Wall clock time and date at job start Mon Mar 30 2020 01:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38681 * 120.41838 * 2 1 4 4 C 1.38628 * 118.42043 * 179.70904 * 3 2 1 5 5 C 1.38225 * 119.15868 * 0.51112 * 4 3 2 6 6 C 1.50706 * 119.61903 * 179.75305 * 5 4 3 7 7 H 1.09004 * 109.46539 * 4.72216 * 6 5 4 8 8 O 1.42903 * 109.47186 * 244.72846 * 6 5 4 9 9 C 1.50699 * 109.47163 * 124.72376 * 6 5 4 10 10 H 1.07995 * 119.99640 * 0.02562 * 9 6 5 11 11 C 1.37872 * 119.99593 * 179.97438 * 9 6 5 12 12 N 1.31519 * 120.00495 * 0.02562 * 11 9 6 13 13 Si 1.86802 * 119.99694 * 180.02562 * 11 9 6 14 14 H 1.48496 * 109.47382 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46968 * 120.00359 * 13 11 9 16 16 H 1.48504 * 109.47403 * 240.00151 * 13 11 9 17 17 N 1.31858 * 120.76467 * 359.47437 * 5 4 3 18 18 C 1.31877 * 121.72478 * 0.27882 * 17 5 4 19 19 H 1.09000 * 109.46939 * 270.02299 * 1 2 3 20 20 H 1.08998 * 109.47429 * 30.02081 * 1 2 3 21 21 H 1.08997 * 109.47505 * 150.02679 * 1 2 3 22 22 H 1.08000 * 120.78882 * 359.95768 * 3 2 1 23 23 H 1.07994 * 120.41959 * 180.28383 * 4 3 2 24 24 H 0.96701 * 113.99620 * 299.99977 * 8 6 5 25 25 H 0.97000 * 120.00169 * 179.97438 * 12 11 9 26 26 H 1.08004 * 119.61912 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 0.0062 5 6 4.2256 -0.0822 0.0013 6 6 5.7312 -0.1468 0.0024 7 1 6.1380 0.8605 0.0917 8 8 6.1835 -0.7365 -1.2182 9 6 6.1974 -0.9820 1.1669 10 1 5.4756 -1.4223 1.8387 11 6 7.5454 -1.1848 1.3738 12 7 8.4243 -0.6489 0.5553 13 14 8.1232 -2.2207 2.8169 14 1 6.9459 -2.7061 3.5807 15 1 8.8992 -3.3823 2.3131 16 1 8.9841 -1.3976 3.7039 17 7 3.5254 -1.1995 0.0014 18 6 2.2066 -1.1915 0.0005 19 1 -0.3633 0.0004 1.0277 20 1 -0.3634 0.8898 -0.5141 21 1 -0.3634 -0.8902 -0.5134 22 1 1.6889 2.1424 -0.0007 23 1 4.1735 2.0592 0.0110 24 1 5.8594 -1.6358 -1.3642 25 1 9.3727 -0.7913 0.7011 26 1 1.6672 -2.1272 0.0001 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088136687.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:16 Heat of formation + Delta-G solvation = -49.205241 kcal Electronic energy + Delta-G solvation = -11594.162223 eV Core-core repulsion = 9443.468991 eV Total energy + Delta-G solvation = -2150.693233 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.10925 -37.55944 -34.31219 -34.22510 -32.86079 -29.79471 -27.37122 -25.06204 -23.86805 -22.13242 -19.12326 -17.75161 -17.32627 -16.69180 -15.98494 -15.68211 -15.22662 -14.69131 -14.55986 -13.84562 -13.58234 -13.37714 -13.16331 -12.83971 -12.79422 -12.53947 -12.10181 -11.36998 -10.78366 -10.61972 -10.60666 -9.94321 -9.56317 -8.15533 -6.39292 0.28229 0.49667 1.37980 1.39315 1.52414 2.38469 2.94392 3.13035 3.60992 3.99094 4.02293 4.18711 4.22673 4.31198 4.66215 4.83618 4.90131 4.95510 5.20097 5.26805 5.41205 5.53582 5.67530 5.95326 6.03790 6.67238 7.24629 7.30796 7.42167 8.89266 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.057294 B = 0.009951 C = 0.009269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.588365 B = 2813.075224 C = 3020.020587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.151 4.151 3 C -0.078 4.078 4 C -0.181 4.181 5 C 0.094 3.906 6 C 0.270 3.730 7 H 0.046 0.954 8 O -0.573 6.573 9 C -0.562 4.562 10 H 0.049 0.951 11 C 0.025 3.975 12 N -0.900 5.900 13 Si 0.964 3.036 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.273 1.273 17 N -0.499 5.499 18 C 0.077 3.923 19 H 0.081 0.919 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.166 0.834 23 H 0.135 0.865 24 H 0.358 0.642 25 H 0.264 0.736 26 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.379 1.939 0.130 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.153 4.153 3 C -0.103 4.103 4 C -0.201 4.201 5 C -0.043 4.043 6 C 0.212 3.788 7 H 0.064 0.936 8 O -0.377 6.377 9 C -0.600 4.600 10 H 0.067 0.933 11 C -0.177 4.177 12 N -0.538 5.538 13 Si 0.788 3.212 14 H -0.195 1.195 15 H -0.202 1.202 16 H -0.198 1.198 17 N -0.208 5.208 18 C -0.081 4.081 19 H 0.100 0.900 20 H 0.101 0.899 21 H 0.099 0.901 22 H 0.184 0.816 23 H 0.153 0.847 24 H 0.203 0.797 25 H 0.073 0.927 26 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -13.429 1.765 0.019 13.545 hybrid contribution 0.154 -0.190 0.725 0.765 sum -13.275 1.575 0.744 13.389 Atomic orbital electron populations 1.20720 0.87173 1.04231 1.03397 1.21307 0.99452 0.93398 1.01164 1.21807 0.92708 0.99751 0.96057 1.22183 0.96593 0.98565 1.02779 1.22469 0.98509 0.89313 0.93977 1.18276 0.82898 0.94054 0.83581 0.93623 1.86472 1.76559 1.32209 1.42450 1.21747 0.92174 1.33537 1.12566 0.93316 1.25884 0.96760 0.96389 0.98630 1.70199 1.01747 1.44143 1.37686 0.85447 0.78136 0.78576 0.79007 1.19532 1.20165 1.19830 1.67420 1.09244 1.32023 1.12151 1.23231 0.89372 0.99233 0.96302 0.90030 0.89918 0.90118 0.81650 0.84664 0.79710 0.92728 0.81059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 10.04 71.23 0.72 -0.92 15 2 C -0.15 -4.14 5.90 -19.77 -0.12 -4.25 15 3 C -0.08 -2.25 9.86 22.47 0.22 -2.02 15 4 C -0.18 -6.88 9.71 22.36 0.22 -6.67 15 5 C 0.09 4.38 5.73 42.55 0.24 4.63 15 6 C 0.27 14.91 3.15 29.10 0.09 15.00 15 7 H 0.05 2.68 7.87 -2.39 -0.02 2.66 15 8 O -0.57 -32.53 12.72 -148.98 -1.89 -34.42 15 9 C -0.56 -33.03 8.56 25.60 0.22 -32.81 15 10 H 0.05 2.90 7.68 -2.91 -0.02 2.88 15 11 C 0.03 1.48 5.40 84.65 0.46 1.93 15 12 N -0.90 -55.05 12.84 21.45 0.28 -54.77 15 13 Si 0.96 45.32 29.54 68.60 2.03 47.35 15 14 H -0.27 -12.53 7.11 99.48 0.71 -11.82 15 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 16 H -0.27 -12.29 7.11 99.48 0.71 -11.59 15 17 N -0.50 -22.00 9.95 -183.88 -1.83 -23.83 15 18 C 0.08 2.56 10.86 84.67 0.92 3.48 15 19 H 0.08 1.19 8.14 -2.39 -0.02 1.17 15 20 H 0.08 1.10 8.10 -2.39 -0.02 1.08 15 21 H 0.08 1.14 8.09 -2.39 -0.02 1.12 15 22 H 0.17 3.35 8.06 -2.91 -0.02 3.33 15 23 H 0.14 4.77 7.95 -2.91 -0.02 4.75 15 24 H 0.36 18.95 9.01 -74.06 -0.67 18.28 15 25 H 0.26 15.09 8.31 -92.71 -0.77 14.32 15 26 H 0.17 4.54 8.06 -2.91 -0.02 4.52 15 Total: -1.00 -70.59 236.84 2.06 -68.53 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.51 Total: 18.78 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 2.97 Total: -21.63 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -1.55 Total: -78.60 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -1.89 Total: -34.42 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -70.59 2.06 -68.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088136687.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.326 kcal (2) G-P(sol) polarization free energy of solvation -70.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds