Wall clock time and date at job start Mon Mar 30 2020 01:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 11 11 N 1.46905 * 109.47417 * 299.99475 * 9 7 2 12 12 C 1.50702 * 109.47168 * 180.02562 * 9 7 2 13 13 C 1.38268 * 119.94363 * 79.72159 * 12 9 7 14 14 C 1.38146 * 120.05825 * 179.72920 * 13 12 9 15 15 C 1.38736 * 119.93989 * 0.54905 * 14 13 12 16 16 O 1.35899 * 120.05664 * 179.74824 * 15 14 13 17 17 C 1.38736 * 119.89120 * 359.72724 * 15 14 13 18 18 C 1.38147 * 119.93920 * 359.97438 * 17 15 14 19 19 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 20 20 H 1.00899 * 110.99919 * 176.04277 * 11 9 7 21 21 H 1.00895 * 111.00194 * 300.00967 * 11 9 7 22 22 H 1.08006 * 119.97371 * 0.02562 * 13 12 9 23 23 H 1.08001 * 120.03283 * 180.27690 * 14 13 12 24 24 H 0.96695 * 113.99913 * 269.97809 * 16 15 14 25 25 H 1.07998 * 120.03078 * 179.97438 * 17 15 14 26 26 H 1.08001 * 119.97165 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 1 0.6280 -2.5591 -0.8867 11 7 0.4013 -2.5741 1.2019 12 6 2.2300 -3.6447 0.0133 13 6 2.8355 -4.0273 1.1960 14 6 3.7292 -5.0807 1.2066 15 6 4.0276 -5.7475 0.0271 16 8 4.9103 -6.7808 0.0339 17 6 3.4230 -5.3580 -1.1593 18 6 2.5254 -4.3079 -1.1634 19 1 -0.4851 -0.8400 -0.0004 20 1 -0.1627 -3.4107 1.1930 21 1 0.9558 -2.5206 2.0432 22 1 2.6060 -3.5053 2.1132 23 1 4.1986 -5.3821 2.1314 24 1 5.8279 -6.5152 -0.1162 25 1 3.6540 -5.8752 -2.0788 26 1 2.0541 -4.0046 -2.0866 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084329836.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:20 Heat of formation + Delta-G solvation = -49.496249 kcal Electronic energy + Delta-G solvation = -11603.314466 eV Core-core repulsion = 9452.608614 eV Total energy + Delta-G solvation = -2150.705852 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.72880 -38.28883 -36.06824 -33.31354 -31.94591 -30.15201 -27.42145 -24.53276 -23.58991 -21.98947 -19.34697 -18.90237 -17.23532 -16.74064 -16.18531 -16.02849 -15.55032 -15.08320 -14.56189 -14.32395 -13.98627 -13.12474 -13.00471 -12.76590 -12.55206 -12.14875 -11.90270 -11.37203 -10.83481 -10.49062 -9.95185 -9.50440 -9.18782 -8.38956 -6.25959 0.33697 0.39589 1.56128 1.64900 1.80571 2.60102 2.74723 3.30947 3.32237 3.94256 4.03920 4.17177 4.21113 4.47991 4.58356 4.92965 4.96463 5.14836 5.40169 5.42163 5.77266 5.86690 5.96047 6.21650 6.66318 6.76777 6.85889 7.02740 7.65613 8.97106 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.055618 B = 0.009713 C = 0.009238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.315343 B = 2882.118284 C = 3030.095961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 1.115 2.885 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.616 4.616 8 H 0.036 0.964 9 C 0.239 3.761 10 H 0.008 0.992 11 N -0.836 5.836 12 C -0.102 4.102 13 C -0.113 4.113 14 C -0.144 4.144 15 C 0.084 3.916 16 O -0.504 6.504 17 C -0.142 4.142 18 C -0.120 4.120 19 H 0.279 0.721 20 H 0.318 0.682 21 H 0.331 0.669 22 H 0.120 0.880 23 H 0.145 0.855 24 H 0.408 0.592 25 H 0.146 0.854 26 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.683 -9.219 0.459 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.215 4.215 3 Si 0.939 3.061 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.654 4.654 8 H 0.054 0.946 9 C 0.130 3.870 10 H 0.026 0.974 11 N -0.365 5.365 12 C -0.104 4.104 13 C -0.131 4.131 14 C -0.162 4.162 15 C 0.040 3.960 16 O -0.317 6.317 17 C -0.161 4.161 18 C -0.138 4.138 19 H 0.091 0.909 20 H 0.129 0.871 21 H 0.145 0.855 22 H 0.138 0.862 23 H 0.163 0.837 24 H 0.266 0.734 25 H 0.163 0.837 26 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.636 -7.258 0.296 10.539 hybrid contribution 0.869 -2.182 0.057 2.350 sum 8.504 -9.441 0.352 12.711 Atomic orbital electron populations 1.70611 1.07742 1.32225 1.44936 1.26992 0.96700 1.05470 0.92312 0.82954 0.74013 0.71892 0.77241 1.20365 1.20701 1.20793 1.22021 0.93089 0.92121 1.58215 0.94576 1.18062 0.88318 0.91068 0.89555 0.97429 1.59215 1.28779 1.43494 1.04987 1.21265 0.98603 0.96509 0.94041 1.20887 0.97308 0.97009 0.97902 1.21539 0.99923 0.95689 0.99032 1.18402 0.95351 0.89820 0.92431 1.84748 1.21326 1.30944 1.94674 1.21543 0.98593 0.97315 0.98636 1.21062 0.98922 0.96003 0.97844 0.90949 0.87098 0.85530 0.86186 0.83706 0.73405 0.83666 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.13 13.50 21.45 0.29 -55.84 15 2 C -0.01 -0.63 5.39 84.66 0.46 -0.18 15 3 Si 1.12 50.75 29.90 68.60 2.05 52.80 15 4 H -0.28 -11.91 7.11 99.48 0.71 -11.20 15 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 7 C -0.62 -34.50 8.70 25.60 0.22 -34.28 15 8 H 0.04 2.05 7.74 -2.91 -0.02 2.03 15 9 C 0.24 11.95 2.47 43.42 0.11 12.06 15 10 H 0.01 0.43 7.87 -2.39 -0.02 0.41 15 11 N -0.84 -38.64 7.61 -174.95 -1.33 -39.97 15 12 C -0.10 -4.29 4.88 -19.85 -0.10 -4.39 15 13 C -0.11 -4.18 9.28 22.25 0.21 -3.97 15 14 C -0.14 -4.48 9.99 22.37 0.22 -4.26 15 15 C 0.08 2.52 6.71 22.51 0.15 2.67 15 16 O -0.50 -12.11 13.50 -92.42 -1.25 -13.36 15 17 C -0.14 -4.47 9.99 22.37 0.22 -4.24 15 18 C -0.12 -4.51 9.66 22.25 0.22 -4.29 15 19 H 0.28 17.20 6.39 -92.71 -0.59 16.61 15 20 H 0.32 12.97 9.06 -89.69 -0.81 12.16 15 21 H 0.33 14.57 7.34 -89.70 -0.66 13.91 15 22 H 0.12 4.37 6.67 -2.91 -0.02 4.35 15 23 H 0.15 3.71 8.06 -2.91 -0.02 3.68 15 24 H 0.41 5.60 9.06 -74.06 -0.67 4.92 15 25 H 0.15 3.72 8.06 -2.91 -0.02 3.69 15 26 H 0.12 4.41 8.03 -2.91 -0.02 4.38 15 Total: -1.00 -66.47 231.18 0.73 -65.74 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: -0.74 Total: 31.50 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 1.71 Total: -40.88 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -1.04 Total: -95.81 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -1.25 Total: -13.36 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.05 Total: 52.80 kcal Total: -66.47 0.73 -65.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329836.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.248 kcal (2) G-P(sol) polarization free energy of solvation -66.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds