Wall clock time and date at job start Mon Mar 30 2020 02:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86805 * 120.00094 * 2 1 4 4 H 1.48496 * 109.46816 * 270.00135 * 3 2 1 5 5 H 1.48502 * 109.47186 * 29.99717 * 3 2 1 6 6 H 1.48495 * 109.47524 * 150.00100 * 3 2 1 7 7 C 1.40268 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.40371 * 120.00009 * 0.02562 * 7 2 1 10 10 N 1.33066 * 126.31545 * 179.97438 * 9 7 2 11 11 C 1.32224 * 109.80197 * 180.02562 * 10 9 7 12 12 C 1.50697 * 125.16087 * 179.97438 * 11 10 9 13 13 C 1.53786 * 113.61519 * 140.86507 * 12 11 10 14 14 C 1.54049 * 86.98426 * 140.01979 * 13 12 11 15 15 C 1.53781 * 113.61630 * 238.47455 * 12 11 10 16 16 N 1.31398 * 109.67929 * 0.23215 * 11 10 9 17 17 N 1.37018 * 126.31641 * 0.02562 * 9 7 2 18 18 H 0.97006 * 127.01597 * 0.02562 * 17 9 7 19 19 H 0.96998 * 120.00118 * 359.97438 * 1 2 3 20 20 H 1.09002 * 112.84782 * 9.67097 * 12 11 10 21 21 H 1.08992 * 113.61675 * 254.61723 * 13 12 11 22 22 H 1.09000 * 113.60973 * 25.52011 * 13 12 11 23 23 H 1.09005 * 113.62125 * 220.02158 * 14 13 12 24 24 H 1.08996 * 113.68970 * 89.12734 * 14 13 12 25 25 H 1.08999 * 113.61567 * 334.48200 * 15 12 11 26 26 H 1.08998 * 113.61196 * 105.38554 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4379 2.6527 0.7000 6 1 3.5380 1.4403 0.7000 7 6 2.0077 -1.2148 0.0005 8 1 3.0878 -1.2148 0.0010 9 6 1.3059 -2.4304 0.0005 10 7 1.8404 -3.6490 0.0005 11 6 0.8811 -4.5589 0.0000 12 6 1.0993 -6.0500 -0.0007 13 6 0.1070 -6.8183 0.8881 14 6 0.0609 -7.8833 -0.2240 15 6 0.4596 -6.7657 -1.2022 16 7 -0.2914 -3.9658 -0.0054 17 7 -0.0560 -2.5812 -0.0004 18 1 -0.7217 -1.8755 -0.0016 19 1 -0.4850 0.8400 0.0004 20 1 2.1403 -6.3255 0.1680 21 1 0.5430 -7.1770 1.8204 22 1 -0.8401 -6.2991 1.0348 23 1 -0.9365 -8.2850 -0.4031 24 1 0.8174 -8.6607 -0.1175 25 1 -0.3912 -6.2322 -1.6259 26 1 1.1803 -7.0820 -1.9563 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083137485.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:01 Heat of formation + Delta-G solvation = 54.760597 kcal Electronic energy + Delta-G solvation = -11621.488452 eV Core-core repulsion = 9507.596267 eV Total energy + Delta-G solvation = -2113.892184 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.87149 -39.22192 -35.85443 -32.33504 -31.71998 -28.19437 -26.65587 -26.44582 -22.84955 -21.14176 -20.01048 -19.52269 -17.43540 -16.94766 -16.09315 -15.83917 -15.56687 -14.85287 -13.62518 -13.46329 -13.32587 -13.24192 -13.21314 -12.87188 -12.11875 -11.88147 -11.59959 -11.48040 -11.23520 -11.21579 -10.27192 -10.24584 -9.91677 -9.01313 -6.92546 1.15014 1.40325 1.58051 1.66100 2.15375 2.29487 2.76332 3.24068 3.73250 3.79127 3.88672 4.17509 4.30619 4.63262 4.81857 4.94176 4.99428 5.05362 5.09099 5.14676 5.35366 5.61278 5.67364 6.05045 6.21959 6.52408 6.57744 7.32687 8.03010 8.16011 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.106384 B = 0.008486 C = 0.008166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 263.133305 B = 3298.873564 C = 3427.818987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.037 3.963 3 Si 1.026 2.974 4 H -0.257 1.257 5 H -0.261 1.261 6 H -0.255 1.255 7 C -0.459 4.459 8 H 0.103 0.897 9 C 0.379 3.621 10 N -0.664 5.664 11 C 0.218 3.782 12 C -0.030 4.030 13 C -0.125 4.125 14 C -0.113 4.113 15 C -0.124 4.124 16 N -0.425 5.425 17 N -0.524 5.524 18 H 0.436 0.564 19 H 0.307 0.693 20 H 0.108 0.892 21 H 0.080 0.920 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.108 0.892 25 H 0.060 0.940 26 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 -4.431 -0.213 4.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.178 4.178 3 Si 0.844 3.156 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.178 1.178 7 C -0.500 4.500 8 H 0.121 0.879 9 C 0.127 3.873 10 N -0.403 5.403 11 C -0.065 4.065 12 C -0.051 4.051 13 C -0.163 4.163 14 C -0.151 4.151 15 C -0.163 4.163 16 N -0.260 5.260 17 N -0.250 5.250 18 H 0.290 0.710 19 H 0.119 0.881 20 H 0.127 0.873 21 H 0.098 0.902 22 H 0.083 0.917 23 H 0.100 0.900 24 H 0.126 0.874 25 H 0.079 0.921 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.009 -4.802 -0.211 4.807 hybrid contribution -0.262 1.547 -0.003 1.569 sum -0.252 -3.255 -0.214 3.272 Atomic orbital electron populations 1.68751 1.09439 1.32585 1.37522 1.27153 0.95767 1.05581 0.89346 0.84534 0.78410 0.72854 0.79846 1.18181 1.18467 1.17824 1.19051 0.95785 0.87218 1.47961 0.87924 1.21377 0.81914 0.93861 0.90181 1.70727 1.33456 0.98205 1.37922 1.24302 0.86978 0.97975 0.97248 1.21078 1.00829 0.82859 1.00309 1.22932 0.98320 0.96980 0.98114 1.22789 1.03075 0.95494 0.93692 1.22868 1.00024 0.97221 0.96156 1.77441 1.23383 0.88899 1.36290 1.48670 1.07748 1.04724 1.63847 0.70981 0.88110 0.87340 0.90184 0.91655 0.89995 0.87399 0.92123 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -41.68 10.72 21.88 0.23 -41.45 15 2 C 0.04 1.77 5.50 85.36 0.47 2.24 15 3 Si 1.03 35.89 29.56 68.60 2.03 37.92 15 4 H -0.26 -8.64 7.11 99.48 0.71 -7.94 15 5 H -0.26 -8.46 7.11 99.48 0.71 -7.75 15 6 H -0.25 -8.75 7.11 99.48 0.71 -8.04 15 7 C -0.46 -25.23 9.47 23.28 0.22 -25.00 15 8 H 0.10 5.44 7.85 -2.91 -0.02 5.41 15 9 C 0.38 22.57 7.67 133.83 1.03 23.60 15 10 N -0.66 -38.81 11.24 -185.92 -2.09 -40.90 15 11 C 0.22 11.47 7.15 138.74 0.99 12.46 15 12 C -0.03 -1.17 4.28 -11.01 -0.05 -1.22 15 13 C -0.12 -4.04 7.63 31.21 0.24 -3.80 15 14 C -0.11 -2.81 8.09 31.21 0.25 -2.56 15 15 C -0.12 -4.02 7.63 31.12 0.24 -3.78 15 16 N -0.42 -23.50 12.38 -51.55 -0.64 -24.14 15 17 N -0.52 -30.31 7.16 -55.51 -0.40 -30.71 15 18 H 0.44 24.48 6.38 -213.09 -1.36 23.12 15 19 H 0.31 13.17 8.29 -92.71 -0.77 12.41 15 20 H 0.11 3.98 8.14 -2.39 -0.02 3.97 15 21 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.06 2.41 7.76 -2.39 -0.02 2.40 15 23 H 0.08 1.79 8.14 -2.38 -0.02 1.78 15 24 H 0.11 2.08 8.14 -2.39 -0.02 2.06 15 25 H 0.06 2.24 8.09 -2.39 -0.02 2.22 15 26 H 0.08 2.31 8.14 -2.39 -0.02 2.29 15 Total: -1.00 -65.56 228.90 2.36 -63.20 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -0.17 Total: 34.15 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 3.39 Total: 1.93 kcal Atomic # 7 Polarization: -134.31 SS G_CDS: -2.89 Total: -137.20 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Total: -65.56 2.36 -63.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083137485.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.957 kcal (2) G-P(sol) polarization free energy of solvation -65.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds