Wall clock time and date at job start Mon Mar 30 2020 01:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46899 * 109.47038 * 59.71978 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38290 * 119.97052 * 279.72072 * 12 9 7 14 14 C 1.38240 * 120.10999 * 179.72529 * 13 12 9 15 15 C 1.38166 * 120.05437 * 0.55429 * 14 13 12 16 16 C 1.38702 * 119.94525 * 359.72239 * 15 14 13 17 17 O 1.35897 * 120.05692 * 179.97438 * 16 15 14 18 18 C 1.38115 * 119.97456 * 100.00070 * 12 9 7 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.00902 * 111.00292 * 296.04833 * 11 9 7 21 21 H 1.00903 * 111.00048 * 60.00129 * 11 9 7 22 22 H 1.08005 * 119.94640 * 359.97438 * 13 12 9 23 23 H 1.08004 * 119.97180 * 180.25661 * 14 13 12 24 24 H 1.08001 * 120.02739 * 179.69896 * 15 14 13 25 25 H 0.96703 * 114.00226 * 270.02624 * 17 16 15 26 26 H 1.08001 * 120.02561 * 0.02562 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 7 0.4065 -2.5716 -1.2052 12 6 2.2302 -3.6447 -0.0104 13 6 2.8330 -4.0330 -1.1928 14 6 3.7360 -5.0797 -1.1998 15 6 4.0299 -5.7479 -0.0267 16 6 3.4223 -5.3640 1.1596 17 8 3.7093 -6.0199 2.3147 18 6 2.5206 -4.3094 1.1649 19 1 -0.4850 0.8401 -0.0004 20 1 -0.3009 -1.8521 -1.1935 21 1 0.9645 -2.5165 -2.0440 22 1 2.6009 -3.5152 -2.1118 23 1 4.2086 -5.3785 -2.1238 24 1 4.7318 -6.5687 -0.0335 25 1 3.1311 -6.7744 2.4927 26 1 2.0458 -4.0089 2.0873 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084329831.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:35 Heat of formation + Delta-G solvation = -27.943692 kcal Electronic energy + Delta-G solvation = -11609.047880 eV Core-core repulsion = 9459.276618 eV Total energy + Delta-G solvation = -2149.771263 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.15142 -36.58382 -34.35233 -31.55647 -29.86390 -28.57903 -25.96162 -23.01720 -21.92949 -20.13265 -17.40758 -16.49859 -15.98234 -15.18888 -14.80883 -14.43474 -13.91545 -13.06160 -12.90619 -12.22687 -11.85534 -11.70871 -11.12481 -10.98701 -10.89569 -10.63159 -10.31642 -10.03928 -9.49606 -8.69407 -8.19475 -7.90419 -7.23011 -6.12031 -4.28989 1.89418 2.04478 3.23038 3.27887 3.31615 4.24515 4.36151 4.71348 5.10501 5.47213 5.53715 5.87538 6.02763 6.20930 6.38528 6.61788 6.67972 6.98597 7.05771 7.16668 7.42482 7.71232 7.75607 8.02665 8.11036 8.63180 8.89055 9.07729 9.42821 10.85569 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.048272 B = 0.010178 C = 0.009824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.906775 B = 2750.342028 C = 2849.429312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.067 3.933 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.238 3.762 10 H 0.048 0.952 11 N -0.850 5.850 12 C -0.009 4.009 13 C -0.117 4.117 14 C -0.111 4.111 15 C -0.173 4.173 16 C 0.093 3.907 17 O -0.504 6.504 18 C -0.148 4.148 19 H 0.267 0.733 20 H 0.356 0.644 21 H 0.312 0.688 22 H 0.120 0.880 23 H 0.116 0.884 24 H 0.115 0.885 25 H 0.381 0.619 26 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.905 -7.882 -0.781 8.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.074 0.926 9 C 0.128 3.872 10 H 0.066 0.934 11 N -0.380 5.380 12 C -0.009 4.009 13 C -0.136 4.136 14 C -0.130 4.130 15 C -0.192 4.192 16 C 0.049 3.951 17 O -0.314 6.314 18 C -0.167 4.167 19 H 0.077 0.923 20 H 0.172 0.828 21 H 0.121 0.879 22 H 0.138 0.862 23 H 0.134 0.866 24 H 0.133 0.867 25 H 0.236 0.764 26 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.955 -8.050 -0.448 8.981 hybrid contribution 0.564 1.594 -0.132 1.695 sum 4.519 -6.457 -0.580 7.902 Atomic orbital electron populations 1.69734 1.05862 1.27398 1.50287 1.25023 0.94965 0.99356 0.94264 0.86543 0.79555 0.82449 0.78830 1.20168 1.21129 1.20092 1.21781 0.93682 0.90946 1.52081 0.92565 1.18026 0.89063 0.88198 0.91889 0.93447 1.59541 1.18424 1.56112 1.03883 1.20397 0.94905 0.94150 0.91485 1.20988 0.96879 0.97025 0.98660 1.20925 0.98348 0.96600 0.97093 1.21116 1.03258 1.02456 0.92347 1.18438 0.97027 0.94712 0.84915 1.84810 1.59706 1.47380 1.39455 1.21299 0.99133 0.97249 0.99009 0.92345 0.82756 0.87881 0.86162 0.86642 0.86693 0.76440 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.55 11.53 55.43 0.64 -23.91 15 2 C 0.07 1.79 5.38 -17.82 -0.10 1.69 15 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 15 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 7 C -0.55 -14.75 8.71 -34.44 -0.30 -15.05 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 9 C 0.24 5.96 2.95 -70.02 -0.21 5.75 15 10 H 0.05 1.30 8.00 -51.93 -0.42 0.88 15 11 N -0.85 -20.14 9.01 -6.65 -0.06 -20.20 15 12 C -0.01 -0.19 4.89 -104.65 -0.51 -0.70 15 13 C -0.12 -2.31 9.29 -39.56 -0.37 -2.67 15 14 C -0.11 -1.89 10.04 -39.61 -0.40 -2.29 15 15 C -0.17 -2.90 9.99 -39.44 -0.39 -3.29 15 16 C 0.09 1.68 6.70 -39.22 -0.26 1.42 15 17 O -0.50 -7.90 13.50 -19.42 -0.26 -8.16 15 18 C -0.15 -3.02 9.61 -39.44 -0.38 -3.40 15 19 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 20 H 0.36 9.02 7.07 -39.29 -0.28 8.74 15 21 H 0.31 6.96 7.33 -39.29 -0.29 6.68 15 22 H 0.12 2.29 6.65 -52.48 -0.35 1.94 15 23 H 0.12 1.60 8.06 -52.48 -0.42 1.17 15 24 H 0.12 1.63 8.06 -52.49 -0.42 1.20 15 25 H 0.38 3.93 9.06 45.56 0.41 4.34 15 26 H 0.12 2.44 8.04 -52.49 -0.42 2.02 15 LS Contribution 230.77 15.07 3.48 3.48 Total: -1.00 -28.95 230.77 -5.87 -34.81 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -1.73 Total: 16.53 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -2.92 Total: -18.54 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.58 Total: -44.11 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.26 Total: -8.16 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.95 -5.87 -34.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329831.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.871 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds