6 4.7422 1.6056 -0.0086
6 6 4.4821 3.0984 -0.2199
7 6 4.8872 2.5806 1.1616
8 8 3.6069 -0.6536 0.0034
9 6 2.3354 -1.1214 0.0059
10 6 1.9343 -2.4611 0.0135
11 1 0.8833 -2.7101 0.0152
12 6 2.8961 -3.4806 0.0190
13 7 4.1689 -3.1791 0.0164
14 14 2.3602 -5.2701 0.0284
15 1 0.8770 -5.3427 0.0293
16 1 2.8888 -5.9515 -1.1805
17 1 2.8888 -5.9387 1.2444
18 1 -0.3633 0.0054 1.0277
19 1 -0.3633 0.8872 -0.5185
20 1 -0.3634 -0.8927 -0.5090
21 1 5.6556 1.1889 -0.4327
22 1 5.2246 3.6638 -0.7831
23 1 3.4478 3.4150 -0.3550
24 1 4.1195 2.5564 1.9349
25 1 5.8961 2.8053 1.5073
26 1 4.8345 -3.8847 0.0198
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000074341517.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:59:02
Heat of formation + Delta-G solvation = -3.509969 kcal
Electronic energy + Delta-G solvation = -11726.524546 eV
Core-core repulsion = 9577.812809 eV
Total energy + Delta-G solvation = -2148.711737 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 193.084 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-42.98070 -37.94756 -35.74028 -35.11802 -31.93765 -29.28842 -26.82108 -24.06704
-23.22661 -21.45540 -21.03299 -19.40776 -17.37553 -16.98767 -16.65547 -15.67976
-15.32009 -14.83105 -13.90991 -13.79309 -13.55880 -13.07995 -12.82308 -12.80772
-12.43610 -12.36194 -12.01231 -11.88769 -11.38120 -11.32371 -11.05314 -10.80027
-9.29714 -8.86432 -6.52129 1.03881 1.36219 1.55955 1.59911 2.12909
2.14223 2.66350 3.06518 3.14465 3.79061 3.99246 4.18392 4.24913
4.57862 4.76899 4.80767 4.95343 4.96341 5.01508 5.12662 5.20922
5.33683 5.39774 5.67599 6.09570 6.31517 6.48694 6.58358 7.67947
8.16241
Molecular weight = 193.08amu
Principal moments of inertia in cm(-1)
A = 0.048978 B = 0.011444 C = 0.009538
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 571.547351 B = 2446.151509 C = 2934.983313
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.017 4.017
2 C -0.241 4.241
3 N -0.463 5.463
4 C 0.040 3.960
5 C -0.073 4.073
6 C -0.138 4.138
7 C -0.154 4.154
8 O -0.213 6.213
9 C 0.139 3.861
10 C -0.455 4.455
11 H 0.122 0.878
12 C 0.017 3.983
13 N -0.812 5.812
14 Si 1.011 2.989
15 H -0.244 1.244
16 H -0.262 1.262
17 H -0.262 1.262
18 H 0.048 0.952
19 H 0.055 0.945
20 H 0.062 0.938
21 H 0.122 0.878
22 H 0.133 0.867
23 H 0.084 0.916
24 H 0.074 0.926
25 H 0.131 0.869
26 H 0.296 0.704
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.733 1.564 0.307 1.755
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C -0.365 4.365
3 N -0.192 5.192
4 C -0.161 4.161
5 C -0.093 4.093
6 C -0.175 4.175
7 C -0.192 4.192
8 O -0.102 6.102
9 C 0.084 3.916
10 C -0.484 4.484
11 H 0.139 0.861
12 C -0.200 4.200
13 N -0.438 5.438
14 Si 0.829 3.171
15 H -0.167 1.167
16 H -0.186 1.186
17 H -0.186 1.186
18 H 0.067 0.933
19 H 0.074 0.926
20 H 0.081 0.919
21 H 0.140 0.860
22 H 0.151 0.849
23 H 0.103 0.897
24 H 0.093 0.907
25 H 0.149 0.851
26 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 0.839 2.159 0.307 2.337
hybrid contribution 0.193 -1.419 0.011 1.432
sum 1.032 0.740 0.318 1.310
Atomic orbital electron populations
1.19447 0.86537 1.01056 1.00359 1.22037 0.97646 0.87480 1.29376
1.69170 1.01044 1.33105 1.15877 1.24869 0.94189 0.80572 1.16490
1.19774 0.92760 0.89235 1.07498 1.23002 1.03215 0.92118 0.99152
1.23088 1.03542 1.01236 0.91367 1.84657 1.30534 1.21663 1.73384
1.21004 0.79804 0.95825 0.94956 1.19271 0.96447 0.86743 1.45910
0.86053 1.27353 0.93968 1.07893 0.90821 1.69866 1.02913 1.38420
1.32646 0.84714 0.80453 0.72760 0.79169 1.16709 1.18609 1.18650
0.93287 0.92592 0.91889 0.86014 0.84911 0.89704 0.90701 0.85125
0.89338
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.02 -0.73 10.23 71.24 0.73 0.00 15
2 C -0.24 -13.33 7.27 42.62 0.31 -13.02 15
3 N -0.46 -25.47 10.74 -288.41 -3.10 -28.57 15
4 C 0.04 2.14 7.85 88.26 0.69 2.83 15
5 C -0.07 -3.01 6.33 -11.54 -0.07 -3.08 15
6 C -0.14 -4.43 10.13 30.59 0.31 -4.12 15
7 C -0.15 -5.05 10.23 30.60 0.31 -4.74 15
8 O -0.21 -12.97 9.17 -11.88 -0.11 -13.08 15
9 C 0.14 8.21 6.83 22.94 0.16 8.37 15
10 C -0.46 -24.79 9.09 23.13 0.21 -24.58 15
11 H 0.12 6.01 7.35 -2.91 -0.02 5.99 15
12 C 0.02 0.86 5.50 85.31 0.47 1.33 15
13 N -0.81 -43.94 12.06 21.87 0.26 -43.68 15
14 Si 1.01 36.70 29.56 68.60 2.03 38.73 15
15 H -0.24 -8.30 7.11 99.48 0.71 -7.59 15
16 H -0.26 -9.07 7.11 99.48 0.71 -8.36 15
17 H -0.26 -9.10 7.11 99.48 0.71 -8.39 15
18 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15
19 H 0.06 2.28 8.14 -2.39 -0.02 2.26 15
20 H 0.06 2.58 7.60 -2.39 -0.02 2.57 15
21 H 0.12 4.61 8.14 -2.39 -0.02 4.59 15
22 H 0.13 3.17 8.14 -2.39 -0.02 3.15 15
23 H 0.08 3.06 7.86 -2.39 -0.02 3.04 15
24 H 0.07 2.73 8.14 -2.39 -0.02 2.71 15
25 H 0.13 3.24 8.14 -2.39 -0.02 3.22 15
26 H 0.30 14.14 8.30 -92.71 -0.77 13.37 15
Total: -1.00 -68.44 236.26 3.38 -65.07
By element:
Atomic # 1 Polarization: 17.36 SS G_CDS: 1.18 Total: 18.53 kcal
Atomic # 6 Polarization: -40.12 SS G_CDS: 3.12 Total: -37.01 kcal
Atomic # 7 Polarization: -69.41 SS G_CDS: -2.83 Total: -72.25 kcal
Atomic # 8 Polarization: -12.97 SS G_CDS: -0.11 Total: -13.08 kcal
Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal
Total: -68.44 3.38 -65.07 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000074341517.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.555 kcal
(2) G-P(sol) polarization free energy of solvation -68.444 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.888 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.065 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.510 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds