Wall clock time and date at job start Mon Mar 30 2020 01:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00215 * 2 1 4 4 H 1.48494 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46971 * 300.00776 * 3 2 1 6 6 H 1.48504 * 109.47031 * 60.00243 * 3 2 1 7 7 C 1.37878 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99584 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00434 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47177 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46798 * 179.97438 * 10 9 7 12 12 C 1.34869 * 125.64751 * 264.69164 * 11 10 9 13 13 C 1.35641 * 109.06230 * 180.26938 * 12 11 10 14 14 C 1.39596 * 107.90217 * 359.97438 * 13 12 11 15 15 C 1.37875 * 125.64530 * 85.00402 * 11 10 9 16 16 C 1.41348 * 126.30402 * 359.73012 * 15 11 10 17 17 O 1.21439 * 119.99989 * 180.02562 * 16 15 11 18 18 H 0.97001 * 120.00068 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.46662 * 59.99853 * 9 7 2 20 20 H 1.09002 * 109.46625 * 300.00444 * 9 7 2 21 21 H 1.08996 * 109.46935 * 60.00549 * 10 9 7 22 22 H 1.08997 * 109.47340 * 299.99686 * 10 9 7 23 23 H 1.07999 * 125.47472 * 0.21898 * 12 11 10 24 24 H 1.07998 * 126.04958 * 179.97438 * 13 12 11 25 25 H 1.08006 * 126.52675 * 180.02562 * 14 13 12 26 26 H 1.07999 * 120.00120 * 359.97438 * 16 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5126 -4.9308 -0.0012 12 6 1.2086 -5.6624 1.0903 13 6 0.5323 -6.7732 0.7048 14 6 0.4058 -6.7378 -0.6850 15 6 1.0251 -5.5777 -1.1169 16 6 1.1366 -5.1370 -2.4553 17 8 0.6617 -5.8006 -3.3547 18 1 -0.4850 0.8401 0.0004 19 1 0.6240 -2.5566 -0.8903 20 1 0.6246 -2.5570 0.8897 21 1 2.8724 -3.6048 0.8877 22 1 2.8711 -3.6040 -0.8923 23 1 1.4634 -5.4055 2.1079 24 1 0.1579 -7.5479 1.3576 25 1 -0.0822 -7.4754 -1.3050 26 1 1.6435 -4.2097 -2.6781 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085580253.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:41 Heat of formation + Delta-G solvation = -15.821664 kcal Electronic energy + Delta-G solvation = -11440.064734 eV Core-core repulsion = 9290.819122 eV Total energy + Delta-G solvation = -2149.245612 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.32721 -39.52791 -36.05775 -34.06825 -30.78782 -30.69453 -26.73353 -25.05646 -23.39453 -21.52809 -20.13122 -18.86712 -17.98092 -16.72636 -16.65081 -15.90571 -15.65419 -15.01643 -14.71173 -14.46285 -14.05901 -13.55113 -13.22936 -13.17605 -12.87930 -12.50925 -12.03896 -11.80758 -11.39823 -10.90868 -10.63324 -9.65206 -9.18924 -8.25746 -6.38927 0.08550 1.42072 1.43584 1.55647 1.78660 1.99827 2.27369 2.40919 3.10058 3.53544 3.96291 4.08169 4.33499 4.43164 4.54895 4.68034 4.70478 5.11569 5.27910 5.36927 5.42713 5.70254 5.81194 6.01420 6.10900 6.37462 6.53127 6.78452 7.32672 8.86390 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.050033 B = 0.008886 C = 0.008167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.492999 B = 3150.334308 C = 3427.475517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.255 1.255 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.019 3.981 10 C 0.107 3.893 11 N -0.408 5.408 12 C 0.041 3.959 13 C -0.229 4.229 14 C -0.112 4.112 15 C -0.149 4.149 16 C 0.410 3.590 17 O -0.512 6.512 18 H 0.264 0.736 19 H -0.008 1.008 20 H -0.003 1.003 21 H 0.110 0.890 22 H 0.096 0.904 23 H 0.196 0.804 24 H 0.169 0.831 25 H 0.148 0.852 26 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.016 -8.144 2.832 9.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.178 1.178 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.095 0.905 9 C -0.019 4.019 10 C -0.013 4.013 11 N -0.081 5.081 12 C -0.099 4.099 13 C -0.252 4.252 14 C -0.139 4.139 15 C -0.258 4.258 16 C 0.276 3.724 17 O -0.390 6.390 18 H 0.073 0.927 19 H 0.011 0.989 20 H 0.016 0.984 21 H 0.129 0.871 22 H 0.114 0.886 23 H 0.213 0.787 24 H 0.187 0.813 25 H 0.166 0.834 26 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.842 -8.019 2.286 9.642 hybrid contribution -0.102 1.086 0.036 1.091 sum 4.740 -6.933 2.323 8.714 Atomic orbital electron populations 1.70117 1.08082 1.27967 1.51095 1.25970 0.95608 1.03567 0.94426 0.85346 0.79381 0.78525 0.77481 1.17799 1.20942 1.20695 1.21524 0.94068 0.91074 1.51284 0.90534 1.19280 0.94334 0.92488 0.95769 1.22284 0.94576 0.79169 1.05221 1.44608 1.39800 1.17627 1.06038 1.22704 1.01178 0.92920 0.93112 1.21216 1.08065 1.01179 0.94743 1.21817 0.99658 0.96171 0.96249 1.20545 1.14792 0.99973 0.90504 1.21774 0.76239 0.88766 0.85668 1.90506 1.42075 1.57794 1.48660 0.92705 0.98913 0.98412 0.87147 0.88616 0.78700 0.81326 0.83411 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.50 13.29 21.45 0.28 -54.22 15 2 C 0.00 0.15 5.46 84.65 0.46 0.62 15 3 Si 0.97 41.40 29.54 68.60 2.03 43.42 15 4 H -0.25 -10.09 7.11 99.48 0.71 -9.39 15 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 6 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 7 C -0.54 -27.59 9.11 25.60 0.23 -27.36 15 8 H 0.08 3.59 7.74 -2.91 -0.02 3.56 15 9 C 0.02 0.90 5.30 29.85 0.16 1.06 15 10 C 0.11 3.74 5.71 86.38 0.49 4.23 15 11 N -0.41 -13.69 2.75 -516.29 -1.42 -15.11 15 12 C 0.04 1.15 11.33 83.62 0.95 2.10 15 13 C -0.23 -6.25 10.81 22.00 0.24 -6.01 15 14 C -0.11 -3.61 10.59 22.64 0.24 -3.37 15 15 C -0.15 -5.30 6.71 39.00 0.26 -5.03 15 16 C 0.41 14.87 11.06 68.59 0.76 15.63 15 17 O -0.51 -20.83 17.62 -3.52 -0.06 -20.89 15 18 H 0.26 14.57 8.31 -92.71 -0.77 13.80 15 19 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 15 20 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 15 21 H 0.11 3.33 8.12 -2.39 -0.02 3.31 15 22 H 0.10 3.07 7.57 -2.39 -0.02 3.05 15 23 H 0.20 4.17 8.06 -2.91 -0.02 4.15 15 24 H 0.17 3.46 8.06 -2.91 -0.02 3.43 15 25 H 0.15 4.41 8.06 -2.91 -0.02 4.39 15 26 H 0.11 3.46 7.50 -2.91 -0.02 3.44 15 Total: -1.00 -64.12 240.29 5.78 -58.34 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.16 Total: 6.60 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 3.79 Total: -18.15 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -1.13 Total: -69.33 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.06 Total: -20.89 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -64.12 5.78 -58.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085580253.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.520 kcal (2) G-P(sol) polarization free energy of solvation -64.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds