Wall clock time and date at job start Mon Mar 30 2020 01:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36051 * 125.55067 * 2 1 4 4 C 1.39377 * 107.90286 * 180.28201 * 3 2 1 5 5 C 1.50693 * 126.46396 * 179.71153 * 4 3 2 6 6 C 1.38787 * 107.07107 * 359.57708 * 4 3 2 7 7 C 1.46600 * 126.25086 * 180.13852 * 6 4 3 8 8 O 1.22046 * 120.00373 * 0.30255 * 7 6 4 9 9 C 1.41434 * 119.99925 * 180.30872 * 7 6 4 10 10 H 1.08001 * 120.00124 * 0.02562 * 9 7 6 11 11 C 1.40386 * 120.00301 * 179.97438 * 9 7 6 12 12 N 1.30506 * 119.99909 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 120.00255 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46933 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46829 * 120.00083 * 13 11 9 16 16 H 1.48497 * 109.47086 * 240.00186 * 13 11 9 17 17 N 1.35656 * 125.54530 * 180.02562 * 2 1 3 18 18 H 0.97006 * 125.68803 * 359.97438 * 17 2 1 19 19 H 1.08999 * 109.47007 * 90.00244 * 1 2 3 20 20 H 1.09005 * 109.47422 * 210.00584 * 1 2 3 21 21 H 1.08998 * 109.47020 * 330.00580 * 1 2 3 22 22 H 1.08002 * 126.04507 * 0.02562 * 3 2 1 23 23 H 1.09005 * 109.46920 * 90.02259 * 5 4 3 24 24 H 1.08998 * 109.47173 * 210.02243 * 5 4 3 25 25 H 1.09000 * 109.47460 * 330.03013 * 5 4 3 26 26 H 0.97000 * 119.99997 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2980 1.1069 0.0000 4 6 3.6262 0.6844 -0.0065 5 6 4.8470 1.5678 -0.0150 6 6 3.6123 -0.7034 -0.0007 7 6 4.7857 -1.5821 -0.0015 8 8 5.9078 -1.1019 -0.0022 9 6 4.6176 -2.9864 -0.0015 10 1 3.6247 -3.4114 -0.0014 11 6 5.7413 -3.8280 -0.0028 12 7 6.9411 -3.3145 -0.0035 13 14 5.5192 -5.6827 -0.0022 14 1 4.0702 -6.0077 -0.0009 15 1 6.1539 -6.2576 -1.2154 16 1 6.1570 -6.2572 1.2096 17 7 2.2956 -1.1038 -0.0005 18 1 1.9836 -2.0223 -0.0006 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5137 22 1 1.9571 2.1317 0.0004 23 1 5.1473 1.7824 1.0107 24 1 5.6601 1.0589 -0.5327 25 1 4.6167 2.5010 -0.5289 26 1 7.7175 -3.8959 -0.0040 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082404870.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:38 Heat of formation + Delta-G solvation = -18.435708 kcal Electronic energy + Delta-G solvation = -11659.924661 eV Core-core repulsion = 9510.565696 eV Total energy + Delta-G solvation = -2149.358965 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.17927 -36.27781 -32.81761 -31.70944 -30.83520 -27.38208 -26.75878 -24.77112 -20.72958 -19.59001 -17.98042 -17.01333 -15.82640 -14.68076 -14.10561 -13.45212 -13.08558 -12.62835 -12.48892 -12.30963 -12.20129 -11.80145 -11.43308 -11.39675 -11.07259 -10.94082 -10.58175 -10.44397 -10.35557 -9.02559 -7.88497 -7.51065 -6.88457 -6.34740 -4.96755 2.68789 3.02702 3.08310 3.11947 3.56987 3.95259 4.12331 4.48387 5.44691 5.55924 5.75175 5.82113 6.03505 6.08808 6.27428 6.35807 6.58159 6.70068 6.89184 7.01515 7.13785 7.32603 7.78511 7.90190 8.00220 8.42029 8.73692 8.84650 10.27327 10.48732 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.044392 B = 0.011720 C = 0.009335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.594864 B = 2388.539716 C = 2998.683043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.014 4.014 3 C -0.205 4.205 4 C -0.147 4.147 5 C -0.073 4.073 6 C -0.002 4.002 7 C 0.417 3.583 8 O -0.528 6.528 9 C -0.526 4.526 10 H 0.064 0.936 11 C 0.082 3.918 12 N -0.733 5.733 13 Si 0.907 3.093 14 H -0.262 1.262 15 H -0.272 1.272 16 H -0.272 1.272 17 N -0.529 5.529 18 H 0.411 0.589 19 H 0.062 0.938 20 H 0.056 0.944 21 H 0.072 0.928 22 H 0.124 0.876 23 H 0.050 0.950 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.751 1.540 -0.048 8.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.129 4.129 3 C -0.230 4.230 4 C -0.153 4.153 5 C -0.130 4.130 6 C -0.116 4.116 7 C 0.312 3.688 8 O -0.416 6.416 9 C -0.558 4.558 10 H 0.082 0.918 11 C -0.141 4.141 12 N -0.361 5.361 13 Si 0.730 3.270 14 H -0.186 1.186 15 H -0.198 1.198 16 H -0.197 1.197 17 N -0.124 5.124 18 H 0.248 0.752 19 H 0.081 0.919 20 H 0.075 0.925 21 H 0.091 0.909 22 H 0.142 0.858 23 H 0.069 0.931 24 H 0.098 0.902 25 H 0.061 0.939 26 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.053 1.645 -0.049 8.219 hybrid contribution -0.539 -1.377 0.022 1.479 sum -8.591 0.269 -0.027 8.595 Atomic orbital electron populations 1.20196 0.89160 1.02292 1.01700 1.20354 0.92767 0.87014 1.12805 1.20369 0.92656 0.96583 1.13389 1.19939 0.94415 0.92356 1.08587 1.20108 0.95609 0.96427 1.00861 1.22894 0.84994 0.94981 1.08780 1.17184 0.84910 0.87669 0.79079 1.90571 1.24124 1.77614 1.49270 1.20772 0.93456 0.92861 1.48711 0.91786 1.25947 0.94663 1.00867 0.92659 1.69940 0.98678 1.36846 1.30637 0.86325 0.79586 0.82414 0.78628 1.18604 1.19752 1.19749 1.42003 1.06301 1.07687 1.56417 0.75180 0.91914 0.92463 0.90944 0.85839 0.93124 0.90235 0.93921 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.42 36.01 0.38 -0.61 15 2 C -0.01 -0.26 7.15 -81.69 -0.58 -0.85 15 3 C -0.20 -4.05 10.66 -39.94 -0.43 -4.48 15 4 C -0.15 -3.40 6.22 -104.00 -0.65 -4.05 15 5 C -0.07 -1.57 9.83 36.00 0.35 -1.22 15 6 C 0.00 -0.06 6.99 -81.69 -0.57 -0.63 15 7 C 0.42 12.01 6.89 -35.00 -0.24 11.77 15 8 O -0.53 -16.79 13.38 4.88 0.07 -16.73 15 9 C -0.53 -14.47 9.12 -37.56 -0.34 -14.81 15 10 H 0.06 1.58 6.97 -52.49 -0.37 1.22 15 11 C 0.08 2.20 5.50 -17.31 -0.10 2.11 15 12 N -0.73 -20.97 11.72 55.57 0.65 -20.32 15 13 Si 0.91 19.11 29.56 -169.99 -5.03 14.08 15 14 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15 15 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 16 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 17 N -0.53 -10.87 5.98 -5.36 -0.03 -10.91 15 18 H 0.41 7.50 8.08 -40.82 -0.33 7.17 15 19 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.12 2.09 8.06 -52.49 -0.42 1.67 15 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 15 24 H 0.08 1.92 6.52 -51.93 -0.34 1.58 15 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.27 7.01 8.29 -40.82 -0.34 6.67 15 LS Contribution 233.37 15.07 3.52 3.52 Total: -1.00 -32.54 233.37 -5.71 -38.25 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -2.70 Total: 4.87 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.18 Total: -12.75 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.62 Total: -31.23 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.07 Total: -16.73 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -32.54 -5.71 -38.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082404870.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.813 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds