Wall clock time and date at job start Mon Mar 30 2020 01:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46899 * 109.47038 * 59.71978 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38290 * 119.97052 * 279.72072 * 12 9 7 14 14 C 1.38240 * 120.10999 * 179.72529 * 13 12 9 15 15 C 1.38166 * 120.05437 * 0.55429 * 14 13 12 16 16 C 1.38702 * 119.94525 * 359.72239 * 15 14 13 17 17 O 1.35897 * 120.05692 * 179.97438 * 16 15 14 18 18 C 1.38115 * 119.97456 * 100.00070 * 12 9 7 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.00902 * 111.00292 * 296.04833 * 11 9 7 21 21 H 1.00903 * 111.00048 * 60.00129 * 11 9 7 22 22 H 1.08005 * 119.94640 * 359.97438 * 13 12 9 23 23 H 1.08004 * 119.97180 * 180.25661 * 14 13 12 24 24 H 1.08001 * 120.02739 * 179.69896 * 15 14 13 25 25 H 0.96703 * 114.00226 * 270.02624 * 17 16 15 26 26 H 1.08001 * 120.02561 * 0.02562 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 7 0.4065 -2.5716 -1.2052 12 6 2.2302 -3.6447 -0.0104 13 6 2.8330 -4.0330 -1.1928 14 6 3.7360 -5.0797 -1.1998 15 6 4.0299 -5.7479 -0.0267 16 6 3.4223 -5.3640 1.1596 17 8 3.7093 -6.0199 2.3147 18 6 2.5206 -4.3094 1.1649 19 1 -0.4850 0.8401 -0.0004 20 1 -0.3009 -1.8521 -1.1935 21 1 0.9645 -2.5165 -2.0440 22 1 2.6009 -3.5152 -2.1118 23 1 4.2086 -5.3785 -2.1238 24 1 4.7318 -6.5687 -0.0335 25 1 3.1311 -6.7744 2.4927 26 1 2.0458 -4.0089 2.0873 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084329831.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:35 Heat of formation + Delta-G solvation = -49.620684 kcal Electronic energy + Delta-G solvation = -11609.987865 eV Core-core repulsion = 9459.276618 eV Total energy + Delta-G solvation = -2150.711247 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.58174 -38.04061 -36.13102 -33.47687 -31.42661 -30.08534 -27.96678 -24.77844 -23.35915 -21.73891 -18.88544 -18.49713 -17.47704 -16.79522 -16.53522 -15.90825 -15.57766 -14.85253 -14.43755 -14.03553 -13.54905 -13.21220 -12.91407 -12.74223 -12.68941 -12.21530 -11.98851 -11.95848 -11.11902 -10.74008 -9.69328 -9.40033 -9.18183 -8.15074 -6.41805 0.46825 0.58422 1.37079 1.37901 1.46481 2.34373 2.88873 3.02715 3.39587 4.11032 4.14485 4.33358 4.60212 4.63106 4.82966 4.97401 5.19284 5.34150 5.56153 5.57705 5.66438 5.89288 6.09232 6.10808 6.59939 6.88005 6.93421 7.08975 7.34915 8.79067 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.048272 B = 0.010178 C = 0.009824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.906775 B = 2750.342028 C = 2849.429312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.563 4.563 8 H 0.045 0.955 9 C 0.242 3.758 10 H 0.009 0.991 11 N -0.840 5.840 12 C -0.038 4.038 13 C -0.132 4.132 14 C -0.099 4.099 15 C -0.164 4.164 16 C 0.100 3.900 17 O -0.508 6.508 18 C -0.172 4.172 19 H 0.269 0.731 20 H 0.346 0.654 21 H 0.320 0.680 22 H 0.120 0.880 23 H 0.155 0.845 24 H 0.152 0.848 25 H 0.407 0.593 26 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.586 -8.865 -1.423 10.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.602 4.602 8 H 0.064 0.936 9 C 0.131 3.869 10 H 0.027 0.973 11 N -0.369 5.369 12 C -0.039 4.039 13 C -0.150 4.150 14 C -0.117 4.117 15 C -0.182 4.182 16 C 0.056 3.944 17 O -0.321 6.321 18 C -0.191 4.191 19 H 0.078 0.922 20 H 0.160 0.840 21 H 0.130 0.870 22 H 0.138 0.862 23 H 0.173 0.827 24 H 0.169 0.831 25 H 0.265 0.735 26 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.633 -9.065 -1.087 10.728 hybrid contribution 0.055 1.789 0.117 1.793 sum 5.688 -7.276 -0.970 9.286 Atomic orbital electron populations 1.69833 1.06935 1.28193 1.50492 1.25756 0.95791 1.02383 0.93832 0.85580 0.78403 0.78712 0.78755 1.19473 1.20374 1.20224 1.21992 0.93286 0.92397 1.52525 0.93627 1.17815 0.89096 0.89292 0.90668 0.97293 1.59493 1.18107 1.55332 1.03990 1.20189 0.95893 0.94463 0.93311 1.21073 0.97944 0.98386 0.97632 1.21308 0.96697 0.94751 0.98923 1.21517 1.02699 1.02704 0.91322 1.18461 0.95859 0.93902 0.86190 1.84741 1.60348 1.48436 1.38585 1.21321 1.00791 0.98854 0.98159 0.92166 0.83988 0.86972 0.86190 0.82717 0.83072 0.73469 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.15 11.53 21.45 0.25 -50.91 15 2 C 0.02 1.24 5.38 84.66 0.46 1.70 15 3 Si 0.96 43.27 29.54 68.60 2.03 45.29 15 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 7 C -0.56 -31.16 8.71 25.60 0.22 -30.94 15 8 H 0.05 2.56 7.74 -2.91 -0.02 2.54 15 9 C 0.24 12.54 2.95 43.42 0.13 12.66 15 10 H 0.01 0.53 8.00 -2.38 -0.02 0.51 15 11 N -0.84 -40.88 9.01 -174.95 -1.58 -42.45 15 12 C -0.04 -1.69 4.89 -19.88 -0.10 -1.79 15 13 C -0.13 -5.06 9.29 22.28 0.21 -4.85 15 14 C -0.10 -3.01 10.04 22.25 0.22 -2.79 15 15 C -0.16 -4.85 9.99 22.36 0.22 -4.63 15 16 C 0.10 3.41 6.70 22.50 0.15 3.56 15 17 O -0.51 -14.59 13.50 -92.39 -1.25 -15.84 15 18 C -0.17 -7.10 9.61 22.36 0.21 -6.89 15 19 H 0.27 14.27 8.31 -92.70 -0.77 13.50 15 20 H 0.35 18.01 7.07 -89.69 -0.63 17.38 15 21 H 0.32 14.50 7.33 -89.69 -0.66 13.84 15 22 H 0.12 4.48 6.65 -2.91 -0.02 4.46 15 23 H 0.16 3.49 8.06 -2.91 -0.02 3.47 15 24 H 0.15 3.42 8.06 -2.91 -0.02 3.39 15 25 H 0.41 7.19 9.06 -74.05 -0.67 6.52 15 26 H 0.11 4.59 8.04 -2.91 -0.02 4.56 15 Total: -1.00 -62.40 230.77 0.43 -61.96 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: -0.74 Total: 35.90 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 1.73 Total: -33.96 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -1.33 Total: -93.36 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -1.25 Total: -15.84 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -62.40 0.43 -61.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329831.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.342 kcal (2) G-P(sol) polarization free energy of solvation -62.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds