Wall clock time and date at job start Mon Mar 30 2020 01:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35935 * 118.97215 * 2 1 4 4 C 1.38999 * 120.83676 * 180.28816 * 3 2 1 5 5 C 1.50694 * 120.57957 * 179.74061 * 4 3 2 6 6 C 1.40622 * 118.83221 * 359.46223 * 4 3 2 7 7 C 1.40506 * 120.92593 * 180.27865 * 6 4 3 8 8 H 1.08004 * 119.99542 * 323.86924 * 7 6 4 9 9 C 1.40037 * 120.00421 * 143.87878 * 7 6 4 10 10 N 1.30845 * 119.99735 * 339.42221 * 9 7 6 11 11 Si 1.86800 * 120.00315 * 159.42309 * 9 7 6 12 12 H 1.48500 * 109.46851 * 60.00146 * 11 9 7 13 13 H 1.48497 * 109.46936 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47089 * 300.00085 * 11 9 7 15 15 C 1.47293 * 118.14538 * 0.25119 * 6 4 3 16 16 O 1.21785 * 120.46414 * 179.97438 * 15 6 4 17 17 N 1.34781 * 119.06696 * 0.02562 * 15 6 4 18 18 H 0.97004 * 119.46985 * 180.02562 * 17 15 6 19 19 H 1.09002 * 109.47491 * 180.27884 * 1 2 3 20 20 H 1.09000 * 109.47196 * 300.28267 * 1 2 3 21 21 H 1.09007 * 109.47112 * 60.28002 * 1 2 3 22 22 H 1.07997 * 119.58041 * 0.02562 * 3 2 1 23 23 H 1.09003 * 109.46777 * 269.71445 * 5 4 3 24 24 H 1.09000 * 109.47269 * 149.72300 * 5 4 3 25 25 H 1.08996 * 109.47777 * 29.71583 * 5 4 3 26 26 H 0.97005 * 120.00014 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1654 1.1892 0.0000 4 6 3.5546 1.2345 -0.0060 5 6 4.2786 2.5561 -0.0118 6 6 4.2725 0.0253 -0.0005 7 6 5.6776 0.0197 -0.0004 8 1 6.2206 0.7706 -0.5552 9 6 6.3739 -0.9594 0.7189 10 7 5.7796 -1.6041 1.6902 11 14 8.1510 -1.3452 0.2919 12 1 8.9768 -0.1223 0.4588 13 1 8.6569 -2.4105 1.1944 14 1 8.2323 -1.8090 -1.1164 15 6 3.5105 -1.2351 0.0056 16 8 4.0893 -2.3066 0.0100 17 7 2.1635 -1.1860 0.0053 18 1 1.6559 -2.0126 0.0097 19 1 -0.3634 -1.0276 0.0050 20 1 -0.3633 0.5182 0.8874 21 1 -0.3634 0.5095 -0.8925 22 1 1.6019 2.1106 0.0004 23 1 4.4533 2.8701 -1.0409 24 1 5.2337 2.4495 0.5024 25 1 3.6727 3.3047 0.4986 26 1 6.2618 -2.2826 2.1882 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082664665.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:39 Heat of formation + Delta-G solvation = -49.167345 kcal Electronic energy + Delta-G solvation = -11972.498792 eV Core-core repulsion = 9821.807203 eV Total energy + Delta-G solvation = -2150.691589 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.10823 -37.55336 -36.16006 -34.21048 -31.93441 -29.63062 -28.37760 -25.62607 -22.80722 -21.91866 -19.75627 -18.36445 -16.99559 -16.79037 -16.11484 -15.77900 -14.81064 -14.24650 -13.99539 -13.78539 -13.66282 -13.39262 -13.16393 -12.88491 -12.67823 -12.37094 -12.12147 -11.81083 -11.61678 -10.92362 -10.38513 -9.99941 -8.76784 -8.28875 -6.08442 0.63730 1.35219 1.46646 1.49101 1.60606 2.22558 2.60682 2.83343 3.57169 4.21745 4.36101 4.60512 4.82345 4.94546 4.99588 5.07132 5.14797 5.22619 5.25038 5.37404 5.74082 5.87629 6.09710 6.32238 6.51245 6.72494 6.92974 6.96383 7.79823 8.37720 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.049136 B = 0.013863 C = 0.011391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.706570 B = 2019.223541 C = 2457.460544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.006 4.006 3 C -0.148 4.148 4 C -0.239 4.239 5 C -0.066 4.066 6 C -0.010 4.010 7 C -0.468 4.468 8 H 0.088 0.912 9 C 0.037 3.963 10 N -0.796 5.796 11 Si 0.977 3.023 12 H -0.247 1.247 13 H -0.274 1.274 14 H -0.270 1.270 15 C 0.490 3.510 16 O -0.590 6.590 17 N -0.603 5.603 18 H 0.399 0.601 19 H 0.068 0.932 20 H 0.083 0.917 21 H 0.086 0.914 22 H 0.141 0.859 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.077 4.401 -1.850 7.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C -0.171 4.171 4 C -0.243 4.243 5 C -0.123 4.123 6 C -0.016 4.016 7 C -0.497 4.497 8 H 0.106 0.894 9 C -0.182 4.182 10 N -0.419 5.419 11 Si 0.798 3.202 12 H -0.170 1.170 13 H -0.198 1.198 14 H -0.194 1.194 15 C 0.288 3.712 16 O -0.475 6.475 17 N -0.238 5.238 18 H 0.235 0.765 19 H 0.087 0.913 20 H 0.102 0.898 21 H 0.105 0.895 22 H 0.159 0.841 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.633 3.771 -1.643 6.975 hybrid contribution 0.581 -0.895 -0.032 1.068 sum -5.051 2.876 -1.675 6.049 Atomic orbital electron populations 1.20692 0.86684 1.03259 1.03813 1.20234 0.95424 0.84962 1.10320 1.19963 0.93302 0.96328 1.07460 1.20126 0.93600 0.94450 1.16141 1.20182 0.98941 0.93052 1.00077 1.19694 0.94282 0.89766 0.97846 1.19271 0.91275 1.12455 1.26663 0.89448 1.26718 1.04940 0.93700 0.92803 1.69785 1.40172 1.17765 1.14212 0.85347 0.76793 0.79164 0.78930 1.17014 1.19822 1.19450 1.19547 0.81544 0.91347 0.78773 1.90646 1.69528 1.32666 1.54649 1.42984 1.07183 1.09083 1.64597 0.76472 0.91334 0.89800 0.89515 0.84134 0.93214 0.94033 0.91806 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.15 10.08 71.23 0.72 -1.43 15 2 C -0.01 -0.23 6.80 41.44 0.28 0.06 15 3 C -0.15 -5.91 9.25 21.92 0.20 -5.71 15 4 C -0.24 -11.37 5.98 -19.10 -0.11 -11.48 15 5 C -0.07 -2.66 9.52 71.23 0.68 -1.98 15 6 C -0.01 -0.55 5.54 -19.76 -0.11 -0.66 15 7 C -0.47 -26.61 7.79 23.26 0.18 -26.43 15 8 H 0.09 4.69 7.45 -2.91 -0.02 4.67 15 9 C 0.04 2.05 4.58 85.28 0.39 2.44 15 10 N -0.80 -46.97 11.20 21.85 0.24 -46.73 15 11 Si 0.98 42.51 29.61 68.60 2.03 44.54 15 12 H -0.25 -9.77 7.11 99.48 0.71 -9.07 15 13 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 14 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 15 C 0.49 27.46 7.43 86.62 0.64 28.11 15 16 O -0.59 -36.95 15.00 -4.62 -0.07 -37.02 15 17 N -0.60 -26.76 5.22 -301.47 -1.57 -28.34 15 18 H 0.40 15.35 8.54 -92.71 -0.79 14.56 15 19 H 0.07 1.49 7.84 -2.39 -0.02 1.47 15 20 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 21 H 0.09 1.80 8.14 -2.38 -0.02 1.78 15 22 H 0.14 4.51 8.05 -2.91 -0.02 4.49 15 23 H 0.05 1.85 8.14 -2.39 -0.02 1.83 15 24 H 0.04 1.79 7.06 -2.39 -0.02 1.78 15 25 H 0.06 2.17 8.10 -2.39 -0.02 2.15 15 26 H 0.28 15.46 8.30 -92.70 -0.77 14.69 15 Total: -1.00 -70.27 229.09 3.91 -66.36 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.40 Total: 18.29 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 2.87 Total: -17.10 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -1.33 Total: -75.07 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -0.07 Total: -37.02 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -70.27 3.91 -66.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082664665.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.191 kcal (2) G-P(sol) polarization free energy of solvation -70.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds