Wall clock time and date at job start Mon Mar 30 2020 01:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38679 * 120.41464 * 2 1 4 4 C 1.38630 * 118.41967 * 179.97438 * 3 2 1 5 5 C 1.38229 * 119.15814 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.61522 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.46649 * 244.99281 * 6 5 4 8 8 O 1.42895 * 109.47045 * 4.99632 * 6 5 4 9 9 C 1.50695 * 109.47014 * 124.99738 * 6 5 4 10 10 H 1.08004 * 120.00546 * 0.27454 * 9 6 5 11 11 C 1.37885 * 119.99721 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00035 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99853 * 179.97438 * 11 9 6 14 14 H 1.48500 * 109.47093 * 60.00328 * 13 11 9 15 15 H 1.48495 * 109.47002 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47239 * 300.00048 * 13 11 9 17 17 N 1.31855 * 120.76466 * 0.24682 * 5 4 3 18 18 C 1.31881 * 121.72843 * 359.48610 * 17 5 4 19 19 H 1.08999 * 109.46958 * 90.00138 * 1 2 3 20 20 H 1.09005 * 109.46859 * 209.99957 * 1 2 3 21 21 H 1.08998 * 109.47105 * 329.99511 * 1 2 3 22 22 H 1.08001 * 120.79132 * 359.95705 * 3 2 1 23 23 H 1.08001 * 120.42089 * 179.97438 * 4 3 2 24 24 H 0.96696 * 114.00520 * 60.00051 * 8 6 5 25 25 H 0.97000 * 119.99706 * 179.97438 * 12 11 9 26 26 H 1.07992 * 119.62264 * 180.26406 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1477 0.0005 5 6 4.2256 -0.0821 0.0005 6 6 5.7313 -0.1466 0.0005 7 1 6.0756 -0.5962 -0.9308 8 8 6.2646 1.1739 0.1179 9 6 6.1982 -0.9823 1.1644 10 1 5.4768 -1.4263 1.8343 11 6 7.5464 -1.1851 1.3704 12 7 8.4248 -0.6488 0.5516 13 14 8.1254 -2.2203 2.8136 14 1 7.5706 -3.5925 2.6925 15 1 9.6089 -2.2839 2.8135 16 1 7.6568 -1.6070 4.0823 17 7 3.5255 -1.1995 -0.0049 18 6 2.2067 -1.1916 -0.0004 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3633 0.8899 0.5139 22 1 1.6889 2.1424 -0.0007 23 1 4.1735 2.0594 0.0001 24 1 5.9988 1.6352 0.9251 25 1 9.3732 -0.7912 0.6968 26 1 1.6673 -2.1271 -0.0007 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088136689.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:17 Heat of formation + Delta-G solvation = -24.520841 kcal Electronic energy + Delta-G solvation = -11605.506555 eV Core-core repulsion = 9455.883719 eV Total energy + Delta-G solvation = -2149.622837 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.65099 -35.77708 -32.99878 -32.18713 -31.08003 -28.19051 -25.72140 -23.21592 -22.52901 -20.49031 -17.10349 -16.14376 -15.79439 -14.62537 -14.46582 -14.02790 -13.90257 -13.11951 -12.88867 -12.46027 -12.30515 -12.07253 -11.46516 -11.01760 -10.86990 -10.82828 -10.12464 -9.45569 -9.20712 -8.87870 -8.62390 -8.28899 -7.94857 -5.99453 -4.15401 1.73854 1.88534 3.33333 3.37321 3.41104 4.36539 4.51450 4.99173 5.16282 5.22912 5.28843 5.42971 5.59064 5.68785 5.91822 5.93984 6.24200 6.31219 6.40164 6.69391 6.77793 7.36654 7.57982 7.87101 8.12717 8.72180 8.90090 9.27356 9.57452 11.05051 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.057143 B = 0.010146 C = 0.009102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.883223 B = 2759.021970 C = 3075.553002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.174 4.174 3 C -0.082 4.082 4 C -0.177 4.177 5 C 0.132 3.868 6 C 0.269 3.731 7 H 0.080 0.920 8 O -0.558 6.558 9 C -0.549 4.549 10 H 0.060 0.940 11 C 0.077 3.923 12 N -0.863 5.863 13 Si 0.895 3.105 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.277 1.277 17 N -0.466 5.466 18 C 0.094 3.906 19 H 0.064 0.936 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.123 0.877 23 H 0.136 0.864 24 H 0.348 0.652 25 H 0.262 0.738 26 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.751 2.594 -0.066 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.176 4.176 3 C -0.108 4.108 4 C -0.197 4.197 5 C -0.005 4.005 6 C 0.211 3.789 7 H 0.097 0.903 8 O -0.360 6.360 9 C -0.587 4.587 10 H 0.078 0.922 11 C -0.129 4.129 12 N -0.499 5.499 13 Si 0.723 3.277 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.175 5.175 18 C -0.064 4.064 19 H 0.082 0.918 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.141 0.859 23 H 0.154 0.846 24 H 0.193 0.807 25 H 0.072 0.928 26 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.815 1.669 -0.713 10.966 hybrid contribution -0.439 0.323 1.327 1.435 sum -11.254 1.993 0.614 11.445 Atomic orbital electron populations 1.20598 0.91162 1.02275 1.01727 1.20762 0.96795 0.94688 1.05393 1.21349 0.94235 0.97441 0.97756 1.22022 0.94478 1.00266 1.02910 1.23132 1.00294 0.87456 0.89666 1.18352 0.79803 0.81958 0.98830 0.90272 1.86614 1.75640 1.29755 1.43985 1.21390 0.91969 1.32918 1.12402 0.92217 1.25044 0.96741 0.94864 0.96226 1.70060 1.01515 1.42191 1.36184 0.86626 0.77364 0.81012 0.82740 1.20019 1.21210 1.20213 1.67577 1.06882 1.31728 1.11284 1.22659 0.90541 0.96790 0.96414 0.91755 0.91792 0.92059 0.85936 0.84597 0.80742 0.92849 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.04 36.01 0.36 -0.75 15 2 C -0.17 -2.71 5.90 -104.48 -0.62 -3.33 15 3 C -0.08 -1.31 9.86 -39.27 -0.39 -1.70 15 4 C -0.18 -3.37 9.24 -39.44 -0.36 -3.74 15 5 C 0.13 3.01 6.11 -82.58 -0.50 2.51 15 6 C 0.27 7.07 3.31 -29.03 -0.10 6.97 15 7 H 0.08 2.29 8.14 -51.93 -0.42 1.87 15 8 O -0.56 -14.13 11.61 -35.23 -0.41 -14.54 15 9 C -0.55 -15.55 8.56 -34.44 -0.29 -15.84 15 10 H 0.06 1.72 7.68 -52.48 -0.40 1.31 15 11 C 0.08 2.19 5.40 -17.82 -0.10 2.09 15 12 N -0.86 -25.62 12.84 55.43 0.71 -24.90 15 13 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 15 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 17 N -0.47 -10.43 9.97 -9.47 -0.09 -10.52 15 18 C 0.09 1.69 10.86 -17.55 -0.19 1.50 15 19 H 0.06 0.64 8.14 -51.93 -0.42 0.22 15 20 H 0.06 0.63 8.09 -51.93 -0.42 0.21 15 21 H 0.06 0.60 8.10 -51.93 -0.42 0.18 15 22 H 0.12 1.56 8.06 -52.49 -0.42 1.13 15 23 H 0.14 2.40 6.73 -52.49 -0.35 2.04 15 24 H 0.35 7.72 8.29 45.56 0.38 8.10 15 25 H 0.26 7.35 8.31 -40.82 -0.34 7.02 15 26 H 0.14 2.12 8.06 -52.49 -0.42 1.70 15 LS Contribution 234.17 15.07 3.53 3.53 Total: -1.00 -31.60 234.17 -5.52 -37.11 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -2.05 Total: 4.94 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -2.19 Total: -12.29 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.62 Total: -35.43 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.41 Total: -14.54 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.60 -5.52 -37.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088136689.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.593 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds