Wall clock time and date at job start Mon Mar 30 2020 01:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99730 * 2 1 4 4 H 1.48503 * 109.46991 * 270.00055 * 3 2 1 5 5 H 1.48496 * 109.46992 * 29.99957 * 3 2 1 6 6 H 1.48496 * 109.46822 * 150.00473 * 3 2 1 7 7 C 1.37871 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00331 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99812 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46746 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47040 * 180.02562 * 10 9 7 12 12 C 1.36498 * 124.77912 * 89.97303 * 11 10 9 13 13 C 1.34358 * 109.16273 * 180.02562 * 12 11 10 14 14 C 1.46903 * 106.35668 * 359.97438 * 13 12 11 15 15 C 1.46456 * 127.05980 * 180.02562 * 14 13 12 16 16 O 1.21336 * 120.00071 * 0.03225 * 15 14 13 17 17 C 1.34497 * 124.77837 * 270.29033 * 11 10 9 18 18 H 0.97001 * 120.00439 * 359.97438 * 1 2 3 19 19 H 1.08995 * 109.47000 * 59.99856 * 9 7 2 20 20 H 1.09000 * 109.46807 * 299.99104 * 9 7 2 21 21 H 1.08997 * 109.47668 * 59.99550 * 10 9 7 22 22 H 1.09004 * 109.47320 * 299.99404 * 10 9 7 23 23 H 1.07992 * 125.41774 * 359.97438 * 12 11 10 24 24 H 1.08001 * 126.81862 * 180.02562 * 13 12 11 25 25 H 1.08000 * 119.99407 * 180.02562 * 15 14 13 26 26 H 1.08005 * 125.91392 * 0.02562 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 -0.0001 11 7 5.4865 -2.6364 0.0011 12 6 6.2642 -2.6363 1.1229 13 6 7.5585 -2.6358 0.7622 14 6 7.5787 -2.6362 -0.7066 15 6 8.7594 -2.6364 -1.5731 16 8 9.8702 -2.6368 -1.0849 17 6 6.2546 -2.6304 -1.1030 18 1 -0.4851 0.8400 0.0004 19 1 3.8745 -0.6807 0.8905 20 1 3.8752 -0.6796 -0.8895 21 1 3.6585 -3.1501 -0.8902 22 1 3.6580 -3.1505 0.8897 23 1 5.8975 -2.6358 2.1386 24 1 8.4140 -2.6360 1.4214 25 1 8.6413 -2.6362 -2.6467 26 1 5.8983 -2.6245 -2.1225 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085580590.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:40 Heat of formation + Delta-G solvation = 2.045331 kcal Electronic energy + Delta-G solvation = -11207.557013 eV Core-core repulsion = 9059.086172 eV Total energy + Delta-G solvation = -2148.470841 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.83267 -38.17566 -34.25596 -32.28211 -29.58651 -29.13058 -25.45884 -23.34759 -21.23259 -19.73266 -19.43819 -17.45108 -16.45927 -15.37350 -14.81061 -14.46310 -14.11905 -13.57650 -13.42614 -13.20621 -12.70935 -12.57087 -11.75727 -11.68794 -11.21134 -10.51981 -10.36888 -10.03722 -9.54728 -9.47889 -8.75772 -8.28592 -8.05161 -6.26149 -4.28655 1.63722 2.72124 3.17740 3.26579 3.28935 3.29975 3.59746 4.26786 4.68737 5.06433 5.12608 5.23739 5.39973 5.65630 5.82246 5.88805 6.12947 6.18030 6.36230 6.84719 6.93160 7.03024 7.38661 7.42220 7.60511 7.86973 8.23689 8.74056 9.33990 10.86184 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.059747 B = 0.007898 C = 0.007507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.528759 B = 3544.474294 C = 3729.093362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.076 0.924 9 C -0.023 4.023 10 C 0.104 3.896 11 N -0.422 5.422 12 C -0.022 4.022 13 C -0.153 4.153 14 C -0.307 4.307 15 C 0.413 3.587 16 O -0.493 6.493 17 C 0.073 3.927 18 H 0.267 0.733 19 H 0.024 0.976 20 H 0.020 0.980 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.162 0.838 24 H 0.140 0.860 25 H 0.091 0.909 26 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.912 -4.189 -1.752 10.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.094 0.906 9 C -0.061 4.061 10 C -0.016 4.016 11 N -0.094 5.094 12 C -0.149 4.149 13 C -0.176 4.176 14 C -0.316 4.316 15 C 0.275 3.725 16 O -0.369 6.369 17 C -0.067 4.067 18 H 0.077 0.923 19 H 0.043 0.957 20 H 0.038 0.962 21 H 0.106 0.894 22 H 0.107 0.893 23 H 0.180 0.820 24 H 0.158 0.842 25 H 0.107 0.893 26 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 9.946 -4.082 -1.433 10.846 hybrid contribution 0.023 0.985 0.000 0.986 sum 9.969 -3.096 -1.433 10.537 Atomic orbital electron populations 1.69886 1.06298 1.27358 1.49662 1.24956 0.94740 0.99222 0.93959 0.86783 0.80345 0.83455 0.78791 1.20031 1.21039 1.19018 1.20856 0.88351 0.94953 1.52884 0.90590 1.19928 0.97866 0.90709 0.97616 1.22315 0.73394 1.01862 1.04025 1.44340 1.08262 1.51258 1.05563 1.21779 0.90546 1.10825 0.91751 1.21939 0.95545 1.06612 0.93513 1.21674 0.93685 1.21258 0.94943 1.22912 0.86303 0.69666 0.93632 1.90479 1.28369 1.38038 1.79986 1.22401 0.89944 1.01976 0.92385 0.92326 0.95733 0.96214 0.89355 0.89323 0.82013 0.84227 0.89270 0.81066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.96 55.43 0.77 -25.38 15 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 15 3 Si 0.88 20.75 27.47 -169.99 -4.67 16.08 15 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 15 6 H -0.27 -6.14 6.54 56.52 0.37 -5.77 15 7 C -0.53 -13.93 9.66 -34.44 -0.33 -14.26 15 8 H 0.08 2.11 7.99 -52.49 -0.42 1.69 15 9 C -0.02 -0.50 4.37 -27.88 -0.12 -0.63 15 10 C 0.10 1.78 5.94 -4.04 -0.02 1.75 15 11 N -0.42 -6.73 2.68 -116.76 -0.31 -7.05 15 12 C -0.02 -0.33 11.31 -16.84 -0.19 -0.53 15 13 C -0.15 -2.40 10.96 -37.45 -0.41 -2.81 15 14 C -0.31 -4.63 6.32 -103.09 -0.65 -5.29 15 15 C 0.41 5.69 11.69 34.04 0.40 6.09 15 16 O -0.49 -8.59 17.79 5.51 0.10 -8.49 15 17 C 0.07 1.04 11.38 -16.39 -0.19 0.86 15 18 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 19 H 0.02 0.55 7.20 -51.93 -0.37 0.18 15 20 H 0.02 0.43 7.57 -51.93 -0.39 0.04 15 21 H 0.09 1.40 8.13 -51.93 -0.42 0.98 15 22 H 0.09 1.45 8.13 -51.93 -0.42 1.03 15 23 H 0.16 2.15 8.06 -52.49 -0.42 1.73 15 24 H 0.14 2.05 8.06 -52.49 -0.42 1.62 15 25 H 0.09 0.86 8.06 -52.49 -0.42 0.43 15 26 H 0.17 1.90 8.06 -52.48 -0.42 1.47 15 LS Contribution 239.31 15.07 3.61 3.61 Total: -1.00 -30.97 239.31 -5.01 -35.98 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -2.89 Total: -1.89 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -1.62 Total: -12.86 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.46 Total: -32.43 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.10 Total: -8.49 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.97 -5.01 -35.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085580590.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.028 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds